Rmu_co8305447.1_g000001

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8305447.1
OG0000170
Physical Location & Seq
Reverse (-)
2 .. 906
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8305447.1_g000001.1.cds

Sequence Viewer

Length: 643 bp
gtatgcagttgttacaggatcaaacaaaggaattggattcgaaactgtgaggcagttggtcttaaatggaatcactgtggtcttaactgctagagatgagaagaggggacttgaagctgttgagaaactgaaaaagtctggcctctcaggccaagtgattttccaccaacttgatgtggctgaccctgctagtattgctgctttggcacaattcatcaaaacccagttcgggaagctcgatatcttggtgaacaatgcagggattggtggatccataattgatgctgatggtgctaaagatgcagttgcagctggaggacaaattgattggcaaaaactggtgacagaaacttatgaattaacagaagaatgcttgcaaatcaattattatggagctaaaagaacatccgaagcacttattccactccttgagctatctgattcaccaagaattgttaatgtttcatcctctatgggaaagttaaagaacatgccaagtgatagggtaaaagaaatttttactgatgtagagaacctgagggaagagagtgtagatgaagtattgacagagtttcttaaggactacaaggagggttcacttgaaagcaagggctggccttcttctatgtcaggctatacagtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

214

Amino Acids

23.23

Weight (kDa)

