Prupe.2G161800_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000170
Physical Location & Seq
Forward (+)
21288257 .. 21290375
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G161800.1

Sequence Viewer

Length: 900 bp
ATGGCAGAAGCAGGAAAGAGGTATGCAGTTGTTACAGGTTCAAATAAGGGAGTTGGATTTGGAATAGTTAGGCAGCTGGCTTCAAATGGGGTCATGGCAGTGTTGACCGCTAGAGATGAGAAGAAGGGTATTGAAGCTGTTGAAAAATTAAAAGAGTGTGGCCTCTCAGACCTTGTGGTTTTTCATCAGCTTGATGTCACAGACTCTTCTAGCATTGCTTCCCTGGCAGATTTTGTCACAATCCAGTTTGGGAAACTAGACATCTTGGTAAACAATGCAGGGGTTAATGGAACCATTATGGACCCTGAAGCTCTCAGAGCTGCTGCAGCTGCAGGACTTGGTAAGAAAGATGTAGAGGTCAAGTGGAGTGAAATGTTGACTCAGACATATGAGTTAACTGAAGAATGCATTAAAACAAACTACTATGGTACCAAGAAAATGACCAAAACATTTCTTCCTCTCCTCCAGCTATCCGATTCACCAAGAGTTGTCAATATTTCTTCTGGCCGGGGGAGGTTAAAGCTTATACCAAATGAATGGGCCAAAGGGGTGTTGAATGATGCTGAGAAACTTACAGAAGAGAGAATAGAAGAGGTTTTGAATGAGTTTCTAAGAGATTTCAAAGAAGACATGCTGGAAACCAAATGCTGGCCTCCTGCCCTCTCTGCGTATATACTCTCAAAAGCAGCCTTGAATGCATACACTAGAATTGTGGCCAAGAAGTACCCAAATTTGTGTGTCAATTGCATCTGCCCTGGATTTGTCAAAACAGACATGACCTTCAATGCTGGCATCTTCACCGTTGACGAAGCTGCTGAAAATGTTATGCGCTTAGCAGTATTTCCAAGTGGCATTCCTTCTGGCCTCTTCTTCTTTTCTCAAGAAGTCACTCCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

300

Amino Acids

32.79

Weight (kDa)

