Rh1BG218800

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000170
Physical Location & Seq
Forward (+)
33803000 .. 33803982
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG218800.1

Sequence Viewer

Length: 402 bp
ATGCTGGAAACCAAAGGCTGGCCTACTTCTCTTTCTGCATATATACTCTCCAAAGCAGCCTTGAATGCATACTCTAGAATTGTGGCCAAGAAGTACACAAACATCGGCGTCAATTGTGTCTGCCCTGGATTTGTTAAAACAGAAATGAGCTTCAATGCTGGTGTCTTAACCCCTGATGAAGCTGCTGAAATTATTGTGCGGTTAACAGTGTTTCCAAATGGCAATCCTTCTGGACTCTGCTTCTCTTCAGAAGAAGTCTCACCGTATGCAGTTGTCAGTACTGGTTCAAATAAGGGGCTTGGATTCAGACTAGTTAGGCAGTTGGCTTCAAATGGAGTCATAACTGTGCTAACTGCCAGAGATGAAAAGAAGGGTATTGTCTTGAAGCTGTTCAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

133

Amino Acids

14.26

Weight (kDa)

9.41

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 5 - 54 1.9e-07 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 10 - 50 3.7e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AciI CCGC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 95, 280
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 6 cut(s) 64, 154, 288, 330, 385, 394
AhlI ACTAGT 1 cut(s) 310
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 3 cut(s) 150, 182, 388
AluI AGCT 3 cut(s) 150, 182, 388
Alw26I GTCTC 1 cut(s) 262
AoxI GGCC 2 cut(s) 20, 84
ApeKI GCWGC 2 cut(s) 56, 182
Asp700I GAANNNNTTC 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 252
BalI TGGCCA 1 cut(s) 86
BbvI GCAGC 2 cut(s) 68, 169
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 262
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 2 cut(s) 75, 311
BisI GCNGC 2 cut(s) 57, 183
BlsI GCNGC 2 cut(s) 58, 184
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 2 cut(s) 68, 169
BshFI GGCC 2 cut(s) 22, 86
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 2 cut(s) 22, 86
BspACI CCGC 1 cut(s) 199
BspANI GGCC 2 cut(s) 22, 86
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 3 cut(s) 208, 264, 346
Bst6I CTCTTC 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 68, 169
BsuRI GGCC 2 cut(s) 22, 86
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 20
CseI GACGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 94, 279
CviJI RGCY 9 cut(s) 18, 22, 59, 86, 150, 182, 298, 326, 388
CviKI_1 RGCY 9 cut(s) 18, 22, 59, 86, 150, 182, 298, 326, 388
CviQI GTAC 2 cut(s) 94, 279
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 70
FaiI YATR 6 cut(s) 40, 42, 44, 70, 267, 341
Fnu4HI GCNGC 2 cut(s) 57, 183
Fsp4HI GCNGC 2 cut(s) 57, 183
FspBI CTAG 2 cut(s) 75, 311
GluI GCNGC 2 cut(s) 57, 183
HaeIII GGCC 2 cut(s) 22, 86
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 3 cut(s) 234, 303, 336
HpaI GTTAAC 1 cut(s) 204
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 2 cut(s) 96, 204
Hpy188I TCNGA 2 cut(s) 250, 308
Hpy188III TCNNGA 3 cut(s) 75, 231, 382
Hpy8I GTNNAC 2 cut(s) 96, 204
HpyAV CCTTC 2 cut(s) 237, 364
HpyCH4III ACNGT 3 cut(s) 208, 264, 346
HpyCH4V TGCA 3 cut(s) 38, 68, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 204
LpnPI CCDG 8 cut(s) 4, 111, 138, 144, 186, 216, 267, 370
Lsp1109I GCAGC 2 cut(s) 68, 169
MaeI CTAG 2 cut(s) 75, 311
MboII GAAGA 2 cut(s) 237, 263
MfeI CAATTG 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 4 cut(s) 78, 112, 189, 397
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 2 cut(s) 228, 345
Mox20I TGGCCA 1 cut(s) 86
Mph1103I ATGCAT 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 389
MscI TGGCCA 1 cut(s) 86
MseI TTAA 4 cut(s) 135, 167, 203, 400
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 70
PctI GAATGC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 303
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 2 cut(s) 58, 184
PleI GAGTC 2 cut(s) 228, 344
PpsI GAGTC 2 cut(s) 228, 344
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
RsaI GTAC 2 cut(s) 95, 280
RsaNI GTAC 2 cut(s) 94, 279
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 4 cut(s) 135, 167, 203, 400
SatI GCNGC 2 cut(s) 57, 183
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 2 cut(s) 228, 345
ScrFI CCNGG 1 cut(s) 126
SetI ASST 3 cut(s) 152, 184, 390
SmiMI CAYNNNNRTG 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 310
Sse9I AATT 4 cut(s) 78, 112, 189, 397
SsiI CCGC 1 cut(s) 199
SspMI CTAG 2 cut(s) 75, 311
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 3 cut(s) 208, 264, 346
TasI AATT 4 cut(s) 78, 112, 189, 397
TatI WGTACW 2 cut(s) 93, 278
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 4 cut(s) 135, 167, 203, 400
Tru9I TTAA 4 cut(s) 135, 167, 203, 400
TscAI CASTG 1 cut(s) 213
TseI GCWGC 2 cut(s) 56, 182
TspDTI ATGAA 2 cut(s) 192, 378
TspRI CASTG 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 18
XbaI TCTAGA 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 2 cut(s) 75, 311
ZrmI AGTACT 1 cut(s) 280
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.