4.84

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 26, 265, 278
AcsI RAATTY 1 cut(s) 514
AfiI CCNNNNNNNGG 1 cut(s) 229
AflII CTTAAG 1 cut(s) 576
AgsI TTSAA 2 cut(s) 114, 603
AluBI AGCT 5 cut(s) 117, 236, 312, 396, 434
AluI AGCT 5 cut(s) 117, 236, 312, 396, 434
AlwI GGATC 3 cut(s) 26, 265, 278
AoxI GGCC 3 cut(s) 140, 149, 615
ApeKI GCWGC 2 cut(s) 198, 309
ApoI RAATTY 1 cut(s) 514
AsuHPI GGTGA 3 cut(s) 260, 353, 436
AsuII TTCGAA 1 cut(s) 40
AxyI CCTNAGG 1 cut(s) 537
BamHI GGATCC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 185, 321
BccI CCATC 1 cut(s) 282
BfaI CTAG 2 cut(s) 91, 190
BfrI CTTAAG 1 cut(s) 576
BglI GCCNNNNNGGC 1 cut(s) 148
BisI GCNGC 2 cut(s) 199, 310
BlsI GCNGC 2 cut(s) 200, 311
BmiI GGNNCC 1 cut(s) 272
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 272, 290
BmuI ACTGGG 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 450
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 224, 343
Bse21I CCTNAGG 1 cut(s) 537
BseGI GGATG 2 cut(s) 405, 465
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 160, 528
BseNI ACTGG 2 cut(s) 224, 343
BseXI GCAGC 2 cut(s) 185, 321
BshFI GGCC 3 cut(s) 142, 151, 617
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 3 cut(s) 142, 151, 617
Bsp119I TTCGAA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 18, 270
BspANI GGCC 3 cut(s) 142, 151, 617
BspCNI CTCAG 2 cut(s) 159, 529
BspLI GGNNCC 1 cut(s) 272
BspPI GGATC 3 cut(s) 26, 265, 278
BspT104I TTCGAA 1 cut(s) 40
BspTI CTTAAG 1 cut(s) 576
BsrI ACTGG 2 cut(s) 224, 343
BssMI GATC 2 cut(s) 18, 270
Bst4CI ACNGT 3 cut(s) 47, 77, 641
Bst6I CTCTTC 2 cut(s) 96, 538
BstAFI CTTAAG 1 cut(s) 576
BstBI TTCGAA 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 375, 615
BstDEI CTNAG 2 cut(s) 146, 537
BstF5I GGATG 2 cut(s) 405, 465
BstKTI GATC 2 cut(s) 21, 273
BstMBI GATC 2 cut(s) 18, 270
BstMWI GCNNNNNNNGC 7 cut(s) 148, 186, 195, 204, 291, 300, 309
BstNSI RCATGY 1 cut(s) 494
BstV1I GCAGC 2 cut(s) 185, 321
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 3 cut(s) 142, 151, 617
BtsCI GGATG 2 cut(s) 405, 465
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 375, 615
CviAII CATG 1 cut(s) 491
DdeI CTNAG 2 cut(s) 146, 537
DpnI GATC 2 cut(s) 20, 272
DpnII GATC 2 cut(s) 18, 270
Eam1104I CTCTTC 2 cut(s) 96, 538
EarI CTCTTC 2 cut(s) 96, 538
Eco32I GATATC 1 cut(s) 242
Eco81I CCTNAGG 1 cut(s) 537
EcoRV GATATC 1 cut(s) 242
FaeI CATG 1 cut(s) 494
FaiI YATR 8 cut(s) 4, 276, 355, 391, 474, 492, 627, 637
FaqI GGGAC 1 cut(s) 121
FatI CATG 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 199, 310
FokI GGATG 2 cut(s) 392, 452
Fsp4HI GCNGC 2 cut(s) 199, 310
FspBI CTAG 2 cut(s) 91, 190
GluI GCNGC 2 cut(s) 199, 310
GsuI CTGGAG 1 cut(s) 334
HaeIII GGCC 3 cut(s) 142, 151, 617
Hin1II CATG 1 cut(s) 494
HinfI GANTC 3 cut(s) 37, 70, 441
HphI GGTGA 3 cut(s) 260, 353, 436
Hpy166II GTNNAC 2 cut(s) 251, 597
Hpy188I TCNGA 2 cut(s) 410, 440
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 251, 597
HpyAV CCTTC 1 cut(s) 628
HpyCH4III ACNGT 3 cut(s) 47, 77, 641
HpyCH4V TGCA 5 cut(s) 6, 258, 303, 309, 377
HpyF10VI GCNNNNNNNGC 7 cut(s) 148, 186, 195, 204, 291, 300, 309
HpyF3I CTNAG 2 cut(s) 146, 537
Hsp92II CATG 1 cut(s) 494
Kzo9I GATC 2 cut(s) 18, 270
LmnI GCTCC 1 cut(s) 393
Lsp1109I GCAGC 2 cut(s) 185, 321
LweI GCATC 2 cut(s) 272, 290
MaeI CTAG 2 cut(s) 91, 190
MaeIII GTNAC 2 cut(s) 11, 341
MalI GATC 2 cut(s) 20, 272
MboI GATC 2 cut(s) 18, 270
MboII GAAGA 4 cut(s) 113, 378, 555, 613
MflI RGATCY 1 cut(s) 270
MluCI AATT 8 cut(s) 31, 210, 277, 322, 357, 383, 451, 514
MnlI CCTC 7 cut(s) 43, 97, 153, 309, 479, 532, 584
MseI TTAA 6 cut(s) 63, 84, 360, 457, 483, 577
MspA1I CMGCKG 1 cut(s) 312
MspCI CTTAAG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 375
MwoI GCNNNNNNNGC 7 cut(s) 148, 186, 195, 204, 291, 300, 309
NdeII GATC 2 cut(s) 18, 270
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 494
NspV TTCGAA 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PctI GAATGC 1 cut(s) 375
PfeI GAWTC 3 cut(s) 37, 70, 441
PkrI GCNGC 2 cut(s) 200, 311
PspN4I GGNNCC 1 cut(s) 272
PsuI RGATCY 1 cut(s) 270
PvuII CAGCTG 1 cut(s) 312
SaqAI TTAA 6 cut(s) 63, 84, 360, 457, 483, 577
SatI GCNGC 2 cut(s) 199, 310
Sau3AI GATC 2 cut(s) 18, 270
SetI ASST 6 cut(s) 119, 238, 314, 398, 436, 538
SfaNI GCATC 2 cut(s) 272, 290
SfiI GGCCNNNNNGGCC 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 40
SmlI CTYRAG 2 cut(s) 429, 576
SmoI CTYRAG 2 cut(s) 429, 576
Sse9I AATT 8 cut(s) 31, 210, 277, 322, 357, 383, 451, 514
SspMI CTAG 2 cut(s) 91, 190
TaaI ACNGT 3 cut(s) 47, 77, 641
TaqI TCGA 2 cut(s) 40, 238
TasI AATT 8 cut(s) 31, 210, 277, 322, 357, 383, 451, 514
TfiI GAWTC 3 cut(s) 37, 70, 441
Tru1I TTAA 6 cut(s) 63, 84, 360, 457, 483, 577
Tru9I TTAA 6 cut(s) 63, 84, 360, 457, 483, 577
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 198, 309
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 4 cut(s) 203, 370, 454, 571
TspRI CASTG 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 576
XapI RAATTY 1 cut(s) 514
XceI RCATGY 1 cut(s) 494
XspI CTAG 2 cut(s) 91, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.