MD04G1099500.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000170
Physical Location & Seq
Reverse (-)
18432536 .. 18435372
2837 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1099500.v1.1.491

Sequence Viewer

Length: 1035 bp
ATGGCAGAAGCAACAAAGAGGTATGCAGTTGTGACAGGGGCTAACAAAGGGGTTGGATTTGGCACAGTTAAGCAGTTGGTTTCAAATGGGATCATGGTGGTGTTAACTGCTAGAGATGAGAAGAGGGGTCTTGAAGCTCTTGAAAAATTGAAAGAGTTTGGCGTCTCCGACCGCGTGGTTTTTCATCAGCTTGATGTAACAAATTCGGCTGACATTGCTTCCCTTGCAGATTTTGTGAAAACCCAATTCGGGAAACTCGATATCTTGGTAAATGCAGGAATTAATGGTAGCATAGTAAACCCTGAAAGTTTTAGATCAGCTGTAATTGGTAAGCCTGATGAAATCAATTGGAGTGAAATATCGATGACACCAAACTATGAGTTAGCAGAAGAATGCCTGAAAACAAACTACTATGGTTCCAAAAGTGTGACTGAGGCGCTTTTGCCCCTCCTCCAGCTATCTGATTCGCCAAGAATCATTAATGTTTCTTCCGGTGCTGCTAAGCTAATGAATTTTCCAAATGGATGGGCTAAAGAGGTACTTAGCGATGCTGAAAGCCTTACAGAAGAGAGAATAGATGCTGTTTTGAGTGAGTTTTTGGAAGACTATAAACAAGGCTTGCTAGAAACCAAAAGCTGGCCTCTTATCTTCCCAGCTTATAAAGTATCGAAAGCAGCCCTGAACGCGTACACTAGGACTCTGGCCAAGAAGTATCCAAAATTCTGCGTCAACTGTGGCAGCCCTGGATCAGTCAAAACAGATATGACCTTCAATTATGGCATCTTAACCATTGACGAAGGAGCTGAGAGCATTGTCAGGTTGGCGCTACTCCCCAATGGTGGAAAACTAGATCGAATGTATATGGCTGTTAGGAAGCCTGGTGTGATTGCCTTGTTTGATGTGGGACTCTCACAGCTCCTAGAAAGCTTGTTACAGCGTCTGCGAAATGAATGGGCCAATGGGATTTTAAGTGATGCCGAGGAAGTTAGGAACTCACAAAAGAGAGAACACAAGATGTTCTGGGTGAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

345

Amino Acids

37.98

Weight (kDa)

