Rh1DG244300

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
45935736 .. 45937222
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG244300.1

Sequence Viewer

Length: 882 bp
ATGGCAGAATCAACTATGAGGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTTGAAACTTTAAGGCAGTTGGCCTCGACTGGAATCACTGCGGTGTTAACTGCAAGAGATGAGAAGAGAGGCCTTGAAGCTGTTGAGAAGCTGAAAGAGTCTGGCCTCTCGGGCCAAGTAGTTTTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTGATTCTCTAGCACAATTCATCAAAACTCAGTTTGGGAAGCTCGATATTTTGGTGAACAATGCTGTAATTTTTGGAGCTACAGCTGATGTTGATGGTTTGAAAGCTGCAATTGCCTCTGGTGCTGAAGCAGGACAGATTGATTTCAAAAAGTTGTTGACTGAAACTTATGATTTAACAGAAGAATGCTTGCAAATCAATTATTATGGTACTAAAAGAACAACTGAAGCCCTGATTCCACTCCTTCAGCTATCTGATTCACCAAGAATCGTTAATGTTTCATCCTCTATGGGGAAATTAGAGAACATACCAAGTGATTGGGTGAAAGGAATTCTCAGTACTGATGTGGAGAACCTAAGCGAAGAGAGTGTAGATGAAGTATTGACAGAGTTTCTAAACAACCTCAAGGAGAGTTTACTTGAAAGCAAGGGCTGGCCTTCTGCGATGTCAGGCTATATACTCTCAAAAGCAGCAATGAATGCATATACGAGGATTCTAGCCAAGAAGTACCCCGGTTTTCGCGTCAACTCTGTCTGCCCTGGCTTTGTCAAAACAGATATAAACTTCAATACTGGTGTCTTGCCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTGATGATGGCCCCACAGGCCAATTCTTTTTTCGGTCTGAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

294

Amino Acids

31.75

Weight (kDa)

