MD01G1053100.v1.1

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000170
Physical Location & Seq
Forward (+)
15806221 .. 15808322
2102 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1053100.v1.1.491

Sequence Viewer

Length: 894 bp
ATGGCAGAAGCAAGTAAAAGGTATGCAGTTGTGACAGGGGCAAACAAAGGGGTTGGATTTGGAATTGTTAAGCAGTTGGCTTCAAATGGGGTCATAGTAGTGTTAACTGCAAGAGATGAGAAGAGGGGTCTTGAAGCTGTTGAGAAATTGAAAGATTTTGGGCTCTCTGAGCTTGTGGTTTTTCATCAGCTTGATGTTACAGATTCTGCTAGCATTACTTCCCTTGCAGGTTTGGTCAAAACCCAATTCGCGAAACTCGATATCTTGGTAAACAATGCAGGAATCAATGGAAGCATGGTAGACCCTGAAAGTTTCAGGTCAGCTGTAAGTGGTAAGAAGCCTGAAGAAATCGATTTTAGTGAAATATCGACGACACCAAACTACGAGTTAGCAGAAGAATGCCTTAAAACAAACTACTACGGTGCCAAAAGTGTGACTGAAGCGCTTTTGCCTCTCCTCCAGCTATCGGATTCACCAAGAATCGTTAATGTTTCTTCCCTTCTTGCTAAGCTGACGAATTTTCCAAATGGAAGGACCAAAGAGGTACTTAGTGATGCTGAGATCATTACCGAAGAGAGAATAGAAGCTGTTTTGAGTGAGTTTTTGGAAGACTATAAACATGATTTGCTAGAAACCAAAGGCTGGTCTCACATCTTTCCAGCCTACAAAGTCTCGAAAGCAGCCTTGAATGCGTACACTAGGATTCTGGCCAAGAAGTATCCGAATTTCTGCATCAACTGTGGGAGCCCTGGGTTAGTAAAAACAGATATGAGCTTCAATCTTGGTGTCTTAACCATCGATGAAGGTGCTGAAAGCATCGTCAGGTTGGCGCTACTCCCCAATGGCGGTCCTACTGGCCTATACTTTGTCCGCAAAGAAATGACACCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

298

Amino Acids

32.33

Weight (kDa)

