FvH4_7g13620

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000170
Physical Location & Seq
Forward (+)
12188559 .. 12189751
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13620.t1

Sequence Viewer

Length: 807 bp
ATGGCAACCAGCGTAGAAGCAACCAAGAGGTATGCAGTTGTCACAGGATCAAATAAAGGAATCGGATTCGAAACTGTAAGGCAGTTGGCCTCAAATGGAATTACTGTGGTGTTAACTGCTAGAGATGAGAAGAGGGGCCTTGAAGCTGTTGAGAAATTGAAAGAGTCTGGTCTTTCAGGCCAAGTGGTTTTTCACCAACTTAATGTGGCTGACCCTGCTAGCATTGCTTCTTTAGCGCTATTCATCAAGTCCCAGTTTGGGAAGCTCGATATCTTGGTGAACAATGCAGGTATTGGTGGATCAATAATTGATGATGATGGTGCTAAAGCTGCAGTTGCAGCTGGAAGACAACTTGATTGGCAAAAACTGGTGACAGAAACTAATGAGTTAACAGAAAAAATTGTTAATGTTTCATCGTCTGTGGGGAAGTTAAAATACATACCAAGTGATAGAGTTAAAAGAATTTTCACTGATGTCGAGAACCTAAAAGAAGAGAGTATTGATGAAGTATTGACAGAGTTGGACTACAAGGAGGGTTCACTTGAAAGTAAGGACTGGCCTTCTTCTATGTCAGGCTATACACTTGCAAAAGCATCACTGAATGCATATACAAGGATTCTAGCCAAGAAATACCCCAGTTTTCTGGTCAACTGTCTCTGCCCCGGCTATGTCAAAACAGATTTTAACCTCAATGCTGGTGCTGTGCCTGTTGAAGAAGGTGCTGCGAATTCTGTGCGGTTGGCGCTGCTTCCCACTGATGGCCCTTCTGGCCAATTCTTTGTTCGATCTGAAGTTAGCATTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

269

Amino Acids

28.86

Weight (kDa)

