Rw1G021620

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000170
Physical Location & Seq
Forward (+)
45981155 .. 45982868
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021620.1

Sequence Viewer

Length: 900 bp
ATGGCGGAATCAACTAAGAGGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTTGAAACTGTAAGGCAGTTGGCCTCAAAGGGAATCACAGTGGTGTTAACTGCTAGAGACGAGAAGAGGGGCCTTGAAGCTGTTGAGAAACTGGAAGAATCTGGCCTCTCAGGCCAAGTAGTTTTTCACCAACTTGATGTGGCTAACCCTGCTAGTATTGCTTCTCTGGCACAATTCATCAAAACACAGTATGGAAAACTCGATATTTTGGTGAACAATGCTGCGATTTTCGGAGCTATAATTGATAATACTGATGGTTTTAAAGCTGCAATTGAATCTGGTGCTGGACCAGGACAGATTGATTATACAAAGTTGCTGACTGAAACTTATGAGTTAACAGAAGAATGCTTGCAAATCAATTATTATGGTGCTAAAAGAACAGCTGAAACACTAATTCCACTCCTCCAGCTATCTGATTCACCAAGGATTGTTAATGTTTCATCCTCCGCGGGGAAGTTAAAGAACATACCAAGTGATCGAGTGAAAGGAGTTCTTAGTACTGATGTCGAGAACCTGAGCGAAGAGAGTGTAGATGAAATATTAACAGAGTTTCTAAACGACCTCAAGGAGAATTTACTTGAAAGCAAGGGTTGGCCTCCTGCGATGTCAGGCTATACAGTCTCAAAAGCAGCAATGAATGCATATACAAGGATTCTAGCCAAGAAGTACCCTGGTTTTCGCGTCAACTCGGTCTGCCCTGGCTTTGCCAAAACAGATATAAACTTAAATACCGGTGGCTTGCCTGTTGAAGAAGGTGCTTTAAGTGTCGTGAATTTAGCATTGCTGCCTAATGATGGCCCCACAGGCCAATTCTTTTTTCGGTCTGAAGTACAGAGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

299

Amino Acids

32.2

Weight (kDa)

