MD01G1052500.v1.1

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000170
Physical Location & Seq
Forward (+)
15730733 .. 15732377
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1052500.v1.1.491

Sequence Viewer

Length: 306 bp
ATGTTGACTCAGTTTCTAAAAGACTTCAAGGAGGGCTCAATTGAAAGCAAAGGCTGGCCAGCTTTTACGCCCGGCTATATACTCTCAAAAGCAGCAGTGAACGCATATACGCGGGTTCTAGCGAAGAAGTACCCCGATTTTCGCATCAATTGTCTCTGCCCCGGATTTATCAAAACAGATCTGAACTTCAATGCTGGTAACGTGCCTGTCGAAGAAGGTGCTGCAAAGGTTCTGAAGTTAGCATTTCTGCCCAATGATGGTCCTTCTGGCTTCTTCTTTGTTGAGTCTGAAGTAACAGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

102

Amino Acids

11.1

Weight (kDa)

7.72

Isoelectric Point (pI)

23.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 16 - 66 6.4e-07 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 21 - 62 4e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AciI CCGC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 3 cut(s) 28, 44, 190
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 92, 221
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 2 cut(s) 72, 162
AvaII GGWCC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 58
BanII GRGCYC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 104, 208
BccI CCATC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BcnI CCSGG 2 cut(s) 72, 162
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 119
BglII AGATCT 1 cut(s) 178
BisI GCNGC 2 cut(s) 93, 222
BlsI GCNGC 2 cut(s) 94, 223
Bme1390I CCNGG 2 cut(s) 72, 162
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 2 cut(s) 72, 162
BmsI GCATC 1 cut(s) 153
BpuMI CCSGG 2 cut(s) 72, 162
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 104, 208
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 72, 162
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 1 cut(s) 112
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 22
BspFNI CGCG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 56, 60
BstDEI CTNAG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 70, 160
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 104, 208
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 56, 60
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 6 cut(s) 36, 54, 58, 62, 75, 270
CviKI_1 RGCY 6 cut(s) 36, 54, 58, 62, 75, 270
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 38
FaiI YATR 4 cut(s) 78, 80, 106, 108
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 93, 222
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 93, 222
FspBI CTAG 1 cut(s) 119
GluI GCNGC 2 cut(s) 93, 222
HaeIII GGCC 1 cut(s) 58
HapII CCGG 2 cut(s) 72, 162
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 7, 284
HpaII CCGG 2 cut(s) 72, 162
Hpy166II GTNNAC 2 cut(s) 6, 100
Hpy188I TCNGA 3 cut(s) 183, 234, 289
Hpy8I GTNNAC 2 cut(s) 6, 100
HpyAV CCTTC 2 cut(s) 209, 273
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 201
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 8 cut(s) 40, 72, 85, 175, 180, 219, 252, 282
Lsp1109I GCAGC 2 cut(s) 104, 208
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 197, 292
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 3 cut(s) 136, 224, 265
MfeI CAATTG 2 cut(s) 39, 148
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 58
MluCI AATT 2 cut(s) 39, 148
MluNI TGGCCA 1 cut(s) 58
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 1 cut(s) 25
Mox20I TGGCCA 1 cut(s) 58
MscI TGGCCA 1 cut(s) 58
Msp20I TGGCCA 1 cut(s) 58
MspI CCGG 2 cut(s) 72, 162
MspR9I CCNGG 2 cut(s) 72, 162
MunI CAATTG 2 cut(s) 39, 148
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 2 cut(s) 72, 162
NdeII GATC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PkrI GCNGC 2 cut(s) 94, 223
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 2 cut(s) 93, 222
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 72, 162
SduI GDGCHC 1 cut(s) 38
SetI ASST 5 cut(s) 64, 204, 220, 231, 301
SfaNI GCATC 1 cut(s) 153
SinI GGWCC 1 cut(s) 260
Sse9I AATT 2 cut(s) 39, 148
SsiI CCGC 1 cut(s) 112
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 70, 160
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 210
TasI AATT 2 cut(s) 39, 148
TscAI CASTG 1 cut(s) 102
TseI GCWGC 2 cut(s) 92, 221
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 260
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.