5.94

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 169 1.8e-22 short chain dehydrogenase
adh_short_C2 PF13561 13 - 168 7.4e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 636
AccII CGCG 2 cut(s) 174, 686
AciI CCGC 1 cut(s) 172
AclWI GGATC 2 cut(s) 98, 754
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 3 cut(s) 202, 511, 719
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 540, 689
AfiI CCNNNNNNNGG 3 cut(s) 249, 636, 839
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 5 cut(s) 84, 134, 143, 151, 772
AjnI CCWGG 2 cut(s) 742, 877
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 98, 754
AlwNI CAGNNNCTG 1 cut(s) 940
AoxI GGCC 3 cut(s) 638, 702, 954
ApeKI GCWGC 3 cut(s) 497, 674, 738
ApoI RAATTY 3 cut(s) 202, 511, 719
AseI ATTAAT 2 cut(s) 282, 480
AspLEI GCGC 2 cut(s) 439, 826
AspS9I GGNCC 1 cut(s) 954
BalI TGGCCA 1 cut(s) 704
BbsI GAAGAC 1 cut(s) 609
BbvI GCAGC 3 cut(s) 484, 686, 750
BccI CCATC 1 cut(s) 519
BciT130I CCWGG 2 cut(s) 744, 879
BciVI GTATCC 1 cut(s) 723
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 5 cut(s) 111, 623, 693, 848, 920
BfoI RGCGCY 2 cut(s) 440, 827
BfuI GTATCC 1 cut(s) 723
BisI GCNGC 3 cut(s) 498, 675, 739
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 3 cut(s) 499, 676, 740
Bme1390I CCNGG 2 cut(s) 744, 879
BmgT120I GGNCC 1 cut(s) 954
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 744, 879
BmsI GCATC 4 cut(s) 538, 568, 789, 964
BpiI GAAGAC 1 cut(s) 609
BpmI CTGGAG 1 cut(s) 437
Bpu1102I GCTNAGC 1 cut(s) 501
Bsa29I ATCGAT 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 742, 978
BsaWI WCCGGW 1 cut(s) 491
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 636, 839
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 2 cut(s) 744, 879
BseCI ATCGAT 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 742, 978
BseGI GGATG 1 cut(s) 530
BseLI CCNNNNNNNGG 3 cut(s) 249, 636, 839
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 423, 795
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 3 cut(s) 484, 686, 750
BseYI CCCAGC 1 cut(s) 652
Bsh1236I CGCG 2 cut(s) 174, 686
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 3 cut(s) 640, 704, 956
BshVI ATCGAT 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 172
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 1 cut(s) 918
BslI CCNNNNNNNGG 3 cut(s) 249, 636, 839
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 918
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 3 cut(s) 640, 704, 956
Bsp143I GATC 4 cut(s) 90, 314, 746, 850
Bsp1720I GCTNAGC 1 cut(s) 501
BspACI CCGC 1 cut(s) 172
BspANI GGCC 3 cut(s) 640, 704, 956
BspCNI CTCAG 2 cut(s) 424, 796
BspDI ATCGAT 1 cut(s) 362
BspFNI CGCG 2 cut(s) 174, 686
BspLI GGNNCC 1 cut(s) 418
BspPI GGATC 2 cut(s) 98, 754
BsrDI GCAATG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 742, 978
BssMI GATC 4 cut(s) 90, 314, 746, 850
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 744, 879
Bst4CI ACNGT 2 cut(s) 67, 734
Bst6I CTCTTC 2 cut(s) 116, 561
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 620, 638
BstDEI CTNAG 4 cut(s) 432, 501, 542, 804
BstF5I GGATG 1 cut(s) 530
BstFNI CGCG 2 cut(s) 174, 686
BstH2I RGCGCY 2 cut(s) 440, 827
BstHHI GCGC 2 cut(s) 439, 826
BstKTI GATC 4 cut(s) 93, 317, 749, 853
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 4 cut(s) 90, 314, 746, 850
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 215, 224, 683
BstNI CCWGG 2 cut(s) 744, 879
BstSCI CCNGG 2 cut(s) 742, 877
BstUI CGCG 2 cut(s) 174, 686
BstV1I GCAGC 3 cut(s) 484, 686, 750
BstV2I GAAGAC 1 cut(s) 609
BstXI CCANNNNNNTGG 1 cut(s) 525
Bsu15I ATCGAT 1 cut(s) 362
BsuI GTATCC 1 cut(s) 723
BsuRI GGCC 3 cut(s) 640, 704, 956
BsuTUI ATCGAT 1 cut(s) 362
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 530
Cac8I GCNNGC 2 cut(s) 620, 638
CaiI CAGNNNCTG 1 cut(s) 940
CfoI GCGC 2 cut(s) 439, 826
Cfr13I GGNCC 1 cut(s) 954
ClaI ATCGAT 1 cut(s) 362
CseI GACGC 3 cut(s) 151, 715, 926
Csp6I GTAC 2 cut(s) 539, 688
CviAII CATG 1 cut(s) 94
CviQI GTAC 2 cut(s) 539, 688
DdeI CTNAG 4 cut(s) 432, 501, 542, 804
DpnI GATC 4 cut(s) 92, 316, 748, 852
DpnII GATC 4 cut(s) 90, 314, 746, 850
EaeI YGGCCR 1 cut(s) 702
Eam1104I CTCTTC 2 cut(s) 116, 561
EarI CTCTTC 2 cut(s) 116, 561
