Rh1DG245200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000170
Physical Location & Seq
Forward (+)
45967033 .. 45967404
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG245200.1

Sequence Viewer

Length: 372 bp
ATGCTGATCGAGAATCTTACAGAAGAGAGAGTGGATGAGGTTTTGAGGGAGTTTCTAAAAGACTTCAAAGAAGATATGCTGGAAACCAAAGGCTGGCCTACTTCTCTTTCTGCATATATACTCTCCAAAGCAGCCTTGAATGCATACTCTAGAATTGTGGCCAAGAAGTACACAAACATCGGCGTCAATTGTGTCTGCCCTGGATTTGTTAAAACAGAAATGAGCTTCAATGCTGGTGTCTTAACCCCTGATGAAGCTGCTGAAATTATTGTGCGGTTAACAGTGTTTCCAAATGGCAATCCTTCTGGACTCTGCTTCTCTTCAGAAGAAGTCTCACCGTATAATATACTCTTTCAATTTTATACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

4.71

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 29 - 79 1.5e-07 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 35 - 75 3e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 93
AciI CCGC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 4 cut(s) 67, 139, 229, 356
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 2 cut(s) 225, 257
AluI AGCT 2 cut(s) 225, 257
Alw26I GTCTC 1 cut(s) 337
AoxI GGCC 2 cut(s) 95, 159
ApeKI GCWGC 2 cut(s) 131, 257
AsuHPI GGTGA 1 cut(s) 327
BalI TGGCCA 1 cut(s) 161
BbvI GCAGC 2 cut(s) 143, 244
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 1 cut(s) 150
BisI GCNGC 2 cut(s) 132, 258
BlsI GCNGC 2 cut(s) 133, 259
Bme1390I CCNGG 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 143, 244
BshFI GGCC 2 cut(s) 97, 161
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 337
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 2 cut(s) 97, 161
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 1 cut(s) 274
BspANI GGCC 2 cut(s) 97, 161
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 283, 339
Bst6I CTCTTC 2 cut(s) 18, 325
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 143, 244
BsuRI GGCC 2 cut(s) 97, 161
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 95
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 6 cut(s) 93, 97, 134, 161, 225, 257
CviKI_1 RGCY 6 cut(s) 93, 97, 134, 161, 225, 257
CviQI GTAC 1 cut(s) 169
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 18, 325
EarI CTCTTC 2 cut(s) 18, 325
Eco57I CTGAAG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 145
FaiI YATR 8 cut(s) 77, 115, 117, 119, 145, 342, 347, 363
Fnu4HI GCNGC 2 cut(s) 132, 258
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 132, 258
FspBI CTAG 1 cut(s) 150
GluI GCNGC 2 cut(s) 132, 258
HaeIII GGCC 2 cut(s) 97, 161
HgaI GACGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 2 cut(s) 13, 309
HpaI GTTAAC 1 cut(s) 279
HphI GGTGA 1 cut(s) 327
Hpy166II GTNNAC 2 cut(s) 171, 279
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 3 cut(s) 10, 150, 306
Hpy8I GTNNAC 2 cut(s) 171, 279
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 2 cut(s) 283, 339
HpyCH4V TGCA 2 cut(s) 113, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 183
KspAI GTTAAC 1 cut(s) 279
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 7 cut(s) 65, 79, 186, 213, 219, 261, 291
Lsp1109I GCAGC 2 cut(s) 143, 244
MaeI CTAG 1 cut(s) 150
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 35, 83, 312, 338
MfeI CAATTG 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 4 cut(s) 153, 187, 264, 356
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 1 cut(s) 303
MnlI CCTC 2 cut(s) 31, 39
Mox20I TGGCCA 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 145
MscI TGGCCA 1 cut(s) 161
MseI TTAA 3 cut(s) 210, 242, 278
Msp20I TGGCCA 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 145
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 2 cut(s) 133, 259
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 210, 242, 278
SatI GCNGC 2 cut(s) 132, 258
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 201
SetI ASST 3 cut(s) 42, 227, 259
Sse9I AATT 4 cut(s) 153, 187, 264, 356
SsiI CCGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 2 cut(s) 283, 339
TaqI TCGA 1 cut(s) 9
TasI AATT 4 cut(s) 153, 187, 264, 356
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 3 cut(s) 210, 242, 278
Tru9I TTAA 3 cut(s) 210, 242, 278
TscAI CASTG 1 cut(s) 288
TseI GCWGC 2 cut(s) 131, 257
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 288
Van91I CCANNNNNTGG 1 cut(s) 93
XbaI TCTAGA 1 cut(s) 149
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.