Rw1G021680

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000170
Physical Location & Seq
Forward (+)
46064133 .. 46066207
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021680.1

Sequence Viewer

Length: 921 bp
ATGGAGAGGGAGAAGAAGAGTATAGCTGCCAGACATATACTGATGCATGCAGTTGTTACAGGTTCAAACAAGGGGGTTGGATTTGGAATAGTAAAGCAACTAGCTACAAATGGGGTCATGACAGTATTAACTGCTAGAGATGAGAAGAAGGGTATTGAAGCTGTTGAGAAACTGAAAGAGTGTTGCCTCTCTAACGTTGTTGTTTTTCATCAGCTTGATGTCACAGACCCTGATAGCATCGCTTCCCTCGCAGATTTTGTCAAAACCCATTTTGGAAAACTGGATATCTTGGTGAACAATGCAGCAGTCAATGGACTCACTAACGAACCTGAAGCTTTCATAGCTGCAGCTGCAAATAGGGGAAAGGCAAGTGTGGACGTCCACTGGAGTGATTTTGCAACTCAGACATACGAGTTAGGCAAAGAATGTCTAAAAACAAACTACTATGGCACCAAGAGAATTACCGAAGCACTTGTTCCTCTCCTTGAGCTATCGGATTCACCAAGAGTAGTCAATATTAGTTCTGGCGCAGGGAGGTTAAAGCTTATACCGAACGAGTGGGCCAAAGGGGTGTTAGGTGATGCTGAGAAACTTACAGAGGAGAGGGTAGATGAGGTTCTGAATGAGTTTCTAAAAGACTTCAAAGAAGATATGCTAGAAACCAAAGGCTGGCCACTTTCACTTTCTGCTTATATACTCTCCAAAGCTTCCTTGAATGCATACACTAGAATTCTGGCCAAGAAGTACAAAAATTTCTGTGTCAATTGCGTCTGCCCTGGATTCGTCAAAACAGATATGACCTTCAATGCAGGCATCTTAACCACTGATGAAGCTGCTGAAAATGTTACCAGGCTAGCTGTGTTTCCAAATGGCAATCCCTCCGGTATCTTCTTCTTTCAACAAGAAGCATCATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

306

Amino Acids

33.53

Weight (kDa)

6.03

Isoelectric Point (pI)

