Prupe.4G240700_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000170
Physical Location & Seq
Reverse (-)
15841445 .. 15843436
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G240700.1

Sequence Viewer

Length: 894 bp
ATGGCAGAAACAACAAAGAGGTATGCAGTTGTCACAGGGGCTAATAAAGGGGTTGGATTTGGCACGGTTAAGCAGTTGGCTTCAAATGGGGTCACTGTGGTGTTAACTGCTAGAGATGAGAAGAGGGGTCTTGAAGCTGTTGATAAATTGAAAGAGTTTGGCCTCTCTGACCTTGTGGTTTTCCATCAGCTTGATGTTACAGATCCTTCTAGCATTACTTCCTTGGCAGATTTTGTCAAAACCCAATTTGGGAAACTTGATATCTTGGTAAACAATGCAGCAATTGCTGGAAGCCAAGTAAATCCTGAAGATTTTAGATCAGCTGTGAGTGGTAAGAAGCCTGAAGAAATCCGGTGGAGGGAAATACCGACGATACCGAACTACAAGTTAGCAGAAGAAAGCCTGAAAACAAACTACTATGGTACCAAAGGAGTGACTGAAGCACTTTTACCCCTCCTCCAGCTATCTGATTCACCAAGAATCGTTAATGTTTCTTCTGGTGTTTCTAAGCTTATGAATTTTCCAAATGGATGGGCTAAAGAGGTACTAAGTGATGCCGAGAGCCTTACGGAAGAGAGAATAGATGCAGTGTTGGCTGAGCATTTAGAAGACCTTAAACAAGGTTTGGTAGAAAACAAAAGCTGGCCAACTATCTTCCCGCCATATACAGTCTCAAAAGCAGCTGTGAATGCGTACACTAGAATTCTGGCCAAGAAGTACACAAACTTCTACATCAATTGTGTGAACCCTGGATTTGTCAACACAGATATAACCTTCAATACTGGAACCTTAACCATCGAAGAAGGTGCTGAAAGTCTTGTCTGGTTGGCGCTGCTCCCCAATGGCGGTCCTACTGGCCACTTCTTTTCTCGCAAAGAAGCGACACCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

298

Amino Acids

32.49

Weight (kDa)

5.58

Isoelectric Point (pI)

