Rorug07G0225100

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
20533786 .. 20534234
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0225100.1

Sequence Viewer

Length: 432 bp
ATGAGAACCACCGTAACAGCTACTATTTCACCAACAAAACTACCTTCGACGGAAACACCACCGAACATGGCTCCGCTGGTTTCACCTTGGCACTCTCCGATCCCATACCTCTTAGGTGGTCTAGTGACGATGGCTATTCTTGTTGTTTGTGCTCTCTTGATCTTGGCTTGCTCGTTTTGGAAGCGACACGGAGGAGGCAGCAGTGCCAACAGAGATTTGGAGCCAGGTGGGGATTCTGTGAAGGTGTTTAAAGACAAGGTTTTGGTTATAATGGCCGGAAATGAGAACCCTACTTACTTGGCCACCCCGATTCCGGTTTGCCATACTAAAAGTACTAGTTTTGAAGAGGAATCAGAGAAGATAGAAGGAGATGATAAGGAAGAGAACTGTGAGAAATCAAAAGAGGCAGCATCATCAACACCAGTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

15.3

Weight (kDa)

5.35

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 2 cut(s) 273, 300
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 1 cut(s) 344
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 20, 429
AluI AGCT 2 cut(s) 20, 429
Alw21I GWGCWC 1 cut(s) 154
AlwI GGATC 1 cut(s) 94
AoxI GGCC 2 cut(s) 273, 300
ApeKI GCWGC 2 cut(s) 198, 407
AsuHPI GGTGA 2 cut(s) 21, 75
BalI TGGCCA 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 210, 419
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 225
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 3 cut(s) 122, 336, 430
BisI GCNGC 2 cut(s) 199, 408
BlsI GCNGC 2 cut(s) 200, 409
BmcAI AGTACT 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 72, 222
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 86
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 210, 419
BshFI GGCC 2 cut(s) 275, 302
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 276, 314
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 2 cut(s) 275, 302
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 99, 159
BspACI CCGC 1 cut(s) 74
BspANI GGCC 2 cut(s) 275, 302
BspLI GGNNCC 2 cut(s) 72, 222
BspPI GGATC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 99, 159
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 13, 389
Bst6I CTCTTC 2 cut(s) 339, 375
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 112
BstKTI GATC 2 cut(s) 102, 162
BstMBI GATC 2 cut(s) 99, 159
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 210, 419
BsuRI GGCC 2 cut(s) 275, 302
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 208, 429
Cac8I GCNNGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 333
CviAII CATG 1 cut(s) 67
CviJI RGCY 8 cut(s) 20, 71, 134, 167, 223, 275, 302, 429
CviKI_1 RGCY 8 cut(s) 20, 71, 134, 167, 223, 275, 302, 429
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 112
DpnI GATC 2 cut(s) 101, 161
DpnII GATC 2 cut(s) 99, 159
DraI TTTAAA 1 cut(s) 250
EaeI YGGCCR 2 cut(s) 273, 300
Eam1104I CTCTTC 2 cut(s) 339, 375
EarI CTCTTC 2 cut(s) 339, 375
Eco130I CCWWGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 1 cut(s) 70
FaiI YATR 4 cut(s) 68, 106, 269, 324
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 199, 408
Fsp4HI GCNGC 2 cut(s) 199, 408
FspBI CTAG 3 cut(s) 122, 336, 430
GluI GCNGC 2 cut(s) 199, 408
HaeIII GGCC 2 cut(s) 275, 302
HapII CCGG 2 cut(s) 276, 314
Hin1II CATG 1 cut(s) 70
HinfI GANTC 3 cut(s) 233, 310, 350
HpaII CCGG 2 cut(s) 276, 314
HphI GGTGA 2 cut(s) 21, 75
Hpy188I TCNGA 2 cut(s) 99, 355
Hpy188III TCNNGA 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 3 cut(s) 54, 235, 359
HpyCH4III ACNGT 2 cut(s) 13, 389
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 99, 159
LmnI GCTCC 2 cut(s) 76, 220
LpnPI CCDG 5 cut(s) 62, 210, 237, 289, 327
Lsp1109I GCAGC 2 cut(s) 210, 419
LweI GCATC 1 cut(s) 419
MaeI CTAG 3 cut(s) 122, 336, 430
MaeIII GTNAC 2 cut(s) 13, 124
MalI GATC 2 cut(s) 101, 161
MboI GATC 2 cut(s) 99, 159
MboII GAAGA 3 cut(s) 356, 370, 392
MhlI GDGCHC 1 cut(s) 154
MlsI TGGCCA 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 302
MnlI CCTC 5 cut(s) 119, 185, 188, 340, 397
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 2 cut(s) 276, 314
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
NdeII GATC 2 cut(s) 99, 159
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 72, 222
NmuCI GTSAC 1 cut(s) 124
PfeI GAWTC 3 cut(s) 233, 310, 350
PkrI GCNGC 2 cut(s) 200, 409
PsiI TTATAA 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 72, 222
PsrI GAACNNNNNNTAC 2 cut(s) 278, 310
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 199, 408
Sau3AI GATC 2 cut(s) 99, 159
ScaI AGTACT 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 154
SetI ASST 9 cut(s) 22, 46, 88, 111, 118, 229, 246, 261, 431
SfaNI GCATC 1 cut(s) 419
SpeI ACTAGT 1 cut(s) 335
SsiI CCGC 1 cut(s) 74
SspMI CTAG 3 cut(s) 122, 336, 430
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 2 cut(s) 13, 389
TaqI TCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 332
TfiI GAWTC 3 cut(s) 233, 310, 350
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 208, 429
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 198, 407
Tsp45I GTSAC 1 cut(s) 124
TspGWI ACGGA 2 cut(s) 65, 204
TspRI CASTG 2 cut(s) 208, 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XspI CTAG 3 cut(s) 122, 336, 430
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.