5.45

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 171 2.7e-24 short chain dehydrogenase
adh_short_C2 PF13561 13 - 170 1.7e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 642
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 251
AciI CCGC 2 cut(s) 846, 871
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 2 cut(s) 517, 724
AcuI CTGAAG 2 cut(s) 363, 459
AfaI GTAC 2 cut(s) 546, 695
AfeI AGCGCT 1 cut(s) 444
AfiI CCNNNNNNNGG 3 cut(s) 466, 642, 845
AgsI TTSAA 5 cut(s) 84, 134, 151, 688, 778
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 8 cut(s) 137, 172, 190, 323, 463, 511, 587, 774
AluI AGCT 8 cut(s) 137, 172, 190, 323, 463, 511, 587, 774
Alw26I GTCTC 2 cut(s) 651, 676
AlwNI CAGNNNCTG 1 cut(s) 206
Aor51HI AGCGCT 1 cut(s) 444
AoxI GGCC 2 cut(s) 708, 856
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 2 cut(s) 517, 724
AspLEI GCGC 2 cut(s) 445, 832
AspS9I GGNCC 2 cut(s) 534, 848
AsuHPI GGTGA 1 cut(s) 465
AsuNHI GCTAGC 1 cut(s) 209
AvaII GGWCC 2 cut(s) 534, 848
BalI TGGCCA 1 cut(s) 710
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 2 cut(s) 165, 749
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 1 cut(s) 692
BccI CCATC 1 cut(s) 803
BcgI CGANNNNNNTGC 2 cut(s) 788, 822
BciT130I CCWGG 1 cut(s) 750
BciVI GTATCC 1 cut(s) 729
BcoDI GTCTC 2 cut(s) 651, 676
BfaI CTAG 3 cut(s) 210, 629, 699
BfoI RGCGCY 2 cut(s) 446, 833
BfuAI ACCTGC 1 cut(s) 218
BfuI GTATCC 1 cut(s) 729
BisI GCNGC 1 cut(s) 681
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 682
Bme1390I CCNGG 1 cut(s) 750
Bme18I GGWCC 2 cut(s) 534, 848
BmgT120I GGNCC 2 cut(s) 534, 848
BmiI GGNNCC 2 cut(s) 424, 746
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 3 cut(s) 544, 741, 825
BmtI GCTAGC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 615
BpmI CTGGAG 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 507
Bsa29I ATCGAT 2 cut(s) 351, 798
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 2 cut(s) 748, 749
Bsc4I CCNNNNNNNGG 3 cut(s) 466, 642, 845
Bse1I ACTGG 1 cut(s) 859
BseBI CCWGG 1 cut(s) 750
BseCI ATCGAT 2 cut(s) 351, 798
BseDI CCNNGG 2 cut(s) 748, 749
BseLI CCNNNNNNNGG 3 cut(s) 466, 642, 845
BseMII CTCAG 2 cut(s) 159, 549
BseNI ACTGG 1 cut(s) 859
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 2 cut(s) 710, 858
BshNI GGYRCC 1 cut(s) 422
BshVI ATCGAT 2 cut(s) 351, 798
BslI CCNNNNNNNGG 3 cut(s) 466, 642, 845
BsmAI GTCTC 2 cut(s) 651, 676
BsmI GAATGC 2 cut(s) 404, 694
BsnI GGCC 2 cut(s) 710, 858
Bso31I GGTCTC 1 cut(s) 651
Bsp1286I GDGCHC 2 cut(s) 165, 749
Bsp143I GATC 1 cut(s) 561
Bsp1720I GCTNAGC 1 cut(s) 507
Bsp68I TCGCGA 1 cut(s) 251
BspACI CCGC 2 cut(s) 846, 871
BspANI GGCC 2 cut(s) 710, 858
BspCNI CTCAG 2 cut(s) 160, 550
BspDI ATCGAT 2 cut(s) 351, 798
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 424, 746
BspMI ACCTGC 1 cut(s) 218
BspOI GCTAGC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 651
BsrI ACTGG 1 cut(s) 859
BssECI CCNNGG 2 cut(s) 748, 749
BssMI GATC 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 422, 740
Bst6I CTCTTC 2 cut(s) 116, 567
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 4 cut(s) 168, 507, 548, 558
BstFNI CGCG 1 cut(s) 251
BstH2I RGCGCY 2 cut(s) 446, 833
BstHHI GCGC 2 cut(s) 445, 832
BstKTI GATC 1 cut(s) 564
BstMAI GTCTC 2 cut(s) 651, 676
BstMBI GATC 1 cut(s) 561
BstMWI GCNNNNNNNGC 2 cut(s) 169, 689
BstNI CCWGG 1 cut(s) 750
BstSCI CCNGG 1 cut(s) 748
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 692
BstV2I GAAGAC 1 cut(s) 615
Bsu15I ATCGAT 2 cut(s) 351, 798
BsuI GTATCC 1 cut(s) 729
BsuRI GGCC 2 cut(s) 710, 858
BsuTUI ATCGAT 2 cut(s) 351, 798
BtuMI TCGCGA 1 cut(s) 251
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 211
CaiI CAGNNNCTG 1 cut(s) 206
CfoI GCGC 2 cut(s) 445, 832
Cfr13I GGNCC 2 cut(s) 534, 848
ClaI ATCGAT 2 cut(s) 351, 798
Csp6I GTAC 2 cut(s) 545, 694
CviAII CATG 2 cut(s) 295, 620
CviQI GTAC 2 cut(s) 545, 694
DdeI CTNAG 4 cut(s) 168, 507, 548, 558
DpnI GATC 1 cut(s) 563
DpnII GATC 1 cut(s) 561
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 2 cut(s) 116, 567