21.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 181 1.5e-23 short chain dehydrogenase
adh_short_C2 PF13561 23 - 178 2.1e-15 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 227 - 285 1.4e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 669
AclI AACGTT 1 cut(s) 195
AcoI YGGCCR 2 cut(s) 671, 735
AcsI RAATTY 2 cut(s) 729, 751
AcuI CTGAAG 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 1 cut(s) 746
AfiI CCNNNNNNNGG 1 cut(s) 669
AgsI TTSAA 6 cut(s) 66, 158, 643, 715, 805, 899
AjnI CCWGG 2 cut(s) 775, 848
AleI CACNNNNGTG 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 3 cut(s) 561, 671, 735
ApeKI GCWGC 6 cut(s) 26, 302, 344, 347, 350, 833
ApoI RAATTY 2 cut(s) 729, 751
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 561
AsuHPI GGTGA 3 cut(s) 304, 492, 590
AsuNHI GCTAGC 1 cut(s) 853
BalI TGGCCA 2 cut(s) 673, 737
BanI GGYRCC 1 cut(s) 449
BbvI GCAGC 6 cut(s) 13, 314, 331, 337, 359, 820
BciT130I CCWGG 2 cut(s) 777, 850
BfaI CTAG 5 cut(s) 101, 135, 656, 726, 854
BfmI CTRYAG 1 cut(s) 345
BisI GCNGC 6 cut(s) 27, 303, 345, 348, 351, 834
BlsI GCNGC 6 cut(s) 28, 304, 346, 349, 352, 835
Bme1390I CCNGG 2 cut(s) 777, 850
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 2 cut(s) 777, 850
BmsI GCATC 5 cut(s) 33, 246, 571, 822, 917
BmtI GCTAGC 1 cut(s) 857
BpmI CTGGAG 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 775
BsaWI WCCGGW 1 cut(s) 881
Bsc4I CCNNNNNNNGG 1 cut(s) 669
Bse1I ACTGG 2 cut(s) 285, 389
BseBI CCWGG 2 cut(s) 777, 850
BseDI CCNNGG 1 cut(s) 775
BseGI GGATG 1 cut(s) 911
BseLI CCNNNNNNNGG 1 cut(s) 669
BseMII CTCAG 2 cut(s) 416, 576
BseNI ACTGG 2 cut(s) 285, 389
BseRI GAGGAG 1 cut(s) 614
BseXI GCAGC 6 cut(s) 13, 314, 331, 337, 359, 820
BshFI GGCC 3 cut(s) 563, 673, 737
BshNI GGYRCC 1 cut(s) 449
BsiSI CCGG 1 cut(s) 882
BslI CCNNNNNNNGG 1 cut(s) 669
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 3 cut(s) 563, 673, 737
BspANI GGCC 3 cut(s) 563, 673, 737
BspCNI CTCAG 2 cut(s) 415, 577
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 349
BspOI GCTAGC 1 cut(s) 857
BspT107I GGYRCC 1 cut(s) 449
BsrI ACTGG 2 cut(s) 285, 389
BssECI CCNNGG 1 cut(s) 775
BssNI GRCGYC 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 777, 850
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 378
BstC8I GCNNGC 4 cut(s) 48, 671, 811, 855
BstDEI CTNAG 2 cut(s) 402, 585
BstF5I GGATG 1 cut(s) 911
BstHHI GCGC 1 cut(s) 530
BstMWI GCNNNNNNNGC 3 cut(s) 248, 341, 350
BstNI CCWGG 2 cut(s) 777, 850
BstNSI RCATGY 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 775, 848
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 6 cut(s) 13, 314, 331, 337, 359, 820
BsuRI GGCC 3 cut(s) 563, 673, 737
BtgZI GCGATG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 911
BtsIMutI CAGTG 2 cut(s) 382, 822
Cac8I GCNNGC 4 cut(s) 48, 671, 811, 855
CaiI CAGNNNCTG 1 cut(s) 230
CciI TCATGA 1 cut(s) 117
CfoI GCGC 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 561
CseI GACGC 1 cut(s) 757
Csp6I GTAC 1 cut(s) 745
CviAII CATG 2 cut(s) 47, 118
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 2 cut(s) 402, 585
EaeI YGGCCR 2 cut(s) 671, 735
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 729
EcoRII CCWGG 2 cut(s) 775, 848
EcoRV GATATC 1 cut(s) 286
EcoT22I ATGCAT 2 cut(s) 48, 721
FaeI CATG 2 cut(s) 50, 121
FatI CATG 2 cut(s) 46, 117
Fnu4HI GCNGC 6 cut(s) 27, 303, 345, 348, 351, 834
FokI GGATG 1 cut(s) 898
Fsp4HI GCNGC 6 cut(s) 27, 303, 345, 348, 351, 834
FspBI CTAG 5 cut(s) 101, 135, 656, 726, 854
GlaI GCGC 1 cut(s) 529
GluI GCNGC 6 cut(s) 27, 303, 345, 348, 351, 834
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 3 cut(s) 563, 673, 737