Eco32I GATATC 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 742, 877
EcoRV GATATC 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 97
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FaqI GGGAC 1 cut(s) 918
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 498, 675, 739
FokI GGATG 1 cut(s) 537
Fsp4HI GCNGC 3 cut(s) 498, 675, 739
FspBI CTAG 5 cut(s) 111, 623, 693, 848, 920
GlaI GCGC 2 cut(s) 438, 825
GluI GCNGC 3 cut(s) 498, 675, 739
GsaI CCCAGC 1 cut(s) 656
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 2 cut(s) 440, 827
HaeIII GGCC 3 cut(s) 640, 704, 956
HapII CCGG 1 cut(s) 492
HgaI GACGC 3 cut(s) 151, 715, 926
HhaI GCGC 2 cut(s) 439, 826
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 2 cut(s) 437, 824
HinP1I GCGC 2 cut(s) 437, 824
HincII GTYRAC 2 cut(s) 105, 730
HindII GTYRAC 2 cut(s) 105, 730
HindIII AAGCTT 1 cut(s) 925
HinfI GANTC 4 cut(s) 464, 474, 697, 906
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 492
Hpy166II GTNNAC 4 cut(s) 105, 298, 690, 730
Hpy188I TCNGA 2 cut(s) 169, 463
Hpy188III TCNNGA 3 cut(s) 131, 140, 250
Hpy8I GTNNAC 4 cut(s) 105, 298, 690, 730
HpyAV CCTTC 2 cut(s) 778, 791
HpyCH4III ACNGT 2 cut(s) 67, 734
HpyCH4V TGCA 3 cut(s) 26, 227, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 224, 683
HpyF3I CTNAG 4 cut(s) 432, 501, 542, 804
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 2 cut(s) 437, 824
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 4 cut(s) 90, 314, 746, 850
LmnI GCTCC 2 cut(s) 800, 921
Lsp1109I GCAGC 3 cut(s) 484, 686, 750
LweI GCATC 4 cut(s) 538, 568, 789, 964
MaeI CTAG 5 cut(s) 111, 623, 693, 848, 920
MaeIII GTNAC 4 cut(s) 31, 196, 427, 930
MalI GATC 4 cut(s) 92, 316, 748, 852
MboI GATC 4 cut(s) 90, 314, 746, 850
MboII GAAGA 6 cut(s) 133, 401, 480, 578, 614, 640
MfeI CAATTG 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 9 cut(s) 146, 202, 245, 279, 324, 346, 511, 719, 772
MluI ACGCGT 1 cut(s) 684
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 2 cut(s) 691, 900
MmeI TCCRAC 2 cut(s) 34, 192
MnlI CCTC 8 cut(s) 12, 117, 427, 458, 461, 529, 651, 973
Mox20I TGGCCA 1 cut(s) 704
MscI TGGCCA 1 cut(s) 704
MseI TTAA 6 cut(s) 69, 104, 282, 480, 785, 968
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 2 cut(s) 744, 879
MunI CAATTG 1 cut(s) 346
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 2 cut(s) 744, 879
MvnI CGCG 2 cut(s) 174, 686
MwoI GCNNNNNNNGC 3 cut(s) 215, 224, 683
NdeII GATC 4 cut(s) 90, 314, 746, 850
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 418
NmeAIII GCCGAG 1 cut(s) 1003
NmuCI GTSAC 2 cut(s) 31, 427
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 464, 474
PflMI CCANNNNNTGG 1 cut(s) 636
PkrI GCNGC 3 cut(s) 499, 676, 740
PleI GAGTC 2 cut(s) 691, 900
PpsI GAGTC 2 cut(s) 691, 900
PshBI ATTAAT 2 cut(s) 282, 480
PsiI TTATAA 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 742, 877
PspFI CCCAGC 1 cut(s) 652
PspGI CCWGG 2 cut(s) 742, 877
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 954
PstNI CAGNNNCTG 1 cut(s) 940
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 2 cut(s) 540, 689
RsaNI GTAC 2 cut(s) 539, 688
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 6 cut(s) 69, 104, 282, 480, 785, 968
SatI GCNGC 3 cut(s) 498, 675, 739
Sau3AI GATC 4 cut(s) 90, 314, 746, 850
Sau96I GGNCC 1 cut(s) 954
SchI GAGTC 2 cut(s) 691, 900
ScrFI CCNGG 2 cut(s) 744, 879
SfaNI GCATC 4 cut(s) 538, 568, 789, 964
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 9 cut(s) 146, 202, 245, 279, 324, 346, 511, 719, 772
SsiI CCGC 1 cut(s) 172
SspMI CTAG 5 cut(s) 111, 623, 693, 848, 920
StyD4I CCNGG 2 cut(s) 742, 877
TaaI ACNGT 2 cut(s) 67, 734
TaqI TCGA 4 cut(s) 258, 362, 668, 853
TasI AATT 9 cut(s) 146, 202, 245, 279, 324, 346, 511, 719, 772
TfiI GAWTC 2 cut(s) 464, 474
Tru1I TTAA 6 cut(s) 69, 104, 282, 480, 785, 968
Tru9I TTAA 6 cut(s) 69, 104, 282, 480, 785, 968
TseFI GTSAC 2 cut(s) 31, 427
TseI GCWGC 3 cut(s) 497, 674, 738
Tsp45I GTSAC 2 cut(s) 31, 427
TspDTI ATGAA 4 cut(s) 173, 354, 524, 963
Van91I CCANNNNNTGG 1 cut(s) 636
VspI ATTAAT 2 cut(s) 282, 480
XapI RAATTY 3 cut(s) 202, 511, 719
XspI CTAG 5 cut(s) 111, 623, 693, 848, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.