Rw1G021650

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000170
Physical Location & Seq
Forward (+)
46006744 .. 46008050
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021650.1

Sequence Viewer

Length: 885 bp
ATGGCAGAAGCAACAAAGAGGTATGCAGTTGTTACAGGATCAAACAAAGGAATTGGATTCGAAACTGTGAGGCAGTTGGTCTTAAATGGAATCACTGTGGTCTTAACTGCTAGAGATGAGAAGAGGGGACTTGAAGCTGTTGAGAAACTGAAAAAGTCTGGCCTCTCAGGCCAAGTGATTTTCCACCAACTTGATGTGGCTGACCCTGCTAGTATTGCTGCTTTGGCACAATTCATCAAAACCCAGTTCGGGAAGCTCGATATCTTGGTGAACAATGCAGGGATTGGTGGATCCATAATTGATGCTGATGGTGCTAAAGATGCAGTTGCAGCTGGAGGACAAATTGATTGGCAAAAACTGGTGACAGAAACTTATGAATTAACAGAAGAATGCTTGCAAATCAATTATTATGGAGCTAAAAGAACATCCGAAGCACTTATTCCACTCCTTGAGCTATCTGATTCACCAAGAATTGTTAATGTTTCATCCTCTATGGGAAAGTTAAAGAACATGCCAAGTGATAGGGTAAAAGAAATTTTTACTGATGTAGAGAACCTGAGGGAAGAGAGTGTAGATGAAGTATTGACAGAGTTTCTTAAGGACTACAAGGAGGGTTCACTTGAAAGCAAGGGCTGGCCTTCTTCTATGTCAGGCTATACAGTTTCCAAAACAGCACTAAATGCATATACAAGGATTCTAGCCAAGAAGTACCCCGGTTTTCGTGTCAACTGTGTCTGCCCCGGCTATGTCAAAACAGATTTGAACTTCAATGCCGGTGTCGTGCCTGTTGAAGAAGGTGCTGCAAATTCTGTGAGGTTAGCACTGCTGCCCAGTGATGGCCCTTCTGGCAAATTCTTTGTTCGGTCTGAAGTTAGCATCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

294

Amino Acids

31.87

Weight (kDa)

