MD07G1142300.v1.1

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000170
Physical Location & Seq
Reverse (-)
20578829 .. 20579513
685 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1142300.v1.1.491

Sequence Viewer

Length: 378 bp
ATGGTAGATGCTGGCTATTTTAAAGGTGCGAAAGAAGGTAAAGCCAATTGTAATAAAACAATGACTCAAACTTATGAGTTAGCAGAAGAGTGCTTGCAAACAGACTATTATGGGGCTAAAAGAACAGCTGAAGCACTTATTCCTCTCCTCCAGTTATCTAATTCGCCAAGAATTGTTAATATTTCATCTTCCATGGGAAAGATAAGCTTAATACCAATTGATTGGGCGAAAGAAGTTTTCAGTGATGCCAAGAGCCTAACAGAAGAAAGAATAGACGAGGTATTGGAGAGTTCCGGAAAGACTTTAAGGAGGGCTCACTTGAAAGCAAAGGATGGCCTTGTCTTCACTCTGCCTATACAGTTTCAAAAGCGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

126

Amino Acids

13.99

Weight (kDa)

8.53

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 150
AgsI TTSAA 2 cut(s) 322, 365
AluBI AGCT 2 cut(s) 128, 207
AluI AGCT 2 cut(s) 128, 207
Aor13HI TCCGGA 1 cut(s) 293
AoxI GGCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 334
BccI CCATC 1 cut(s) 326
BmsI GCATC 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 151
BseAI TCCGGA 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 337
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 336
BsiSI CCGG 1 cut(s) 294
BsnI GGCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 316
Bsp13I TCCGGA 1 cut(s) 293
Bsp19I CCATGG 1 cut(s) 192
BspANI GGCC 1 cut(s) 336
BspEI TCCGGA 1 cut(s) 293
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 13, 95
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 222
BsuRI GGCC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 13, 95
CviAII CATG 1 cut(s) 193
CviJI RGCY 8 cut(s) 15, 44, 116, 128, 207, 255, 314, 336
CviKI_1 RGCY 8 cut(s) 15, 44, 116, 128, 207, 255, 314, 336
DraI TTTAAA 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 1 cut(s) 196
FaiI YATR 4 cut(s) 75, 111, 194, 356
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 1 cut(s) 192
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 316
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 294
Hin1II CATG 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 97
Hsp92II CATG 1 cut(s) 196
Kpn2I TCCGGA 1 cut(s) 293
LpnPI CCDG 2 cut(s) 164, 307
LweI GCATC 1 cut(s) 235
MboII GAAGA 4 cut(s) 98, 180, 275, 334
MfeI CAATTG 2 cut(s) 46, 216
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 4 cut(s) 46, 160, 171, 216
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 4 cut(s) 153, 158, 271, 303
MroI TCCGGA 1 cut(s) 293
MseI TTAA 4 cut(s) 21, 177, 209, 305
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 294
MunI CAATTG 2 cut(s) 46, 216
NcoI CCATGG 1 cut(s) 192
NlaIII CATG 1 cut(s) 196
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 128
SaqAI TTAA 4 cut(s) 21, 177, 209, 305
SchI GAGTC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 316
SetI ASST 5 cut(s) 28, 40, 130, 209, 282
SfaNI GCATC 1 cut(s) 235
Sse9I AATT 4 cut(s) 46, 160, 171, 216
SspI AATATT 1 cut(s) 181
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 360
TasI AATT 4 cut(s) 46, 160, 171, 216
Tru1I TTAA 4 cut(s) 21, 177, 209, 305
Tru9I TTAA 4 cut(s) 21, 177, 209, 305
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.