HapII CCGG 1 cut(s) 882
HgaI GACGC 1 cut(s) 757
HhaI GCGC 1 cut(s) 530
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 2 cut(s) 50, 121
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HindIII AAGCTT 3 cut(s) 333, 542, 705
HinfI GANTC 3 cut(s) 315, 497, 780
HpaII CCGG 1 cut(s) 882
HphI GGTGA 3 cut(s) 304, 492, 590
Hpy166II GTNNAC 3 cut(s) 295, 376, 382
Hpy188I TCNGA 3 cut(s) 405, 496, 621
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 3 cut(s) 295, 376, 382
HpyAV CCTTC 2 cut(s) 142, 811
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 2 cut(s) 195, 378
HpyCH4V TGCA 8 cut(s) 46, 50, 302, 347, 353, 398, 719, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 341, 350
HpyF3I CTNAG 2 cut(s) 402, 585
HpySE526I ACGT 2 cut(s) 195, 378
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 2 cut(s) 50, 121
HspAI GCGC 1 cut(s) 528
Lsp1109I GCAGC 6 cut(s) 13, 314, 331, 337, 359, 820
LweI GCATC 5 cut(s) 33, 246, 571, 822, 917
MaeI CTAG 5 cut(s) 101, 135, 656, 726, 854
MaeII ACGT 2 cut(s) 195, 378
MaeIII GTNAC 3 cut(s) 55, 220, 844
MboII GAAGA 6 cut(s) 25, 28, 157, 659, 880, 883
MfeI CAATTG 1 cut(s) 763
MlsI TGGCCA 2 cut(s) 673, 737
MluCI AATT 4 cut(s) 459, 729, 751, 763
MluNI TGGCCA 2 cut(s) 673, 737
MlyI GAGTC 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 8 cut(s) 197, 257, 489, 528, 592, 597, 607, 889
Mox20I TGGCCA 2 cut(s) 673, 737
Mph1103I ATGCAT 2 cut(s) 48, 721
MscI TGGCCA 2 cut(s) 673, 737
MseI TTAA 3 cut(s) 128, 539, 818
MslI CAYNNNNRTG 1 cut(s) 387
Msp20I TGGCCA 2 cut(s) 673, 737
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 882
MspR9I CCNGG 2 cut(s) 777, 850
MunI CAATTG 1 cut(s) 763
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 2 cut(s) 777, 850
MwoI GCNNNNNNNGC 3 cut(s) 248, 341, 350
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 2 cut(s) 50, 121
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 1 cut(s) 220
NsiI ATGCAT 2 cut(s) 48, 721
NspI RCATGY 1 cut(s) 50
OliI CACNNNNGTG 1 cut(s) 387
PaeI GCATGC 1 cut(s) 50
PagI TCATGA 1 cut(s) 117
PctI GAATGC 1 cut(s) 721
PfeI GAWTC 2 cut(s) 497, 780
PflMI CCANNNNNTGG 1 cut(s) 669
PkrI GCNGC 6 cut(s) 28, 304, 346, 349, 352, 835
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
Psp1406I AACGTT 1 cut(s) 195
Psp6I CCWGG 2 cut(s) 775, 848
PspGI CCWGG 2 cut(s) 775, 848
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 600, 632
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 3 cut(s) 128, 539, 818
SatI GCNGC 6 cut(s) 27, 303, 345, 348, 351, 834
Sau96I GGNCC 1 cut(s) 561
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 2 cut(s) 777, 850
SfaNI GCATC 5 cut(s) 33, 246, 571, 822, 917
SfcI CTRYAG 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SphI GCATGC 1 cut(s) 50
Sse9I AATT 4 cut(s) 459, 729, 751, 763
SspI AATATT 1 cut(s) 517
SspMI CTAG 5 cut(s) 101, 135, 656, 726, 854
StyD4I CCNGG 2 cut(s) 775, 848
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 2 cut(s) 198, 381
TasI AATT 4 cut(s) 459, 729, 751, 763
TatI WGTACW 1 cut(s) 744
TfiI GAWTC 2 cut(s) 497, 780
Tru1I TTAA 3 cut(s) 128, 539, 818
Tru9I TTAA 3 cut(s) 128, 539, 818
TscAI CASTG 2 cut(s) 389, 829
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 6 cut(s) 26, 302, 344, 347, 350, 833
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 197, 328, 843
TspRI CASTG 2 cut(s) 389, 829
Van91I CCANNNNNTGG 1 cut(s) 669
XapI RAATTY 2 cut(s) 729, 751
XceI RCATGY 1 cut(s) 50
XspI CTAG 5 cut(s) 101, 135, 656, 726, 854
ZraI GACGTC 1 cut(s) 379
Zsp2I ATGCAT 2 cut(s) 48, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.