Rh1BG218000

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000170
Physical Location & Seq
Forward (+)
33771628 .. 33773129
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG218000.1

Sequence Viewer

Length: 903 bp
ATGGCAGAATCAACTATGAGGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTTGAAACTTTAAGGCAGTTGGCCTCGACTGGAATCACTGCGGTGTTAACTGCAAGAGATGAGAAGAGAGGCCTTGAAGCTGTTGAGAAGCTGAAAGAGTCTGGCCTCTCGGGCCAAGTAGTTTTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTGATTCTCTAGCACAATTCATCAAAACTCAGTTTGGGAAGCTCGATATTTTGGTGAACAATGCTGTAATTTTTGGAGCTACAGCTGATGTTGATGGTTTGAAAGCTGCAATTGCCTCTGGTGCTGTAAGGGAAGCAGGACAGATTGATTTCAAAAAGTTGTTGACTGAAACTTATGATTTAACAGAAGAATGCTTGCAAATCAATTATTATGGTACTAAAAGAACAACTGAAGCCCTGATTCCACTCCTTCAGCTATCTGATTCACCAAGAATCGTTAATGTTTCATCCTCTATGGGGAAATTAGAGAACATACCAAGTGATTGGGTGAAAGGAATTCTCAGTACTGATGTGGAGAACCTAAGCGAAGAGAGTGTAGATGAAGTATTGACAGAGTTTCTAAACAACCTCAAGGAGAGTTTACTTGAAAGCAAGGGCTGGCCTTCTGCGATGTCAGGCTATATACTCTCAAAAGCAGCAATGAATGCATATACGAGGATTCTAGCCAAGAAGTACCCCGGTTTTCGCGTCAACTCTGTCTGCCCTGGCTTTGTCAAAACAGATATAAACTTCAATACTGGTGTCTTGCCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTGATGATGGCCCCACAGGCCAATTCTTTTTTCGGTCTGAAGTACAAAGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

300

Amino Acids

32.43

Weight (kDa)