5.45

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 142 5.6e-21 short chain dehydrogenase
adh_short_C2 PF13561 18 - 103 1e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AciI CCGC 1 cut(s) 736
AclWI GGATC 2 cut(s) 55, 307
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 2 cut(s) 462, 727
AfeI AGCGCT 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 258, 758
AgsI TTSAA 4 cut(s) 143, 160, 545, 713
AjuI GAANNNNNNNTTGG 4 cut(s) 174, 206, 765, 797
AluBI AGCT 4 cut(s) 146, 265, 329, 341
AluI AGCT 4 cut(s) 146, 265, 329, 341
Alw26I GTCTC 1 cut(s) 659
AlwI GGATC 2 cut(s) 55, 307
Aor51HI AGCGCT 1 cut(s) 237
AoxI GGCC 6 cut(s) 87, 136, 178, 557, 760, 769
ApeKI GCWGC 4 cut(s) 329, 338, 722, 745
ApoI RAATTY 2 cut(s) 462, 727
AspLEI GCGC 2 cut(s) 238, 745
AspS9I GGNCC 2 cut(s) 136, 761
AsuC2I CCSGG 1 cut(s) 663
AsuHPI GGTGA 3 cut(s) 185, 289, 382
AsuII TTCGAA 1 cut(s) 69
AsuNHI GCTAGC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 771
BarI GAAGNNNNNNTAC 2 cut(s) 419, 451
BbsI GAAGAC 1 cut(s) 352
BbvI GCAGC 4 cut(s) 316, 350, 709, 732
BccI CCATC 2 cut(s) 311, 752
BcgI CGANNNNNNTGC 2 cut(s) 715, 749
BcnI CCSGG 1 cut(s) 663
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 3 cut(s) 120, 219, 620
BfmI CTRYAG 1 cut(s) 330
BfoI RGCGCY 2 cut(s) 239, 746
BfuAI ACCTGC 1 cut(s) 278
BglI GCCNNNNNGGC 1 cut(s) 768
BisI GCNGC 4 cut(s) 330, 339, 723, 746
BlsI GCNGC 4 cut(s) 331, 340, 724, 747
Bme1390I CCNGG 1 cut(s) 663
BmgT120I GGNCC 2 cut(s) 136, 761
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 663
BmrI ACTGGG 2 cut(s) 247, 630
BmsI GCATC 1 cut(s) 602
BmtI GCTAGC 1 cut(s) 222
BmuI ACTGGG 2 cut(s) 247, 630
BpiI GAAGAC 1 cut(s) 352
Bpu14I TTCGAA 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 663
BsaJI CCNNGG 1 cut(s) 661
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 758
Bse1I ACTGG 4 cut(s) 253, 372, 560, 636
Bse3DI GCAATG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 661
BseLI CCNNNNNNNGG 2 cut(s) 258, 758
BseMI GCAATG 1 cut(s) 222
BseNI ACTGG 4 cut(s) 253, 372, 560, 636
BseXI GCAGC 4 cut(s) 316, 350, 709, 732
BshFI GGCC 6 cut(s) 89, 138, 180, 559, 762, 771
BsiSI CCGG 1 cut(s) 663
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 258, 758
BsmAI GTCTC 1 cut(s) 659
BsmFI GGGAC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 6 cut(s) 89, 138, 180, 559, 762, 771
Bsp119I TTCGAA 1 cut(s) 69
Bsp143I GATC 3 cut(s) 47, 299, 785
BspACI CCGC 1 cut(s) 736
BspANI GGCC 6 cut(s) 89, 138, 180, 559, 762, 771
BspLI GGNNCC 1 cut(s) 137
BspMAI CTGCAG 1 cut(s) 334
BspMI ACCTGC 1 cut(s) 278
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 2 cut(s) 55, 307
BspT104I TTCGAA 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 4 cut(s) 253, 372, 560, 636
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 3 cut(s) 47, 299, 785
Bst4CI ACNGT 3 cut(s) 76, 106, 653
Bst6I CTCTTC 2 cut(s) 125, 486
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 220
BstH2I RGCGCY 2 cut(s) 239, 746
BstHHI GCGC 2 cut(s) 238, 745
BstKTI GATC 3 cut(s) 50, 302, 788
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 3 cut(s) 47, 299, 785
BstMWI GCNNNNNNNGC 8 cut(s) 215, 224, 233, 329, 335, 338, 742, 768
BstSCI CCNGG 1 cut(s) 661
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 4 cut(s) 316, 350, 709, 732
BstV2I GAAGAC 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 643
BsuRI GGCC 6 cut(s) 89, 138, 180, 559, 762, 771
BtsIMutI CAGTG 3 cut(s) 468, 596, 753
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 2 cut(s) 238, 745
Cfr13I GGNCC 2 cut(s) 136, 761
DpnI GATC 3 cut(s) 49, 301, 787
DpnII GATC 3 cut(s) 47, 299, 785
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 2 cut(s) 125, 486
