Rh1BG218900

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000170
Physical Location & Seq
Forward (+)
33816005 .. 33817574
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG218900.1

Sequence Viewer

Length: 798 bp
ATGGCAGAAACAGTGAAGAGAAGGTATGCAGTTGTTACAGGTTCGAACAAGGGGGTTGGATTTGGAATAGTAAAGCAACTAGCTACAAATGGGGTCATGACAGTATTAACTGCTAGAGATGAGAAGAAGGATTTTGTCAAAACCCATTTTGGAAAACTGGATATCTTGGTGAACAATGCAGCAGTCAATGGACTCACTAACGAACCTGAAGCTTTCATAGCTGCAGCTGCAAATAGGGGAAAGGAAGGTGTGGACGTCCACTGGAGTGATTTTGCAACTCAGACATACGAGTTAGGCAAAGAATGTCTAAAAACAAACTACTATGGCACCAAGAAAATTACCGAAGCACTTGTTCCTCTCCTTGAGCTATCGGATTCACCAAGAGTAGTCAATATTAGTTCTGGCGCAGGGAGGTTAAAGCTTATACCGAACGAGTGGGCCAAAGGGGTGTTAGGTGATGCTGAGAAACTTACAGAGGAGAGAGTAGATGAGGTTCTGAATGTGTTTCTAAAAGACTTCAAAGAAGATATGCTAGAAACCAAAGGCTGGCCACTTTCACTTTCTGCTTATATACTCTCCAAAGCTTCCTTGAATGCATACACTAGAATTCTGGCCAAGAAGTACAAAAATTTCTGTGTCAATTGCGTCTGCCCTGGATTTGTCAAAACAGATATGACCTTCAATGCAGGCATCTTAACCACTGATGAAGCTGCTGAAAATGTTACCAGGCTAGCTGTGTTTCCAAATGGCAATCCCTCCGGTATCTTCTTCTTTCAACAAGAAGCATCATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

265

Amino Acids

29.08

Weight (kDa)

7.59

Isoelectric Point (pI)