4.78

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 172 1.5e-25 short chain dehydrogenase
KR PF08659 10 - 97 4e-06 KR domain
adh_short_C2 PF13561 15 - 170 1.9e-15 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 212 - 259 2.2e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 735
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 543, 826
AcuI CTGAAG 3 cut(s) 360, 443, 459
AfaI GTAC 3 cut(s) 424, 553, 722
AfiI CCNNNNNNNGG 2 cut(s) 504, 848
AgsI TTSAA 7 cut(s) 62, 134, 316, 361, 635, 781, 803
AjnI CCWGG 1 cut(s) 751
AjuI GAANNNNNNNTTGG 3 cut(s) 165, 197, 855
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 7 cut(s) 137, 148, 256, 293, 299, 320, 463
AluI AGCT 7 cut(s) 137, 148, 256, 293, 299, 320, 463
AlwI GGATC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 7 cut(s) 78, 127, 160, 169, 647, 850, 859
ApeKI GCWGC 4 cut(s) 320, 683, 812, 838
ApoI RAATTY 2 cut(s) 543, 826
AspS9I GGNCC 2 cut(s) 169, 851
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 4 cut(s) 176, 280, 465, 547
AvaI CYCGRG 1 cut(s) 166
BbvI GCAGC 4 cut(s) 307, 695, 799, 825
BccI CCATC 2 cut(s) 302, 842
BciT130I CCWGG 1 cut(s) 753
BcnI CCSGG 1 cut(s) 726
BfaI CTAG 3 cut(s) 210, 224, 710
BfmI CTRYAG 1 cut(s) 294
BglI GCCNNNNNGGC 2 cut(s) 168, 858
BisI GCNGC 4 cut(s) 321, 684, 813, 839
BlsI GCNGC 4 cut(s) 322, 685, 814, 840
BmcAI AGTACT 1 cut(s) 553
Bme1390I CCNGG 2 cut(s) 726, 753
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 169, 851
BmiI GGNNCC 1 cut(s) 853
BmrFI CCNGG 2 cut(s) 726, 753
Bpu10I CCTNAGC 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 726
BsaJI CCNNGG 2 cut(s) 724, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 848
Bse1I ACTGG 2 cut(s) 91, 790
Bse3DI GCAATG 2 cut(s) 693, 833
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 2 cut(s) 724, 751
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 504, 848
BseMI GCAATG 2 cut(s) 693, 833
BseMII CTCAG 2 cut(s) 257, 562
BseNI ACTGG 2 cut(s) 91, 790
BseXI GCAGC 4 cut(s) 307, 695, 799, 825
Bsh1236I CGCG 1 cut(s) 735
BshFI GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 726
BslI CCNNNNNNNGG 2 cut(s) 504, 848
BsmI GAATGC 2 cut(s) 404, 697
BsnI GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
BsoBI CYCGRG 1 cut(s) 166
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 1 cut(s) 98
BspANI GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
BspCNI CTCAG 2 cut(s) 256, 561
BspFNI CGCG 1 cut(s) 735
BspLI GGNNCC 1 cut(s) 853
BspPI GGATC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 693, 833
BsrI ACTGG 2 cut(s) 91, 790
BssECI CCNNGG 2 cut(s) 724, 751
BssMI GATC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 753
Bst6I CTCTTC 2 cut(s) 116, 570
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 404, 647
BstDEI CTNAG 3 cut(s) 243, 548, 569
BstF5I GGATG 1 cut(s) 494
BstFNI CGCG 1 cut(s) 735
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 6 cut(s) 168, 206, 326, 335, 692, 858
BstNI CCWGG 1 cut(s) 753
BstSCI CCNGG 2 cut(s) 724, 751
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 1 cut(s) 735
BstV1I GCAGC 4 cut(s) 307, 695, 799, 825
BstXI CCANNNNNNTGG 1 cut(s) 531
BsuRI GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
BtgZI GCGATG 1 cut(s) 671
BtsCI GGATG 1 cut(s) 494
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 404, 647
Cfr13I GGNCC 2 cut(s) 169, 851
CseI GACGC 1 cut(s) 724
Csp6I GTAC 3 cut(s) 423, 552, 721
CviQI GTAC 3 cut(s) 423, 552, 721
DdeI CTNAG 3 cut(s) 243, 548, 569
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 116, 570
EarI CTCTTC 2 cut(s) 116, 570
Eco147I AGGCCT 1 cut(s) 129
Eco57I CTGAAG 3 cut(s) 360, 443, 459
Eco88I CYCGRG 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 751
EcoT22I ATGCAT 1 cut(s) 697
Fnu4HI GCNGC 4 cut(s) 321, 684, 813, 839
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 321, 684, 813, 839
FspBI CTAG 3 cut(s) 210, 224, 710
GluI GCNGC 4 cut(s) 321, 684, 813, 839
HaeIII GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
HapII CCGG 1 cut(s) 726
HgaI GACGC 1 cut(s) 724
HincII GTYRAC 3 cut(s) 105, 372, 739
HindII GTYRAC 3 cut(s) 105, 372, 739
HinfI GANTC 9 cut(s) 8, 51, 90, 155, 218, 448, 470, 480, 706
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 726
HphI GGTGA 4 cut(s) 176, 280, 465, 547
Hpy166II GTNNAC 5 cut(s) 105, 271, 372, 629, 739
Hpy188I TCNGA 3 cut(s) 56, 469, 880
Hpy188III TCNNGA 1 cut(s) 823
Hpy8I GTNNAC 5 cut(s) 105, 271, 372, 629, 739
HpyAV CCTTC 3 cut(s) 467, 660, 800
HpyCH4V TGCA 6 cut(s) 26, 110, 323, 406, 695, 815
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 206, 326, 335, 692, 858
HpyF3I CTNAG 3 cut(s) 243, 548, 569
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 4 cut(s) 307, 695, 799, 825
MaeI CTAG 3 cut(s) 210, 224, 710
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 4 cut(s) 133, 407, 587, 815
MfeI CAATTG 1 cut(s) 324
MluCI AATT 8 cut(s) 230, 282, 324, 412, 509, 543, 826, 863
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 8 cut(s) 12, 91, 119, 173, 340, 508, 626, 696
Mph1103I ATGCAT 1 cut(s) 697
MseI TTAA 4 cut(s) 68, 104, 389, 486
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 726
MspR9I CCNGG 2 cut(s) 726, 753
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 404, 697
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 6 cut(s) 168, 206, 326, 335, 692, 858
NciI CCSGG 1 cut(s) 726
NdeII GATC 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 853
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 697
OliI CACNNNNGTG 1 cut(s) 98
PceI AGGCCT 1 cut(s) 129
PctI GAATGC 2 cut(s) 404, 697
PfeI GAWTC 8 cut(s) 8, 51, 90, 218, 448, 470, 480, 706
PkrI GCNGC 4 cut(s) 322, 685, 814, 840
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 751
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 1 cut(s) 853
PspPI GGNCC 2 cut(s) 169, 851
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 3 cut(s) 424, 553, 722
RsaNI GTAC 3 cut(s) 423, 552, 721
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 4 cut(s) 68, 104, 389, 486
SatI GCNGC 4 cut(s) 321, 684, 813, 839
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 2 cut(s) 169, 851
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 726, 753
SfcI CTRYAG 1 cut(s) 294
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 858
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 8 cut(s) 230, 282, 324, 412, 509, 543, 826, 863
SseBI AGGCCT 1 cut(s) 129
SsiI CCGC 1 cut(s) 98
SspMI CTAG 3 cut(s) 210, 224, 710
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 724, 751
TaqI TCGA 2 cut(s) 83, 258
TaqII GACCGA 1 cut(s) 864
TasI AATT 8 cut(s) 230, 282, 324, 412, 509, 543, 826, 863
TatI WGTACW 1 cut(s) 551
TfiI GAWTC 8 cut(s) 8, 51, 90, 218, 448, 470, 480, 706
Tru1I TTAA 4 cut(s) 68, 104, 389, 486
Tru9I TTAA 4 cut(s) 68, 104, 389, 486
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 4 cut(s) 320, 683, 812, 838
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 223, 483, 603, 704
TspRI CASTG 1 cut(s) 100
XapI RAATTY 2 cut(s) 543, 826
XspI CTAG 3 cut(s) 210, 224, 710
ZrmI AGTACT 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.