EarI CTCTTC 2 cut(s) 125, 486
Eco32I GATATC 1 cut(s) 271
Eco47III AGCGCT 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 727
EcoRV GATATC 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 607
FaiI YATR 7 cut(s) 33, 440, 569, 579, 607, 609, 669
FaqI GGGAC 1 cut(s) 235
Fnu4HI GCNGC 4 cut(s) 330, 339, 723, 746
Fsp4HI GCNGC 4 cut(s) 330, 339, 723, 746
FspBI CTAG 3 cut(s) 120, 219, 620
GlaI GCGC 2 cut(s) 237, 744
GluI GCNGC 4 cut(s) 330, 339, 723, 746
HaeII RGCGCY 2 cut(s) 239, 746
HaeIII GGCC 6 cut(s) 89, 138, 180, 559, 762, 771
HapII CCGG 1 cut(s) 663
HhaI GCGC 2 cut(s) 238, 745
Hin6I GCGC 2 cut(s) 236, 743
HinP1I GCGC 2 cut(s) 236, 743
HincII GTYRAC 3 cut(s) 114, 390, 649
HindII GTYRAC 3 cut(s) 114, 390, 649
HinfI GANTC 4 cut(s) 60, 66, 164, 616
HpaI GTTAAC 2 cut(s) 114, 390
HpaII CCGG 1 cut(s) 663
HphI GGTGA 3 cut(s) 185, 289, 382
Hpy166II GTNNAC 5 cut(s) 114, 280, 390, 539, 649
Hpy188I TCNGA 2 cut(s) 65, 790
Hpy188III TCNNGA 1 cut(s) 478
Hpy8I GTNNAC 5 cut(s) 114, 280, 390, 539, 649
HpyAV CCTTC 3 cut(s) 570, 710, 774
HpyCH4III ACNGT 3 cut(s) 76, 106, 653
HpyCH4V TGCA 6 cut(s) 35, 287, 332, 338, 587, 605
HpyF10VI GCNNNNNNNGC 8 cut(s) 215, 224, 233, 329, 335, 338, 742, 768
HspAI GCGC 2 cut(s) 236, 743
KspAI GTTAAC 2 cut(s) 114, 390
Kzo9I GATC 3 cut(s) 47, 299, 785
Lsp1109I GCAGC 4 cut(s) 316, 350, 709, 732
LweI GCATC 1 cut(s) 602
MaeI CTAG 3 cut(s) 120, 219, 620
MaeIII GTNAC 2 cut(s) 40, 370
MalI GATC 3 cut(s) 49, 301, 787
MboI GATC 3 cut(s) 47, 299, 785
MboII GAAGA 5 cut(s) 142, 357, 503, 555, 725
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 7 cut(s) 99, 155, 306, 399, 462, 727, 773
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 5 cut(s) 21, 100, 126, 526, 698
Mox20I TGGCCA 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 607
MscI TGGCCA 1 cut(s) 771
MseI TTAA 7 cut(s) 113, 201, 389, 405, 431, 456, 684
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 663
MspR9I CCNGG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 607
MwoI GCNNNNNNNGC 8 cut(s) 215, 224, 233, 329, 335, 338, 742, 768
NciI CCSGG 1 cut(s) 663
NdeII GATC 3 cut(s) 47, 299, 785
NheI GCTAGC 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 137
NmuCI GTSAC 2 cut(s) 40, 370
NsiI ATGCAT 1 cut(s) 607
NspV TTCGAA 1 cut(s) 69
PctI GAATGC 1 cut(s) 607
PfeI GAWTC 3 cut(s) 60, 66, 616
PkrI GCNGC 4 cut(s) 331, 340, 724, 747
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 2 cut(s) 136, 761
PstI CTGCAG 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 341
SaqAI TTAA 7 cut(s) 113, 201, 389, 405, 431, 456, 684
SatI GCNGC 4 cut(s) 330, 339, 723, 746
Sau3AI GATC 3 cut(s) 47, 299, 785
Sau96I GGNCC 2 cut(s) 136, 761
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 663
SetI ASST 9 cut(s) 32, 148, 267, 292, 331, 343, 486, 690, 721
SfaNI GCATC 1 cut(s) 602
SfcI CTRYAG 1 cut(s) 330
SfiI GGCCNNNNNGGCC 1 cut(s) 768
SfuI TTCGAA 1 cut(s) 69
Sse9I AATT 7 cut(s) 99, 155, 306, 399, 462, 727, 773
SsiI CCGC 1 cut(s) 736
SspMI CTAG 3 cut(s) 120, 219, 620
StyD4I CCNGG 1 cut(s) 661
TaaI ACNGT 3 cut(s) 76, 106, 653
TaqI TCGA 4 cut(s) 69, 267, 477, 784
TasI AATT 7 cut(s) 99, 155, 306, 399, 462, 727, 773
TfiI GAWTC 3 cut(s) 60, 66, 616
Tru1I TTAA 7 cut(s) 113, 201, 389, 405, 431, 456, 684
Tru9I TTAA 7 cut(s) 113, 201, 389, 405, 431, 456, 684
TscAI CASTG 3 cut(s) 475, 603, 760
TseFI GTSAC 2 cut(s) 40, 370
TseI GCWGC 4 cut(s) 329, 338, 722, 745
Tsp45I GTSAC 2 cut(s) 40, 370
TspDTI ATGAA 3 cut(s) 232, 402, 519
TspRI CASTG 3 cut(s) 475, 603, 760
XapI RAATTY 2 cut(s) 462, 727
XspI CTAG 3 cut(s) 120, 219, 620
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.