29.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 422
AciI CCGC 2 cut(s) 659, 846
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 3 cut(s) 644, 708, 856
AcsI RAATTY 2 cut(s) 517, 702
AcuI CTGAAG 3 cut(s) 327, 363, 459
AfaI GTAC 4 cut(s) 424, 546, 695, 719
AfiI CCNNNNNNNGG 3 cut(s) 249, 358, 845
AgsI TTSAA 4 cut(s) 84, 134, 151, 778
AjnI CCWGG 1 cut(s) 748
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 7 cut(s) 137, 190, 323, 463, 511, 642, 683
AluI AGCT 7 cut(s) 137, 190, 323, 463, 511, 642, 683
Alw26I GTCTC 1 cut(s) 676
AlwI GGATC 1 cut(s) 197
AoxI GGCC 4 cut(s) 160, 644, 708, 856
ApeKI GCWGC 3 cut(s) 278, 680, 832
ApoI RAATTY 2 cut(s) 517, 702
Asp718I GGTACC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 832
AspS9I GGNCC 1 cut(s) 848
AsuHPI GGTGA 1 cut(s) 465
AvaII GGWCC 1 cut(s) 848
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BalI TGGCCA 3 cut(s) 646, 710, 858
BanI GGYRCC 1 cut(s) 422
BarI GAAGNNNNNNTAC 4 cut(s) 432, 464, 710, 742
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 290, 692, 819
BccI CCATC 3 cut(s) 192, 525, 803
BcgI CGANNNNNNTGC 2 cut(s) 788, 822
BciT130I CCWGG 1 cut(s) 750
BcoDI GTCTC 1 cut(s) 676
BfaI CTAG 3 cut(s) 111, 210, 699
BfoI RGCGCY 1 cut(s) 833
BisI GCNGC 3 cut(s) 279, 681, 833
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 3 cut(s) 280, 682, 834
Bme1390I CCNGG 1 cut(s) 750
Bme18I GGWCC 1 cut(s) 848
BmgT120I GGNCC 1 cut(s) 848
BmiI GGNNCC 2 cut(s) 424, 787
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 2 cut(s) 544, 574
BpiI GAAGAC 1 cut(s) 615
BpmI CTGGAG 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 597
BsaJI CCNNGG 2 cut(s) 222, 748
BsaWI WCCGGW 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 358, 845
Bse1I ACTGG 2 cut(s) 787, 859
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 2 cut(s) 222, 748
BseGI GGATG 1 cut(s) 536
BseLI CCNNNNNNNGG 3 cut(s) 249, 358, 845
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 2 cut(s) 787, 859
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 3 cut(s) 290, 692, 819
BshFI GGCC 4 cut(s) 162, 646, 710, 858
BshNI GGYRCC 1 cut(s) 422
BsiSI CCGG 1 cut(s) 352
BslI CCNNNNNNNGG 3 cut(s) 249, 358, 845
BsmAI GTCTC 1 cut(s) 676
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 4 cut(s) 162, 646, 710, 858
Bsp143I GATC 2 cut(s) 202, 317
Bsp1720I GCTNAGC 1 cut(s) 597
BspACI CCGC 2 cut(s) 659, 846
BspANI GGCC 4 cut(s) 162, 646, 710, 858
BspCNI CTCAG 1 cut(s) 589
BspLI GGNNCC 2 cut(s) 424, 787
BspPI GGATC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 422
BsrI ACTGG 2 cut(s) 787, 859
BssECI CCNNGG 2 cut(s) 222, 748
BssMI GATC 2 cut(s) 202, 317
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 3 cut(s) 67, 97, 670
Bst6I CTCTTC 2 cut(s) 116, 567
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 644
BstDEI CTNAG 3 cut(s) 507, 548, 597
BstF5I GGATG 1 cut(s) 536
BstH2I RGCGCY 1 cut(s) 833
BstHHI GCGC 1 cut(s) 832
BstKTI GATC 2 cut(s) 205, 320
BstMAI GTCTC 1 cut(s) 676
BstMBI GATC 2 cut(s) 202, 317
BstMWI GCNNNNNNNGC 3 cut(s) 284, 593, 689
BstNI CCWGG 1 cut(s) 750
BstSCI CCNGG 1 cut(s) 748
BstV1I GCAGC 3 cut(s) 290, 692, 819
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 531
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 4 cut(s) 162, 646, 710, 858
BtsCI GGATG 1 cut(s) 536
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 93, 594
Cac8I GCNNGC 1 cut(s) 644
CfoI GCGC 1 cut(s) 832
Cfr13I GGNCC 1 cut(s) 848
Csp6I GTAC 4 cut(s) 423, 545, 694, 718
CviQI GTAC 4 cut(s) 423, 545, 694, 718
DdeI CTNAG 3 cut(s) 507, 548, 597
DpnI GATC 2 cut(s) 204, 319
DpnII GATC 2 cut(s) 202, 317
EaeI YGGCCR 3 cut(s) 644, 708, 856
Eam1104I CTCTTC 2 cut(s) 116, 567
EarI CTCTTC 2 cut(s) 116, 567
Eco130I CCWWGG 1 cut(s) 222
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 848
Eco57I CTGAAG 3 cut(s) 327, 363, 459