5.52

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 648
AciI CCGC 1 cut(s) 108
AcoI YGGCCR 2 cut(s) 505, 714
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 2 cut(s) 327, 420
AfaI GTAC 2 cut(s) 430, 725
AfiI CCNNNNNNNGG 1 cut(s) 648
AgsI TTSAA 9 cut(s) 42, 84, 134, 143, 556, 601, 622, 694, 784
AjnI CCWGG 2 cut(s) 222, 754
AluBI AGCT 9 cut(s) 76, 137, 190, 311, 320, 329, 469, 523, 812
AluI AGCT 9 cut(s) 76, 137, 190, 311, 320, 329, 469, 523, 812
AoxI GGCC 6 cut(s) 160, 505, 540, 650, 714, 862
ApeKI GCWGC 7 cut(s) 73, 320, 323, 326, 329, 686, 812
ApoI RAATTY 1 cut(s) 730
Asp718I GGTACC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 2 cut(s) 301, 540
AsuC2I CCSGG 1 cut(s) 509
AsuHPI GGTGA 2 cut(s) 471, 790
AvaII GGWCC 1 cut(s) 301
BaeI ACNNNNGTAYC 2 cut(s) 412, 445
BalI TGGCCA 1 cut(s) 716
BanI GGYRCC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 633
BbvI GCAGC 7 cut(s) 85, 307, 310, 316, 338, 698, 799
BciT130I CCWGG 2 cut(s) 224, 756
BcnI CCSGG 1 cut(s) 509
BfaI CTAG 4 cut(s) 111, 210, 257, 705
BfmI CTRYAG 2 cut(s) 324, 330
BisI GCNGC 7 cut(s) 74, 321, 324, 327, 330, 687, 813
BlpI GCTNAGC 1 cut(s) 832
BlsI GCNGC 7 cut(s) 75, 322, 325, 328, 331, 688, 814
Bme1390I CCNGG 3 cut(s) 224, 509, 756
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 301, 540
BmiI GGNNCC 3 cut(s) 292, 303, 430
BmrFI CCNGG 3 cut(s) 224, 509, 756
BmsI GCATC 3 cut(s) 550, 756, 801
BpiI GAAGAC 1 cut(s) 633
BpmI CTGGAG 1 cut(s) 449
Bpu1102I GCTNAGC 1 cut(s) 832
BpuEI CTTGAG 1 cut(s) 864
BpuMI CCSGG 1 cut(s) 509
BsaJI CCNNGG 3 cut(s) 222, 508, 754
Bsc4I CCNNNNNNNGG 1 cut(s) 648
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 2 cut(s) 224, 756
BseDI CCNNGG 3 cut(s) 222, 508, 754
BseLI CCNNNNNNNGG 1 cut(s) 648
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 4 cut(s) 180, 328, 395, 555
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 7 cut(s) 85, 307, 310, 316, 338, 698, 799
BshFI GGCC 6 cut(s) 162, 507, 542, 652, 716, 864
BshNI GGYRCC 1 cut(s) 428
BsiSI CCGG 1 cut(s) 508
BslI CCNNNNNNNGG 1 cut(s) 648
BsmI GAATGC 3 cut(s) 410, 700, 852
BsnI GGCC 6 cut(s) 162, 507, 542, 652, 716, 864
Bsp1720I GCTNAGC 1 cut(s) 832
BspACI CCGC 1 cut(s) 108
BspANI GGCC 6 cut(s) 162, 507, 542, 652, 716, 864
BspCNI CTCAG 4 cut(s) 179, 327, 394, 556
BspLI GGNNCC 3 cut(s) 292, 303, 430
BspMAI CTGCAG 2 cut(s) 328, 334
BspT107I GGYRCC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 222, 508, 754
Bst2UI CCWGG 2 cut(s) 224, 756
Bst4CI ACNGT 1 cut(s) 802
Bst6I CTCTTC 4 cut(s) 211, 573, 585, 872
BstC8I GCNNGC 3 cut(s) 78, 650, 790
BstDEI CTNAG 6 cut(s) 166, 314, 381, 564, 611, 832
BstHHI GCGC 1 cut(s) 831
BstMWI GCNNNNNNNGC 6 cut(s) 224, 317, 326, 329, 665, 695
BstNI CCWGG 2 cut(s) 224, 756
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 3 cut(s) 222, 507, 754
BstSFI CTRYAG 2 cut(s) 324, 330
BstV1I GCAGC 7 cut(s) 85, 307, 310, 316, 338, 698, 799
BstV2I GAAGAC 1 cut(s) 633
BstXI CCANNNNNNTGG 1 cut(s) 537
BsuRI GGCC 6 cut(s) 162, 507, 542, 652, 716, 864
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 78, 650, 790
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 2 cut(s) 301, 540
Csp6I GTAC 2 cut(s) 429, 724
CviAII CATG 3 cut(s) 94, 631, 775
CviQI GTAC 2 cut(s) 429, 724
DdeI CTNAG 6 cut(s) 166, 314, 381, 564, 611, 832
EaeI YGGCCR 2 cut(s) 505, 714
Eam1104I CTCTTC 4 cut(s) 211, 573, 585, 872
EarI CTCTTC 4 cut(s) 211, 573, 585, 872
Eco47I GGWCC 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 327, 420
EcoRII CCWGG 2 cut(s) 222, 754
EcoT22I ATGCAT 2 cut(s) 410, 700
FaeI CATG 3 cut(s) 97, 634, 778
FatI CATG 3 cut(s) 93, 630, 774
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 7 cut(s) 74, 321, 324, 327, 330, 687, 813
Fsp4HI GCNGC 7 cut(s) 74, 321, 324, 327, 330, 687, 813
