Prupe.1G171600_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000170
Physical Location & Seq
Forward (+)
14280830 .. 14282295
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G171600.1

Sequence Viewer

Length: 741 bp
ATGCAGAAATCAGAAAGCAAATCTGGAATCCCATCAACAATGGCAGAAGTAGCAAAGAAGTATGCAGTTGTTACAGGTTCAAATCAGGGGATTGGATTTGGAACAGTTAGAAAGTTGGCTTCAAATGGGATCATGGCGGTGTTAACTGCTTTAGATGAGAAAATGGGCCTTGAAGCTATTGAAAAATTGAAAGAACATCAGCTTGATGTAGCAGACGCTGCTGGCATTGCTGCCCTTGCAGATTTTGCCAAAATCCAATTTGGGAAACTAGATATCTTGGTTAATAATGCAGGGGTTAGTGGAACCACTGTAGACCCTGAAGCCATGAGAGCTGCTGCAGCTGCAGGTATTGGTAAGGATCGTGTAGGAGTAAATTGGAGTGAAATAATGACTCAAACGTATGAGTTAGCTGAATTATCTGATTCACCAAGAGTTGTCAGTCTTTCTTCCGGCATGGGATCGTTAAGGCATATACCAAATGAATGGGCCAAAGGGATGTTAAGTGATGCTGAGAAACTTACAGAAGAGAGAACAGATGATGTTTTGAATGAGTTTCTCAAAGACTTCAAAGAAGATATTCTGGAAACCAACGACCCTGGATTTGTCAAAACAGATATGAACTTCAATACTGGCATGTTAACCATTGATGAAGGTGCTGAGAGTGTTGTGAGGTTAGCTATGGTTCCAAATGGCAGCCCTTATGGCCTCTACTTCTATTTACAACAAGTCTCACCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

247

Amino Acids

26.43

Weight (kDa)

4.68

Isoelectric Point (pI)