EcoRI GAATTC 1 cut(s) 702
EcoRII CCWGG 1 cut(s) 748
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaiI YATR 6 cut(s) 24, 420, 515, 664, 666, 770
FauI CCCGC 1 cut(s) 666
Fnu4HI GCNGC 3 cut(s) 279, 681, 833
FokI GGATG 1 cut(s) 543
Fsp4HI GCNGC 3 cut(s) 279, 681, 833
FspBI CTAG 3 cut(s) 111, 210, 699
GlaI GCGC 1 cut(s) 831
GluI GCNGC 3 cut(s) 279, 681, 833
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 833
HaeIII GGCC 4 cut(s) 162, 646, 710, 858
HapII CCGG 1 cut(s) 352
HhaI GCGC 1 cut(s) 832
Hin6I GCGC 1 cut(s) 830
HinP1I GCGC 1 cut(s) 830
HincII GTYRAC 2 cut(s) 105, 760
HindII GTYRAC 2 cut(s) 105, 760
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 2 cut(s) 470, 480
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 352
HphI GGTGA 1 cut(s) 465
Hpy166II GTNNAC 6 cut(s) 105, 271, 696, 720, 745, 760
Hpy188I TCNGA 2 cut(s) 169, 469
Hpy188III TCNNGA 2 cut(s) 131, 305
Hpy8I GTNNAC 6 cut(s) 105, 271, 696, 720, 745, 760
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 3 cut(s) 216, 784, 797
HpyCH4III ACNGT 3 cut(s) 67, 97, 670
HpyCH4V TGCA 3 cut(s) 26, 278, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 593, 689
HpyF3I CTNAG 3 cut(s) 507, 548, 597
HspAI GCGC 1 cut(s) 830
KpnI GGTACC 1 cut(s) 426
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 202, 317
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 3 cut(s) 290, 692, 819
LweI GCATC 2 cut(s) 544, 574
MaeI CTAG 3 cut(s) 111, 210, 699
MaeIII GTNAC 4 cut(s) 31, 91, 196, 433
MalI GATC 2 cut(s) 204, 319
MboI GATC 2 cut(s) 202, 317
MboII GAAGA 9 cut(s) 133, 320, 356, 407, 486, 584, 620, 646, 812
MfeI CAATTG 2 cut(s) 282, 736
MflI RGATCY 1 cut(s) 202
MlsI TGGCCA 3 cut(s) 646, 710, 858
MluCI AATT 6 cut(s) 146, 245, 282, 517, 702, 736
MluNI TGGCCA 3 cut(s) 646, 710, 858
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 7 cut(s) 12, 117, 173, 351, 464, 467, 535
Mox20I TGGCCA 3 cut(s) 646, 710, 858
MscI TGGCCA 3 cut(s) 646, 710, 858
MseI TTAA 5 cut(s) 69, 104, 486, 615, 791
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 3 cut(s) 646, 710, 858
MspA1I CMGCKG 2 cut(s) 323, 683
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 750
MunI CAATTG 2 cut(s) 282, 736
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 3 cut(s) 284, 593, 689
NdeII GATC 2 cut(s) 202, 317
NlaIV GGNNCC 2 cut(s) 424, 787
NmeAIII GCCGAG 1 cut(s) 583
NmuCI GTSAC 3 cut(s) 31, 91, 433
OliI CACNNNNGTG 1 cut(s) 98
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 2 cut(s) 470, 480
PkrI GCNGC 3 cut(s) 280, 682, 834
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 2 cut(s) 424, 787
PspPI GGNCC 1 cut(s) 848
PsuI RGATCY 1 cut(s) 202
PvuII CAGCTG 2 cut(s) 323, 683
RsaI GTAC 4 cut(s) 424, 546, 695, 719
RsaNI GTAC 4 cut(s) 423, 545, 694, 718
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 5 cut(s) 69, 104, 486, 615, 791
SatI GCNGC 3 cut(s) 279, 681, 833
Sau3AI GATC 2 cut(s) 202, 317
Sau96I GGNCC 1 cut(s) 848
ScrFI CCNGG 1 cut(s) 750
SfaNI GCATC 2 cut(s) 544, 574
SinI GGWCC 1 cut(s) 848
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 6 cut(s) 146, 245, 282, 517, 702, 736
SsiI CCGC 2 cut(s) 659, 846
SspMI CTAG 3 cut(s) 111, 210, 699
StyD4I CCNGG 1 cut(s) 748
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 3 cut(s) 67, 97, 670
TaqI TCGA 1 cut(s) 798
TasI AATT 6 cut(s) 146, 245, 282, 517, 702, 736
TatI WGTACW 1 cut(s) 717
TfiI GAWTC 2 cut(s) 470, 480
Tru1I TTAA 5 cut(s) 69, 104, 486, 615, 791
Tru9I TTAA 5 cut(s) 69, 104, 486, 615, 791
TscAI CASTG 2 cut(s) 100, 594
TseFI GTSAC 3 cut(s) 31, 91, 433
TseI GCWGC 3 cut(s) 278, 680, 832
Tsp45I GTSAC 3 cut(s) 31, 91, 433
TspDTI ATGAA 1 cut(s) 530
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 2 cut(s) 100, 594
VpaK11BI GGWCC 1 cut(s) 848
XapI RAATTY 2 cut(s) 517, 702
XspI CTAG 3 cut(s) 111, 210, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.