FspBI CTAG 4 cut(s) 111, 210, 257, 705
GlaI GCGC 1 cut(s) 830
GluI GCNGC 7 cut(s) 74, 321, 324, 327, 330, 687, 813
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 6 cut(s) 162, 507, 542, 652, 716, 864
HapII CCGG 1 cut(s) 508
HhaI GCGC 1 cut(s) 831
Hin1II CATG 3 cut(s) 97, 634, 778
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 4 cut(s) 105, 378, 396, 805
HindII GTYRAC 4 cut(s) 105, 378, 396, 805
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 3 cut(s) 203, 379, 476
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 1 cut(s) 508
HphI GGTGA 2 cut(s) 471, 790
Hpy166II GTNNAC 5 cut(s) 105, 271, 378, 396, 805
Hpy188I TCNGA 4 cut(s) 169, 317, 384, 475
Hpy188III TCNNGA 1 cut(s) 881
Hpy8I GTNNAC 5 cut(s) 105, 271, 378, 396, 805
HpyAV CCTTC 3 cut(s) 118, 790, 867
HpyCH4III ACNGT 1 cut(s) 802
HpyCH4V TGCA 7 cut(s) 26, 278, 326, 332, 408, 698, 747
HpyF10VI GCNNNNNNNGC 6 cut(s) 224, 317, 326, 329, 665, 695
HpyF3I CTNAG 6 cut(s) 166, 314, 381, 564, 611, 832
Hsp92II CATG 3 cut(s) 97, 634, 778
HspAI GCGC 1 cut(s) 829
KpnI GGTACC 1 cut(s) 432
KspAI GTTAAC 1 cut(s) 396
Lsp1109I GCAGC 7 cut(s) 85, 307, 310, 316, 338, 698, 799
LweI GCATC 3 cut(s) 550, 756, 801
MaeI CTAG 4 cut(s) 111, 210, 257, 705
MaeIII GTNAC 4 cut(s) 31, 196, 235, 886
MfeI CAATTG 1 cut(s) 742
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 4 cut(s) 146, 708, 730, 742
MluNI TGGCCA 1 cut(s) 716
MlyI GAGTC 2 cut(s) 197, 373
MmeI TCCRAC 1 cut(s) 34
Mox20I TGGCCA 1 cut(s) 716
Mph1103I ATGCAT 2 cut(s) 410, 700
MscI TGGCCA 1 cut(s) 716
MseI TTAA 5 cut(s) 149, 285, 395, 411, 518
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 2 cut(s) 76, 329
MspI CCGG 1 cut(s) 508
MspR9I CCNGG 3 cut(s) 224, 509, 756
MunI CAATTG 1 cut(s) 742
Mva1269I GAATGC 3 cut(s) 410, 700, 852
MvaI CCWGG 2 cut(s) 224, 756
MwoI GCNNNNNNNGC 6 cut(s) 224, 317, 326, 329, 665, 695
NciI CCSGG 1 cut(s) 509
NdeI CATATG 1 cut(s) 388
NlaIII CATG 3 cut(s) 97, 634, 778
NlaIV GGNNCC 3 cut(s) 292, 303, 430
NmuCI GTSAC 3 cut(s) 196, 235, 886
NsiI ATGCAT 2 cut(s) 410, 700
NspI RCATGY 1 cut(s) 634
PctI GAATGC 3 cut(s) 410, 700, 852
PfeI GAWTC 1 cut(s) 476
PflMI CCANNNNNTGG 1 cut(s) 648
PkrI GCNGC 7 cut(s) 75, 322, 325, 328, 331, 688, 814
PleI GAGTC 2 cut(s) 197, 373
PpsI GAGTC 2 cut(s) 197, 373
Psp6I CCWGG 2 cut(s) 222, 754
PspGI CCWGG 2 cut(s) 222, 754
PspN4I GGNNCC 3 cut(s) 292, 303, 430
PspPI GGNCC 2 cut(s) 301, 540
PstI CTGCAG 2 cut(s) 328, 334
PvuII CAGCTG 2 cut(s) 76, 329
RsaI GTAC 2 cut(s) 430, 725
RsaNI GTAC 2 cut(s) 429, 724
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 5 cut(s) 149, 285, 395, 411, 518
SatI GCNGC 7 cut(s) 74, 321, 324, 327, 330, 687, 813
Sau96I GGNCC 2 cut(s) 301, 540
SchI GAGTC 2 cut(s) 197, 373
ScrFI CCNGG 3 cut(s) 224, 509, 756
SfaNI GCATC 3 cut(s) 550, 756, 801
SfcI CTRYAG 2 cut(s) 324, 330
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 879
SmoI CTYRAG 1 cut(s) 879
Sse9I AATT 4 cut(s) 146, 708, 730, 742
SsiI CCGC 1 cut(s) 108
SspI AATATT 1 cut(s) 496
SspMI CTAG 4 cut(s) 111, 210, 257, 705
StyD4I CCNGG 3 cut(s) 222, 507, 754
TaaI ACNGT 1 cut(s) 802
TasI AATT 4 cut(s) 146, 708, 730, 742
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 5 cut(s) 149, 285, 395, 411, 518
Tru9I TTAA 5 cut(s) 149, 285, 395, 411, 518
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 3 cut(s) 196, 235, 886
TseI GCWGC 7 cut(s) 73, 320, 323, 326, 329, 686, 812
Tsp45I GTSAC 3 cut(s) 196, 235, 886
TspDTI ATGAA 2 cut(s) 173, 549
TspRI CASTG 1 cut(s) 105
Van91I CCANNNNNTGG 1 cut(s) 648
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 730
XceI RCATGY 1 cut(s) 634
XspI CTAG 4 cut(s) 111, 210, 257, 705
Zsp2I ATGCAT 2 cut(s) 410, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.