EarI CTCTTC 2 cut(s) 116, 567
Eco24I GRGCYC 2 cut(s) 165, 749
Eco31I GGTCTC 1 cut(s) 651
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 534, 848
Eco47III AGCGCT 1 cut(s) 444
Eco57I CTGAAG 2 cut(s) 363, 459
EcoRII CCWGG 1 cut(s) 748
EcoRV GATATC 1 cut(s) 262
EcoT38I GRGCYC 2 cut(s) 165, 749
FaeI CATG 2 cut(s) 298, 623
FaiI YATR 7 cut(s) 24, 95, 296, 615, 621, 770, 862
FalI AAGNNNNNCTT 4 cut(s) 387, 419, 531, 563
FatI CATG 2 cut(s) 294, 619
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 681
FriOI GRGCYC 2 cut(s) 165, 749
Fsp4HI GCNGC 1 cut(s) 681
FspBI CTAG 3 cut(s) 210, 629, 699
GlaI GCGC 2 cut(s) 444, 831
GluI GCNGC 1 cut(s) 681
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 2 cut(s) 446, 833
HaeIII GGCC 2 cut(s) 710, 858
HhaI GCGC 2 cut(s) 445, 832
Hin1II CATG 2 cut(s) 298, 623
Hin6I GCGC 2 cut(s) 443, 830
HinP1I GCGC 2 cut(s) 443, 830
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 5 cut(s) 203, 282, 470, 480, 703
HpaI GTTAAC 1 cut(s) 105
HphI GGTGA 1 cut(s) 465
Hpy166II GTNNAC 4 cut(s) 105, 271, 301, 696
Hpy188I TCNGA 3 cut(s) 169, 469, 723
Hpy188III TCNNGA 3 cut(s) 131, 250, 673
Hpy8I GTNNAC 4 cut(s) 105, 271, 301, 696
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 3 cut(s) 509, 525, 797
HpyCH4III ACNGT 2 cut(s) 422, 740
HpyCH4V TGCA 5 cut(s) 26, 110, 227, 278, 732
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 689
HpyF3I CTNAG 4 cut(s) 168, 507, 548, 558
Hsp92II CATG 2 cut(s) 298, 623
HspAI GCGC 2 cut(s) 443, 830
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 561
LmnI GCTCC 1 cut(s) 744
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 3 cut(s) 544, 741, 825
MaeI CTAG 3 cut(s) 210, 629, 699
MaeIII GTNAC 3 cut(s) 31, 196, 433
MalI GATC 1 cut(s) 563
MboI GATC 1 cut(s) 561
MboII GAAGA 6 cut(s) 133, 356, 407, 486, 584, 620
MhlI GDGCHC 2 cut(s) 165, 749
MlsI TGGCCA 1 cut(s) 710
MluCI AATT 5 cut(s) 63, 146, 245, 517, 724
MluNI TGGCCA 1 cut(s) 710
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 4 cut(s) 117, 462, 467, 535
Mox20I TGGCCA 1 cut(s) 710
MscI TGGCCA 1 cut(s) 710
MseI TTAA 5 cut(s) 69, 104, 405, 486, 791
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 710
MspA1I CMGCKG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 750
Mva1269I GAATGC 2 cut(s) 404, 694
MvaI CCWGG 1 cut(s) 750
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 169, 689
NdeII GATC 1 cut(s) 561
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 2 cut(s) 298, 623
NlaIV GGNNCC 2 cut(s) 424, 746
NmuCI GTSAC 2 cut(s) 31, 433
NruI TCGCGA 1 cut(s) 251
PasI CCCWGGG 1 cut(s) 749
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 2 cut(s) 404, 694
PfeI GAWTC 5 cut(s) 203, 282, 470, 480, 703
PflMI CCANNNNNTGG 1 cut(s) 642
PkrI GCNGC 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 2 cut(s) 424, 746
PspPI GGNCC 2 cut(s) 534, 848
PstNI CAGNNNCTG 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 323
RruI TCGCGA 1 cut(s) 251
RsaI GTAC 2 cut(s) 546, 695
RsaNI GTAC 2 cut(s) 545, 694
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 5 cut(s) 69, 104, 405, 486, 791
SatI GCNGC 1 cut(s) 681
Sau3AI GATC 1 cut(s) 561
Sau96I GGNCC 2 cut(s) 534, 848
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 2 cut(s) 165, 749
SfaNI GCATC 3 cut(s) 544, 741, 825
SinI GGWCC 2 cut(s) 534, 848
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 5 cut(s) 63, 146, 245, 517, 724
SsiI CCGC 2 cut(s) 846, 871
SspMI CTAG 3 cut(s) 210, 629, 699
StyD4I CCNGG 1 cut(s) 748
TaaI ACNGT 2 cut(s) 422, 740
TaqI TCGA 5 cut(s) 258, 351, 368, 674, 798
TasI AATT 5 cut(s) 63, 146, 245, 517, 724
TfiI GAWTC 5 cut(s) 203, 282, 470, 480, 703
Tru1I TTAA 5 cut(s) 69, 104, 405, 486, 791
Tru9I TTAA 5 cut(s) 69, 104, 405, 486, 791
TseFI GTSAC 2 cut(s) 31, 433
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 2 cut(s) 31, 433
TspDTI ATGAA 2 cut(s) 173, 816
Van91I CCANNNNNTGG 1 cut(s) 642
VpaK11BI GGWCC 2 cut(s) 534, 848
XapI RAATTY 2 cut(s) 517, 724
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 3 cut(s) 210, 629, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.