4.81

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 174 3.3e-25 short chain dehydrogenase
KR PF08659 10 - 97 4.1e-06 KR domain
adh_short_C2 PF13561 15 - 98 2.1e-13 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 214 - 261 2.2e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 741
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 549, 832
AcuI CTGAAG 2 cut(s) 449, 465
AfaI GTAC 4 cut(s) 430, 559, 728, 891
AfiI CCNNNNNNNGG 2 cut(s) 510, 854
AgsI TTSAA 7 cut(s) 62, 134, 316, 367, 641, 787, 809
AjnI CCWGG 1 cut(s) 757
AjuI GAANNNNNNNTTGG 4 cut(s) 165, 197, 861, 893
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 7 cut(s) 137, 148, 256, 293, 299, 320, 469
AluI AGCT 7 cut(s) 137, 148, 256, 293, 299, 320, 469
AlwI GGATC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 7 cut(s) 78, 127, 160, 169, 653, 856, 865
ApeKI GCWGC 4 cut(s) 320, 689, 818, 844
ApoI RAATTY 2 cut(s) 549, 832
AspS9I GGNCC 2 cut(s) 169, 857
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 4 cut(s) 176, 280, 471, 553
AvaI CYCGRG 1 cut(s) 166
BbvI GCAGC 4 cut(s) 307, 701, 805, 831
BccI CCATC 2 cut(s) 302, 848
BciT130I CCWGG 1 cut(s) 759
BcnI CCSGG 1 cut(s) 732
BfaI CTAG 3 cut(s) 210, 224, 716
BfmI CTRYAG 1 cut(s) 294
BglI GCCNNNNNGGC 2 cut(s) 168, 864
BisI GCNGC 4 cut(s) 321, 690, 819, 845
BlsI GCNGC 4 cut(s) 322, 691, 820, 846
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 2 cut(s) 732, 759
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 169, 857
BmiI GGNNCC 1 cut(s) 859
BmrFI CCNGG 2 cut(s) 732, 759
Bpu10I CCTNAGC 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 732
BsaJI CCNNGG 2 cut(s) 730, 757
Bsc4I CCNNNNNNNGG 2 cut(s) 510, 854
Bse1I ACTGG 2 cut(s) 91, 796
Bse3DI GCAATG 2 cut(s) 699, 839
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 2 cut(s) 730, 757
BseGI GGATG 1 cut(s) 500
BseLI CCNNNNNNNGG 2 cut(s) 510, 854
BseMI GCAATG 2 cut(s) 699, 839
BseMII CTCAG 2 cut(s) 257, 568
BseNI ACTGG 2 cut(s) 91, 796
BseXI GCAGC 4 cut(s) 307, 701, 805, 831
Bsh1236I CGCG 1 cut(s) 741
BshFI GGCC 7 cut(s) 80, 129, 162, 171, 655, 858, 867
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 732
BslI CCNNNNNNNGG 2 cut(s) 510, 854
BsmI GAATGC 2 cut(s) 410, 703
BsnI GGCC 7 cut(s) 80, 129, 162, 171, 655, 858, 867
BsoBI CYCGRG 1 cut(s) 166
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 1 cut(s) 98
BspANI GGCC 7 cut(s) 80, 129, 162, 171, 655, 858, 867
BspCNI CTCAG 2 cut(s) 256, 567
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 1 cut(s) 859
BspPI GGATC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 699, 839
BsrI ACTGG 2 cut(s) 91, 796
BssECI CCNNGG 2 cut(s) 730, 757
BssMI GATC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 759
Bst6I CTCTTC 2 cut(s) 116, 576
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 2 cut(s) 410, 653
BstDEI CTNAG 3 cut(s) 243, 554, 575
BstF5I GGATG 1 cut(s) 500
BstFNI CGCG 1 cut(s) 741
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 6 cut(s) 168, 206, 326, 335, 698, 864
BstNI CCWGG 1 cut(s) 759
BstSCI CCNGG 2 cut(s) 730, 757
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 4 cut(s) 307, 701, 805, 831
BstXI CCANNNNNNTGG 1 cut(s) 537
BsuRI GGCC 7 cut(s) 80, 129, 162, 171, 655, 858, 867
BtgZI GCGATG 1 cut(s) 677
BtsCI GGATG 1 cut(s) 500
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 410, 653
Cfr13I GGNCC 2 cut(s) 169, 857
CseI GACGC 1 cut(s) 730
Csp6I GTAC 4 cut(s) 429, 558, 727, 890
CviQI GTAC 4 cut(s) 429, 558, 727, 890
DdeI CTNAG 3 cut(s) 243, 554, 575
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 116, 576
EarI CTCTTC 2 cut(s) 116, 576
Eco147I AGGCCT 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 449, 465
Eco88I CYCGRG 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 757
EcoT22I ATGCAT 1 cut(s) 703
Fnu4HI GCNGC 4 cut(s) 321, 690, 819, 845
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 4 cut(s) 321, 690, 819, 845
FspBI CTAG 3 cut(s) 210, 224, 716
GluI GCNGC 4 cut(s) 321, 690, 819, 845
HaeIII GGCC 7 cut(s) 80, 129, 162, 171, 655, 858, 867
HapII CCGG 1 cut(s) 732
HgaI GACGC 1 cut(s) 730
HincII GTYRAC 3 cut(s) 105, 378, 745
HindII GTYRAC 3 cut(s) 105, 378, 745
HinfI GANTC 9 cut(s) 8, 51, 90, 155, 218, 454, 476, 486, 712
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 732
HphI GGTGA 4 cut(s) 176, 280, 471, 553
Hpy166II GTNNAC 5 cut(s) 105, 271, 378, 635, 745
Hpy188I TCNGA 3 cut(s) 56, 475, 886
Hpy188III TCNNGA 1 cut(s) 829
Hpy8I GTNNAC 5 cut(s) 105, 271, 378, 635, 745
HpyAV CCTTC 3 cut(s) 473, 666, 806
HpyCH4V TGCA 6 cut(s) 26, 110, 323, 412, 701, 821
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 206, 326, 335, 698, 864
HpyF3I CTNAG 3 cut(s) 243, 554, 575
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 4 cut(s) 307, 701, 805, 831
MaeI CTAG 3 cut(s) 210, 224, 716
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 4 cut(s) 133, 413, 593, 821
MfeI CAATTG 1 cut(s) 324
MluCI AATT 8 cut(s) 230, 282, 324, 418, 515, 549, 832, 869
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 8 cut(s) 12, 91, 119, 173, 340, 514, 632, 702
Mph1103I ATGCAT 1 cut(s) 703
MseI TTAA 5 cut(s) 68, 104, 395, 492, 901
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 732
MspR9I CCNGG 2 cut(s) 732, 759
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 410, 703
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 6 cut(s) 168, 206, 326, 335, 698, 864
NciI CCSGG 1 cut(s) 732
NdeII GATC 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 859
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 703
OliI CACNNNNGTG 1 cut(s) 98
PceI AGGCCT 1 cut(s) 129
PctI GAATGC 2 cut(s) 410, 703
PfeI GAWTC 8 cut(s) 8, 51, 90, 218, 454, 476, 486, 712
PkrI GCNGC 4 cut(s) 322, 691, 820, 846
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 1 cut(s) 859
PspPI GGNCC 2 cut(s) 169, 857
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 4 cut(s) 430, 559, 728, 891
RsaNI GTAC 4 cut(s) 429, 558, 727, 890
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 5 cut(s) 68, 104, 395, 492, 901
SatI GCNGC 4 cut(s) 321, 690, 819, 845
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 2 cut(s) 169, 857
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 732, 759
SfcI CTRYAG 1 cut(s) 294
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 864
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 8 cut(s) 230, 282, 324, 418, 515, 549, 832, 869
SseBI AGGCCT 1 cut(s) 129
SsiI CCGC 1 cut(s) 98
SspMI CTAG 3 cut(s) 210, 224, 716
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 730, 757
TaqI TCGA 2 cut(s) 83, 258
TaqII GACCGA 1 cut(s) 870
TasI AATT 8 cut(s) 230, 282, 324, 418, 515, 549, 832, 869
TatI WGTACW 2 cut(s) 557, 889
TfiI GAWTC 8 cut(s) 8, 51, 90, 218, 454, 476, 486, 712
Tru1I TTAA 5 cut(s) 68, 104, 395, 492, 901
Tru9I TTAA 5 cut(s) 68, 104, 395, 492, 901
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 4 cut(s) 320, 689, 818, 844
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 223, 489, 609, 710
TspRI CASTG 1 cut(s) 100
XapI RAATTY 2 cut(s) 549, 832
XspI CTAG 3 cut(s) 210, 224, 716
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.