FvH4_7g13601

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000170
Physical Location & Seq
Forward (+)
12177873 .. 12178611
739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13601.t1

Sequence Viewer

Length: 504 bp
ATGGGTTTTCACCAACTGGATGTTGCTGACCCTGCTAGTATTACTTCTTTGGCACACTTTATCAGAACCCAGTTTGGGAAGCTTGATATCTTGGTAAACAATGCAGGGATTGGCGGATCAATAATCGATGCTGATGGTGCTAAAGCTGCAGTTGCAGCTGGGGGACCAATTGATTGGAAAAAGCTTGTGACAGAAACTTATGAATTAACAGAAGAATGCTTGCAAATCAATTATTATGGAGCTAAAAGAACATCCGAAACTCTTATCCCACTCCTCGAGCTACCTGATTCACCAAGAATAGTTAATGTTTCATCCTCTATGGGGAAGTTAAAGTACATGCCCAGCGATAGAGTTAAAGGAATTTTCACTAATTTAGAGAACCTGAAGGAAGATAGTATAGATGAAGTATTGACAGAGTTTCTCAAGGACTACAAGGAGGGTTCACTTTTAGCAAGGGATGGCCTTCTTCTATGTCAGGCTATACAGTTTCCAAAACAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

168

Amino Acids

18.34

Weight (kDa)

5.05

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 3 - 112 4.4e-12 short chain dehydrogenase
adh_short_C2 PF13561 4 - 114 1.1e-08 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 404
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 75, 321
AluBI AGCT 6 cut(s) 82, 146, 158, 184, 242, 280
AluI AGCT 6 cut(s) 82, 146, 158, 184, 242, 280
AlwI GGATC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 146, 155
ApoI RAATTY 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 282
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BbvI GCAGC 2 cut(s) 133, 167
BccI CCATC 2 cut(s) 128, 452
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 147, 156
BlsI GCNGC 2 cut(s) 148, 157
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 407
Bsa29I ATCGAT 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 321
Bse1I ACTGG 2 cut(s) 21, 70
BseCI ATCGAT 1 cut(s) 126
BseGI GGATG 4 cut(s) 25, 251, 311, 463
BseLI CCNNNNNNNGG 2 cut(s) 75, 321
BseNI ACTGG 2 cut(s) 21, 70
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 133, 167
BseYI CCCAGC 2 cut(s) 158, 341
BshFI GGCC 1 cut(s) 462
BshVI ATCGAT 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 75, 321
BsmFI GGGAC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 275
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 462
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 1 cut(s) 124
BsrI ACTGG 2 cut(s) 21, 70
BssMI GATC 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 221
BstF5I GGATG 4 cut(s) 25, 251, 311, 463
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 5 cut(s) 32, 137, 146, 152, 155
BstNSI RCATGY 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 133, 167
BstXI CCANNNNNNTGG 1 cut(s) 174
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 1 cut(s) 462
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 4 cut(s) 25, 251, 311, 463
Cac8I GCNNGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 164
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 1 cut(s) 334
CviAII CATG 1 cut(s) 337
CviJI RGCY 8 cut(s) 82, 146, 158, 184, 242, 280, 462, 479
CviKI_1 RGCY 8 cut(s) 82, 146, 158, 184, 242, 280, 462, 479
CviQI GTAC 1 cut(s) 334
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 129
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 404
Eco88I CYCGRG 1 cut(s) 275
EcoRV GATATC 1 cut(s) 88
FaeI CATG 1 cut(s) 340
FaiI YATR 7 cut(s) 201, 237, 320, 338, 398, 472, 482
FaqI GGGAC 1 cut(s) 177
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 147, 156
FokI GGATG 4 cut(s) 32, 238, 298, 470
Fsp4HI GCNGC 2 cut(s) 147, 156
FspBI CTAG 1 cut(s) 36
GluI GCNGC 2 cut(s) 147, 156
GsaI CCCAGC 2 cut(s) 162, 345
HaeIII GGCC 1 cut(s) 462
Hin1II CATG 1 cut(s) 340
HindIII AAGCTT 2 cut(s) 80, 182
HinfI GANTC 1 cut(s) 287
HphI GGTGA 1 cut(s) 282
Hpy166II GTNNAC 2 cut(s) 97, 443
Hpy188I TCNGA 2 cut(s) 65, 256
Hpy8I GTNNAC 2 cut(s) 97, 443
HpyAV CCTTC 2 cut(s) 379, 473
HpyCH4III ACNGT 1 cut(s) 486
HpyCH4V TGCA 4 cut(s) 104, 149, 155, 223
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 137, 146, 152, 155
Hsp92II CATG 1 cut(s) 340
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 9 cut(s) 2, 45, 83, 90, 144, 297, 355, 395, 461
Lsp1109I GCAGC 2 cut(s) 133, 167
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 3 cut(s) 224, 401, 458
MfeI CAATTG 1 cut(s) 168
MluCI AATT 5 cut(s) 168, 203, 229, 360, 370
MnlI CCTC 3 cut(s) 284, 325, 430
MseI TTAA 4 cut(s) 206, 303, 329, 354
MspA1I CMGCKG 1 cut(s) 158
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 221
MwoI GCNNNNNNNGC 5 cut(s) 32, 137, 146, 152, 155
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 340
PaeR7I CTCGAG 1 cut(s) 275
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 148, 157
PspFI CCCAGC 2 cut(s) 158, 341
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 164
PspXI VCTCGAGB 1 cut(s) 275
PstI CTGCAG 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 4 cut(s) 206, 303, 329, 354
SatI GCNGC 2 cut(s) 147, 156
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 1 cut(s) 164
SetI ASST 8 cut(s) 84, 148, 160, 186, 244, 282, 286, 384
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 275, 422
SmoI CTYRAG 2 cut(s) 275, 422
Sse9I AATT 5 cut(s) 168, 203, 229, 360, 370
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 486
TaqI TCGA 2 cut(s) 126, 276
TasI AATT 5 cut(s) 168, 203, 229, 360, 370
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 4 cut(s) 206, 303, 329, 354
Tru9I TTAA 4 cut(s) 206, 303, 329, 354
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 146, 155
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 216, 300, 417
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 360
XceI RCATGY 1 cut(s) 340
XhoI CTCGAG 1 cut(s) 275
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.