5.03

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 173 1.3e-26 short chain dehydrogenase
KR PF08659 10 - 96 8.9e-07 KR domain
adh_short_C2 PF13561 15 - 177 4.1e-18 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 219 - 260 2.6e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 506, 738
AciI CCGC 3 cut(s) 5, 504, 506
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 628, 829
AfaI GTAC 3 cut(s) 556, 725, 888
AfiI CCNNNNNNNGG 2 cut(s) 507, 851
AgeI ACCGGT 1 cut(s) 788
AgsI TTSAA 5 cut(s) 62, 134, 332, 638, 806
AjnI CCWGG 3 cut(s) 346, 727, 754
AjuI GAANNNNNNNTTGG 4 cut(s) 165, 197, 858, 890
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 5 cut(s) 137, 293, 323, 440, 466
AluI AGCT 5 cut(s) 137, 293, 323, 440, 466
Alw26I GTCTC 2 cut(s) 108, 682
AlwI GGATC 1 cut(s) 46
AoxI GGCC 7 cut(s) 78, 127, 160, 169, 650, 853, 862
ApeKI GCWGC 4 cut(s) 278, 323, 686, 841
ApoI RAATTY 2 cut(s) 628, 829
AsiGI ACCGGT 1 cut(s) 788
AspS9I GGNCC 3 cut(s) 127, 344, 854
AsuHPI GGTGA 3 cut(s) 176, 280, 468
AvaII GGWCC 1 cut(s) 344
BbvI GCAGC 4 cut(s) 265, 310, 698, 828
BccI CCATC 2 cut(s) 305, 845
BciT130I CCWGG 3 cut(s) 348, 729, 756
BcoDI GTCTC 2 cut(s) 108, 682
BfaI CTAG 3 cut(s) 111, 210, 713
BglI GCCNNNNNGGC 2 cut(s) 168, 861
BisI GCNGC 4 cut(s) 279, 324, 687, 842
BlsI GCNGC 4 cut(s) 280, 325, 688, 843
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 3 cut(s) 348, 729, 756
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 3 cut(s) 127, 344, 854
BmiI GGNNCC 2 cut(s) 128, 856
BmrFI CCNGG 3 cut(s) 348, 729, 756
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 605
BsaJI CCNNGG 4 cut(s) 479, 504, 727, 754
BsaWI WCCGGW 1 cut(s) 788
Bsc4I CCNNNNNNNGG 2 cut(s) 507, 851
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 153
Bse3DI GCAATG 2 cut(s) 696, 836
BseBI CCWGG 3 cut(s) 348, 729, 756
BseDI CCNNGG 4 cut(s) 479, 504, 727, 754
BseGI GGATG 1 cut(s) 497
BseLI CCNNNNNNNGG 2 cut(s) 507, 851
BseMI GCAATG 2 cut(s) 696, 836
BseMII CTCAG 2 cut(s) 180, 563
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 449
BseXI GCAGC 4 cut(s) 265, 310, 698, 828
Bsh1236I CGCG 2 cut(s) 506, 738
BshFI GGCC 7 cut(s) 80, 129, 162, 171, 652, 855, 864
BshTI ACCGGT 1 cut(s) 788
BsiSI CCGG 1 cut(s) 789
BslI CCNNNNNNNGG 2 cut(s) 507, 851
BsmAI GTCTC 2 cut(s) 108, 682
BsmBI CGTCTC 1 cut(s) 108
BsmI GAATGC 2 cut(s) 407, 700
BsnI GGCC 7 cut(s) 80, 129, 162, 171, 652, 855, 864
Bsp143I GATC 2 cut(s) 38, 532
BspACI CCGC 3 cut(s) 5, 504, 506
BspANI GGCC 7 cut(s) 80, 129, 162, 171, 652, 855, 864
BspCNI CTCAG 2 cut(s) 179, 564
BspFNI CGCG 2 cut(s) 506, 738
BspLI GGNNCC 2 cut(s) 128, 856
BspPI GGATC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 696, 836
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 4 cut(s) 479, 504, 727, 754
BssMI GATC 2 cut(s) 38, 532
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 3 cut(s) 348, 729, 756
Bst4CI ACNGT 4 cut(s) 67, 97, 246, 676
Bst6I CTCTTC 2 cut(s) 116, 573
BstAPI GCANNNNNTGC 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 407, 797
BstDEI CTNAG 4 cut(s) 15, 166, 551, 572
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 1 cut(s) 497
BstFNI CGCG 2 cut(s) 506, 738
BstKTI GATC 2 cut(s) 41, 535
BstMAI GTCTC 2 cut(s) 108, 682
BstMBI GATC 2 cut(s) 38, 532
BstMWI GCNNNNNNNGC 6 cut(s) 168, 206, 215, 224, 695, 861
BstNI CCWGG 3 cut(s) 348, 729, 756
BstSCI CCNGG 3 cut(s) 346, 727, 754
BstUI CGCG 2 cut(s) 506, 738
BstV1I GCAGC 4 cut(s) 265, 310, 698, 828
BsuRI GGCC 7 cut(s) 80, 129, 162, 171, 652, 855, 864
BtgI CCRYGG 1 cut(s) 504
BtgZI GCGATG 1 cut(s) 674
BtsCI GGATG 1 cut(s) 497
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 407, 797
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 3 cut(s) 127, 344, 854
Cfr42I CCGCGG 1 cut(s) 507
CseI GACGC 1 cut(s) 727
Csp6I GTAC 3 cut(s) 555, 724, 887
CspAI ACCGGT 1 cut(s) 788
CviQI GTAC 3 cut(s) 555, 724, 887
DdeI CTNAG 4 cut(s) 15, 166, 551, 572
DpnI GATC 2 cut(s) 40, 534
DpnII GATC 2 cut(s) 38, 532
DraI TTTAAA 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 116, 573
EarI CTCTTC 2 cut(s) 116, 573