21.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 312
AciI CCGC 1 cut(s) 137
AclWI GGATC 3 cut(s) 137, 366, 466
AcuI CTGAAG 1 cut(s) 339
AgsI TTSAA 8 cut(s) 81, 123, 173, 182, 190, 547, 568, 625
AjnI CCWGG 1 cut(s) 595
AluBI AGCT 6 cut(s) 176, 202, 332, 341, 410, 677
AluI AGCT 6 cut(s) 176, 202, 332, 341, 410, 677
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 3 cut(s) 137, 366, 466
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 3 cut(s) 166, 486, 703
ApeKI GCWGC 7 cut(s) 218, 230, 332, 335, 338, 341, 693
ArsI GACNNNNNNTTYG 2 cut(s) 584, 616
Asp700I GAANNNNTTC 1 cut(s) 576
AspS9I GGNCC 2 cut(s) 166, 486
AsuHPI GGTGA 2 cut(s) 417, 723
BbvI GCAGC 7 cut(s) 205, 217, 319, 322, 328, 350, 705
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 733
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 3 cut(s) 309, 336, 342
BfuAI ACCTGC 1 cut(s) 335
BglI GCCNNNNNGGC 1 cut(s) 702
BisI GCNGC 7 cut(s) 219, 231, 333, 336, 339, 342, 694
BlsI GCNGC 7 cut(s) 220, 232, 334, 337, 340, 343, 695
Bme1390I CCNGG 1 cut(s) 597
BmgT120I GGNCC 2 cut(s) 166, 486
BmiI GGNNCC 2 cut(s) 304, 684
BmrFI CCNGG 1 cut(s) 597
BmsI GCATC 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 595
Bse1I ACTGG 1 cut(s) 634
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 597
BseDI CCNNGG 1 cut(s) 595
BseGI GGATG 1 cut(s) 501
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 501, 648
BseNI ACTGG 1 cut(s) 634
BseXI GCAGC 7 cut(s) 205, 217, 319, 322, 328, 350, 705
BshFI GGCC 3 cut(s) 168, 488, 705
BsiSI CCGG 1 cut(s) 450
BsmAI GTCTC 1 cut(s) 733
BsnI GGCC 3 cut(s) 168, 488, 705
Bsp143I GATC 3 cut(s) 129, 358, 458
BspACI CCGC 1 cut(s) 137
BspANI GGCC 3 cut(s) 168, 488, 705
BspCNI CTCAG 2 cut(s) 502, 649
BspLI GGNNCC 2 cut(s) 304, 684
BspMAI CTGCAG 2 cut(s) 340, 346
BspMI ACCTGC 1 cut(s) 335
BspPI GGATC 3 cut(s) 137, 366, 466
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 1 cut(s) 634
BssECI CCNNGG 1 cut(s) 595
BssMI GATC 3 cut(s) 129, 358, 458
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 2 cut(s) 106, 310
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 2 cut(s) 218, 245
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 510, 657
BstF5I GGATG 1 cut(s) 501
BstKTI GATC 3 cut(s) 132, 361, 461
BstMAI GTCTC 1 cut(s) 733
BstMBI GATC 3 cut(s) 129, 358, 458
BstMWI GCNNNNNNNGC 9 cut(s) 50, 218, 227, 236, 245, 329, 338, 341, 702
BstNI CCWGG 1 cut(s) 597
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 1 cut(s) 595
BstSFI CTRYAG 3 cut(s) 309, 336, 342
BstV1I GCAGC 7 cut(s) 205, 217, 319, 322, 328, 350, 705
BstXI CCANNNNNNTGG 1 cut(s) 483
BsuRI GGCC 3 cut(s) 168, 488, 705
BtsCI GGATG 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 306
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 166, 486
CseI GACGC 1 cut(s) 224
CviAII CATG 4 cut(s) 133, 325, 454, 634
DdeI CTNAG 2 cut(s) 510, 657
DpnI GATC 3 cut(s) 131, 360, 460
DpnII GATC 3 cut(s) 129, 358, 458
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco32I GATATC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 595
EcoRV GATATC 1 cut(s) 274
FaeI CATG 4 cut(s) 136, 328, 457, 637
FatI CATG 4 cut(s) 132, 324, 453, 633
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 7 cut(s) 219, 231, 333, 336, 339, 342, 694
FokI GGATG 1 cut(s) 508
Fsp4HI GCNGC 7 cut(s) 219, 231, 333, 336, 339, 342, 694
FspBI CTAG 1 cut(s) 269
GluI GCNGC 7 cut(s) 219, 231, 333, 336, 339, 342, 694
HaeIII GGCC 3 cut(s) 168, 488, 705
HapII CCGG 1 cut(s) 450
HgaI GACGC 1 cut(s) 224
Hin1II CATG 4 cut(s) 136, 328, 457, 637
HincII GTYRAC 2 cut(s) 144, 639
HindII GTYRAC 2 cut(s) 144, 639
HinfI GANTC 3 cut(s) 27, 391, 422
HpaI GTTAAC 2 cut(s) 144, 639
HpaII CCGG 1 cut(s) 450
HphI GGTGA 2 cut(s) 417, 723
Hpy166II GTNNAC 3 cut(s) 144, 313, 639
Hpy188I TCNGA 2 cut(s) 13, 421
Hpy188III TCNNGA 2 cut(s) 24, 581
Hpy8I GTNNAC 3 cut(s) 144, 313, 639
HpyAV CCTTC 1 cut(s) 644
HpyCH4III ACNGT 2 cut(s) 106, 310
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 6 cut(s) 4, 65, 239, 290, 338, 344
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 218, 227, 236, 245, 329, 338, 341, 702
HpyF3I CTNAG 2 cut(s) 510, 657
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 4 cut(s) 136, 328, 457, 637
KspAI GTTAAC 2 cut(s) 144, 639
Kzo9I GATC 3 cut(s) 129, 358, 458
Lsp1109I GCAGC 7 cut(s) 205, 217, 319, 322, 328, 350, 705
LweI GCATC 1 cut(s) 496
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 70
MalI GATC 3 cut(s) 131, 360, 460
MboI GATC 3 cut(s) 129, 358, 458
MboII GAAGA 3 cut(s) 438, 536, 584
MluCI AATT 4 cut(s) 185, 257, 373, 413
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 2 cut(s) 663, 716
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 5 cut(s) 143, 282, 464, 500, 638
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 1 cut(s) 597
MvaI CCWGG 1 cut(s) 597
MwoI GCNNNNNNNGC 9 cut(s) 50, 218, 227, 236, 245, 329, 338, 341, 702
NdeII GATC 3 cut(s) 129, 358, 458
NlaIII CATG 4 cut(s) 136, 328, 457, 637
NlaIV GGNNCC 2 cut(s) 304, 684
NspI RCATGY 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 27, 422
PkrI GCNGC 7 cut(s) 220, 232, 334, 337, 340, 343, 695
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 595
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 2 cut(s) 304, 684
PspPI GGNCC 2 cut(s) 166, 486
PstI CTGCAG 2 cut(s) 340, 346
PstNI CAGNNNCTG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 5 cut(s) 143, 282, 464, 500, 638
SatI GCNGC 7 cut(s) 219, 231, 333, 336, 339, 342, 694
Sau3AI GATC 3 cut(s) 129, 358, 458
Sau96I GGNCC 2 cut(s) 166, 486
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 597
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 3 cut(s) 309, 336, 342
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 4 cut(s) 185, 257, 373, 413
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 595
TaaI ACNGT 2 cut(s) 106, 310
TaiI ACGT 1 cut(s) 401
TasI AATT 4 cut(s) 185, 257, 373, 413
TfiI GAWTC 2 cut(s) 27, 422
Tru1I TTAA 5 cut(s) 143, 282, 464, 500, 638
Tru9I TTAA 5 cut(s) 143, 282, 464, 500, 638
TscAI CASTG 1 cut(s) 313
TseI GCWGC 7 cut(s) 218, 230, 332, 335, 338, 341, 693
TspDTI ATGAA 3 cut(s) 495, 632, 663
TspRI CASTG 1 cut(s) 313
XceI RCATGY 1 cut(s) 637
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.