18.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 45 - 140 2.2e-06 short chain dehydrogenase
adh_short_C2 PF13561 186 - 245 1e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 546
AcoI YGGCCR 2 cut(s) 548, 612
AcsI RAATTY 2 cut(s) 606, 628
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 623
AfiI CCNNNNNNNGG 1 cut(s) 546
AgsI TTSAA 4 cut(s) 520, 592, 682, 776
AjnI CCWGG 2 cut(s) 652, 725
AleI CACNNNNGTG 1 cut(s) 264
AluBI AGCT 9 cut(s) 83, 212, 221, 227, 367, 421, 584, 710, 734
AluI AGCT 9 cut(s) 83, 212, 221, 227, 367, 421, 584, 710, 734
AoxI GGCC 3 cut(s) 438, 548, 612
ApeKI GCWGC 5 cut(s) 179, 221, 224, 227, 710
ApoI RAATTY 2 cut(s) 606, 628
AspLEI GCGC 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 438
AsuHPI GGTGA 3 cut(s) 181, 369, 467
AsuII TTCGAA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 730
BalI TGGCCA 2 cut(s) 550, 614
BanI GGYRCC 1 cut(s) 326
BbvI GCAGC 5 cut(s) 191, 208, 214, 236, 697
BciT130I CCWGG 2 cut(s) 654, 727
BfaI CTAG 5 cut(s) 80, 114, 533, 603, 731
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 5 cut(s) 180, 222, 225, 228, 711
BlsI GCNGC 5 cut(s) 181, 223, 226, 229, 712
Bme1390I CCNGG 2 cut(s) 654, 727
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 2 cut(s) 654, 727
BmsI GCATC 3 cut(s) 448, 699, 794
BmtI GCTAGC 1 cut(s) 734
BpmI CTGGAG 1 cut(s) 283
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 652
BsaWI WCCGGW 1 cut(s) 758
Bsc4I CCNNNNNNNGG 1 cut(s) 546
Bse1I ACTGG 2 cut(s) 162, 266
BseBI CCWGG 2 cut(s) 654, 727
BseDI CCNNGG 1 cut(s) 652
BseGI GGATG 1 cut(s) 788
BseLI CCNNNNNNNGG 1 cut(s) 546
BseMII CTCAG 2 cut(s) 293, 453
BseNI ACTGG 2 cut(s) 162, 266
BseRI GAGGAG 1 cut(s) 491
BseXI GCAGC 5 cut(s) 191, 208, 214, 236, 697
BshFI GGCC 3 cut(s) 440, 550, 614
BshNI GGYRCC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 759
BslI CCNNNNNNNGG 1 cut(s) 546
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 3 cut(s) 440, 550, 614
Bsp119I TTCGAA 1 cut(s) 44
BspANI GGCC 3 cut(s) 440, 550, 614
BspCNI CTCAG 2 cut(s) 292, 454
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 328
BspMAI CTGCAG 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 734
BspT104I TTCGAA 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 326
BsrI ACTGG 2 cut(s) 162, 266
BssECI CCNNGG 1 cut(s) 652
BssNI GRCGYC 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 654, 727
Bst4CI ACNGT 2 cut(s) 13, 103
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 255
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 548, 688, 732
BstDEI CTNAG 2 cut(s) 279, 462
BstF5I GGATG 1 cut(s) 788
BstHHI GCGC 1 cut(s) 407
BstMWI GCNNNNNNNGC 2 cut(s) 218, 227
BstNI CCWGG 2 cut(s) 654, 727
BstSCI CCNGG 2 cut(s) 652, 725
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 5 cut(s) 191, 208, 214, 236, 697
BsuRI GGCC 3 cut(s) 440, 550, 614
BtsCI GGATG 1 cut(s) 788
BtsIMutI CAGTG 3 cut(s) 18, 259, 699
Cac8I GCNNGC 3 cut(s) 548, 688, 732
CciI TCATGA 1 cut(s) 96
CfoI GCGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 438
CseI GACGC 1 cut(s) 634
Csp6I GTAC 1 cut(s) 622
CviAII CATG 1 cut(s) 97
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 2 cut(s) 279, 462
EaeI YGGCCR 2 cut(s) 548, 612
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 652, 725
EcoRV GATATC 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 598
FaeI CATG 1 cut(s) 100
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 5 cut(s) 180, 222, 225, 228, 711
FokI GGATG 1 cut(s) 775
Fsp4HI GCNGC 5 cut(s) 180, 222, 225, 228, 711
FspBI CTAG 5 cut(s) 80, 114, 533, 603, 731
GlaI GCGC 1 cut(s) 406
GluI GCNGC 5 cut(s) 180, 222, 225, 228, 711
GsuI CTGGAG 1 cut(s) 283
HaeIII GGCC 3 cut(s) 440, 550, 614
HapII CCGG 1 cut(s) 759
HgaI GACGC 1 cut(s) 634
HhaI GCGC 1 cut(s) 407
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HindIII AAGCTT 3 cut(s) 210, 419, 582
HinfI GANTC 2 cut(s) 192, 374
HpaII CCGG 1 cut(s) 759
HphI GGTGA 3 cut(s) 181, 369, 467
Hpy166II GTNNAC 3 cut(s) 172, 253, 259
Hpy188I TCNGA 3 cut(s) 282, 373, 498
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 3 cut(s) 172, 253, 259
HpyAV CCTTC 4 cut(s) 15, 121, 239, 688
HpyCH4III ACNGT 2 cut(s) 13, 103
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 7 cut(s) 29, 179, 224, 230, 275, 596, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 227
HpyF3I CTNAG 2 cut(s) 279, 462
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 1 cut(s) 405
Lsp1109I GCAGC 5 cut(s) 191, 208, 214, 236, 697
LweI GCATC 3 cut(s) 448, 699, 794
MaeI CTAG 5 cut(s) 80, 114, 533, 603, 731
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 34, 721
MboII GAAGA 5 cut(s) 28, 136, 536, 757, 760
MfeI CAATTG 1 cut(s) 640
MlsI TGGCCA 2 cut(s) 550, 614
MluCI AATT 4 cut(s) 336, 606, 628, 640
MluNI TGGCCA 2 cut(s) 550, 614
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 5 cut(s) 366, 405, 469, 484, 766
Mox20I TGGCCA 2 cut(s) 550, 614
Mph1103I ATGCAT 1 cut(s) 598
MscI TGGCCA 2 cut(s) 550, 614
MseI TTAA 3 cut(s) 107, 416, 695
MslI CAYNNNNRTG 1 cut(s) 264
Msp20I TGGCCA 2 cut(s) 550, 614
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 759
MspR9I CCNGG 2 cut(s) 654, 727
MunI CAATTG 1 cut(s) 640
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 2 cut(s) 654, 727
MwoI GCNNNNNNNGC 2 cut(s) 218, 227
NheI GCTAGC 1 cut(s) 730
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 598
NspV TTCGAA 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 264
PagI TCATGA 1 cut(s) 96
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 546
PkrI GCNGC 5 cut(s) 181, 223, 226, 229, 712
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 652, 725
PspGI CCWGG 2 cut(s) 652, 725
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 438
PsrI GAACNNNNNNTAC 2 cut(s) 477, 509
PstI CTGCAG 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 3 cut(s) 107, 416, 695
SatI GCNGC 5 cut(s) 180, 222, 225, 228, 711
Sau96I GGNCC 1 cut(s) 438
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 654, 727
SfaNI GCATC 3 cut(s) 448, 699, 794
SfcI CTRYAG 1 cut(s) 222
SfuI TTCGAA 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 4 cut(s) 336, 606, 628, 640
SspI AATATT 1 cut(s) 394
SspMI CTAG 5 cut(s) 80, 114, 533, 603, 731
StyD4I CCNGG 2 cut(s) 652, 725
TaaI ACNGT 2 cut(s) 13, 103
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 44
TasI AATT 4 cut(s) 336, 606, 628, 640
TatI WGTACW 1 cut(s) 621
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 3 cut(s) 107, 416, 695
Tru9I TTAA 3 cut(s) 107, 416, 695
TscAI CASTG 3 cut(s) 18, 266, 706
TseI GCWGC 5 cut(s) 179, 221, 224, 227, 710
TspDTI ATGAA 2 cut(s) 205, 720
TspRI CASTG 3 cut(s) 18, 266, 706
Van91I CCANNNNNTGG 1 cut(s) 546
XapI RAATTY 2 cut(s) 606, 628
XspI CTAG 5 cut(s) 80, 114, 533, 603, 731
ZraI GACGTC 1 cut(s) 256
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.