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 3 cut(s) 346, 727, 754
EcoT14I CCWWGG 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 479
Esp3I CGTCTC 1 cut(s) 108
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FauI CCCGC 1 cut(s) 499
Fnu4HI GCNGC 4 cut(s) 279, 324, 687, 842
FokI GGATG 1 cut(s) 484
Fsp4HI GCNGC 4 cut(s) 279, 324, 687, 842
FspBI CTAG 3 cut(s) 111, 210, 713
GluI GCNGC 4 cut(s) 279, 324, 687, 842
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 7 cut(s) 80, 129, 162, 171, 652, 855, 864
HapII CCGG 1 cut(s) 789
HgaI GACGC 1 cut(s) 727
HincII GTYRAC 3 cut(s) 105, 393, 742
HindII GTYRAC 3 cut(s) 105, 393, 742
HinfI GANTC 8 cut(s) 8, 51, 90, 155, 332, 473, 709, 892
HpaI GTTAAC 2 cut(s) 105, 393
HpaII CCGG 1 cut(s) 789
HphI GGTGA 3 cut(s) 176, 280, 468
Hpy166II GTNNAC 4 cut(s) 105, 271, 393, 742
Hpy188I TCNGA 4 cut(s) 56, 290, 472, 883
Hpy188III TCNNGA 2 cut(s) 565, 826
Hpy8I GTNNAC 4 cut(s) 105, 271, 393, 742
HpyAV CCTTC 1 cut(s) 803
HpyCH4III ACNGT 4 cut(s) 67, 97, 246, 676
HpyCH4V TGCA 4 cut(s) 26, 326, 409, 698
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 206, 215, 224, 695, 861
HpyF3I CTNAG 4 cut(s) 15, 166, 551, 572
KspAI GTTAAC 2 cut(s) 105, 393
KspI CCGCGG 1 cut(s) 507
Kzo9I GATC 2 cut(s) 38, 532
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 4 cut(s) 265, 310, 698, 828
MaeI CTAG 3 cut(s) 111, 210, 713
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 534
MboI GATC 2 cut(s) 38, 532
MboII GAAGA 5 cut(s) 133, 164, 410, 590, 818
MfeI CAATTG 1 cut(s) 327
MluCI AATT 8 cut(s) 230, 297, 327, 415, 450, 628, 829, 866
MnlI CCTC 8 cut(s) 12, 91, 117, 173, 470, 511, 629, 663
Mph1103I ATGCAT 1 cut(s) 700
MseI TTAA 9 cut(s) 104, 318, 392, 489, 515, 599, 782, 818, 898
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 2 cut(s) 440, 506
MspI CCGG 1 cut(s) 789
MspR9I CCNGG 3 cut(s) 348, 729, 756
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 2 cut(s) 407, 700
MvaI CCWGG 3 cut(s) 348, 729, 756
MvnI CGCG 2 cut(s) 506, 738
MwoI GCNNNNNNNGC 6 cut(s) 168, 206, 215, 224, 695, 861
NdeII GATC 2 cut(s) 38, 532
NlaIV GGNNCC 2 cut(s) 128, 856
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 700
OliI CACNNNNGTG 1 cut(s) 98
PctI GAATGC 2 cut(s) 407, 700
PfeI GAWTC 7 cut(s) 8, 51, 90, 155, 332, 473, 709
PinAI ACCGGT 1 cut(s) 788
PkrI GCNGC 4 cut(s) 280, 325, 688, 843
Psp6I CCWGG 3 cut(s) 346, 727, 754
PspGI CCWGG 3 cut(s) 346, 727, 754
PspN4I GGNNCC 2 cut(s) 128, 856
PspPI GGNCC 3 cut(s) 127, 344, 854
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 3 cut(s) 556, 725, 888
RsaNI GTAC 3 cut(s) 555, 724, 887
RseI CAYNNNNRTG 1 cut(s) 98
SacII CCGCGG 1 cut(s) 507
SaqAI TTAA 9 cut(s) 104, 318, 392, 489, 515, 599, 782, 818, 898
SatI GCNGC 4 cut(s) 279, 324, 687, 842
Sau3AI GATC 2 cut(s) 38, 532
Sau96I GGNCC 3 cut(s) 127, 344, 854
ScaI AGTACT 1 cut(s) 556
ScrFI CCNGG 3 cut(s) 348, 729, 756
SetI ASST 9 cut(s) 23, 139, 295, 325, 442, 468, 573, 621, 814
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 861
Sfr303I CCGCGG 1 cut(s) 507
SgrBI CCGCGG 1 cut(s) 507
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 8 cut(s) 230, 297, 327, 415, 450, 628, 829, 866
SsiI CCGC 3 cut(s) 5, 504, 506
SspI AATATT 1 cut(s) 597
SspMI CTAG 3 cut(s) 111, 210, 713
StyD4I CCNGG 3 cut(s) 346, 727, 754
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 4 cut(s) 67, 97, 246, 676
TaqI TCGA 3 cut(s) 258, 535, 564
TaqII GACCGA 2 cut(s) 736, 867
TasI AATT 8 cut(s) 230, 297, 327, 415, 450, 628, 829, 866
TatI WGTACW 2 cut(s) 554, 886
TfiI GAWTC 7 cut(s) 8, 51, 90, 155, 332, 473, 709
Tru1I TTAA 9 cut(s) 104, 318, 392, 489, 515, 599, 782, 818, 898
Tru9I TTAA 9 cut(s) 104, 318, 392, 489, 515, 599, 782, 818, 898
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 4 cut(s) 278, 323, 686, 841
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 223, 486, 606, 707
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 2 cut(s) 628, 829
XspI CTAG 3 cut(s) 111, 210, 713
ZrmI AGTACT 1 cut(s) 556
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.