5.51

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 169 7.1e-28 short chain dehydrogenase
KR PF08659 10 - 96 1.8e-06 KR domain
adh_short_C2 PF13561 15 - 171 2e-18 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 210 - 255 3.3e-07 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 214 - 255 3.5e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 46, 285, 298
AcsI RAATTY 3 cut(s) 534, 805, 851
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 2 cut(s) 249, 836
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 5 cut(s) 134, 623, 763, 769, 791
AluBI AGCT 5 cut(s) 137, 256, 332, 416, 454
AluI AGCT 5 cut(s) 137, 256, 332, 416, 454
AlwI GGATC 3 cut(s) 46, 285, 298
AoxI GGCC 4 cut(s) 160, 169, 635, 838
ApeKI GCWGC 4 cut(s) 218, 329, 800, 826
ApoI RAATTY 3 cut(s) 534, 805, 851
AspS9I GGNCC 1 cut(s) 839
AsuC2I CCSGG 2 cut(s) 714, 741
AsuHPI GGTGA 3 cut(s) 280, 373, 456
AsuII TTCGAA 1 cut(s) 60
AxyI CCTNAGG 1 cut(s) 557
BamHI GGATCC 1 cut(s) 290
BbvI GCAGC 4 cut(s) 205, 341, 787, 813
BccI CCATC 2 cut(s) 302, 830
BcnI CCSGG 2 cut(s) 714, 741
BfaI CTAG 3 cut(s) 111, 210, 698
BfrI CTTAAG 1 cut(s) 596
BglI GCCNNNNNGGC 2 cut(s) 168, 846
BisI GCNGC 4 cut(s) 219, 330, 801, 827
BlsI GCNGC 4 cut(s) 220, 331, 802, 828
Bme1390I CCNGG 2 cut(s) 714, 741
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 714, 741
BmrI ACTGGG 2 cut(s) 238, 825
BmsI GCATC 2 cut(s) 292, 310
BmuI ACTGGG 2 cut(s) 238, 825
BpmI CTGGAG 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 714, 741
BsaJI CCNNGG 2 cut(s) 712, 739
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 836
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 3 cut(s) 244, 363, 831
Bse21I CCTNAGG 1 cut(s) 557
BseDI CCNNGG 2 cut(s) 712, 739
BseGI GGATG 2 cut(s) 425, 485
BseLI CCNNNNNNNGG 2 cut(s) 249, 836
BseMII CTCAG 2 cut(s) 180, 548
BseNI ACTGG 3 cut(s) 244, 363, 831
BseXI GCAGC 4 cut(s) 205, 341, 787, 813
BshFI GGCC 4 cut(s) 162, 171, 637, 840
BsiSI CCGG 3 cut(s) 714, 741, 774
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 249, 836
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 4 cut(s) 162, 171, 637, 840
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 38, 290
BspANI GGCC 4 cut(s) 162, 171, 637, 840
BspCNI CTCAG 2 cut(s) 179, 549
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 3 cut(s) 46, 285, 298
BspT104I TTCGAA 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 596
BsrFI RCCGGY 1 cut(s) 773
BsrI ACTGG 3 cut(s) 244, 363, 831
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 2 cut(s) 712, 739
BssMI GATC 2 cut(s) 38, 290
Bst4CI ACNGT 4 cut(s) 67, 97, 661, 731
Bst6I CTCTTC 2 cut(s) 116, 558
BstAFI CTTAAG 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 680
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 395, 635
BstDEI CTNAG 2 cut(s) 166, 557
BstF5I GGATG 2 cut(s) 425, 485
BstKTI GATC 2 cut(s) 41, 293
BstMBI GATC 2 cut(s) 38, 290
BstMWI GCNNNNNNNGC 9 cut(s) 168, 206, 215, 224, 311, 320, 329, 680, 846
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 2 cut(s) 712, 739
BstV1I GCAGC 4 cut(s) 205, 341, 787, 813
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
Bsu36I CCTNAGG 1 cut(s) 557
BsuRI GGCC 4 cut(s) 162, 171, 637, 840
BtsCI GGATG 2 cut(s) 425, 485
BtsI GCAGTG 1 cut(s) 821
BtsIMutI CAGTG 3 cut(s) 93, 821, 838
Cac8I GCNNGC 2 cut(s) 395, 635
Cfr10I RCCGGY 1 cut(s) 773
Cfr13I GGNCC 1 cut(s) 839
Csp6I GTAC 1 cut(s) 709
CviAII CATG 1 cut(s) 511
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 2 cut(s) 166, 557
DpnI GATC 2 cut(s) 40, 292
DpnII GATC 2 cut(s) 38, 290
Eam1104I CTCTTC 2 cut(s) 116, 558
EarI CTCTTC 2 cut(s) 116, 558
Eco32I GATATC 1 cut(s) 262
Eco81I CCTNAGG 1 cut(s) 557
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 685
FaeI CATG 1 cut(s) 514
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 510
Fnu4HI GCNGC 4 cut(s) 219, 330, 801, 827
FokI GGATG 2 cut(s) 412, 472
Fsp4HI GCNGC 4 cut(s) 219, 330, 801, 827
FspBI CTAG 3 cut(s) 111, 210, 698
GluI GCNGC 4 cut(s) 219, 330, 801, 827
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 4 cut(s) 162, 171, 637, 840
HapII CCGG 3 cut(s) 714, 741, 774
Hin1II CATG 1 cut(s) 514
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 4 cut(s) 57, 90, 461, 694
HpaII CCGG 3 cut(s) 714, 741, 774
HphI GGTGA 3 cut(s) 280, 373, 456
Hpy166II GTNNAC 3 cut(s) 271, 617, 727
Hpy188I TCNGA 3 cut(s) 430, 460, 868
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 3 cut(s) 271, 617, 727
HpyAV CCTTC 3 cut(s) 648, 788, 852
HpyCH4III ACNGT 4 cut(s) 67, 97, 661, 731
HpyCH4V TGCA 7 cut(s) 26, 278, 323, 329, 397, 683, 803
HpyF10VI GCNNNNNNNGC 9 cut(s) 168, 206, 215, 224, 311, 320, 329, 680, 846
HpyF3I CTNAG 2 cut(s) 166, 557
Hsp92II CATG 1 cut(s) 514
Kzo9I GATC 2 cut(s) 38, 290
LmnI GCTCC 1 cut(s) 413
Lsp1109I GCAGC 4 cut(s) 205, 341, 787, 813
LweI GCATC 2 cut(s) 292, 310
MaeI CTAG 3 cut(s) 111, 210, 698
MaeIII GTNAC 2 cut(s) 31, 361
MalI GATC 2 cut(s) 40, 292
MboI GATC 2 cut(s) 38, 290
MboII GAAGA 5 cut(s) 133, 398, 575, 633, 803
MflI RGATCY 1 cut(s) 290
MnlI CCTC 9 cut(s) 12, 63, 117, 173, 329, 499, 552, 604, 807
Mph1103I ATGCAT 1 cut(s) 685
MseI TTAA 6 cut(s) 83, 104, 380, 477, 503, 597
MspA1I CMGCKG 1 cut(s) 332
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 3 cut(s) 714, 741, 774
MspR9I CCNGG 2 cut(s) 714, 741
Mva1269I GAATGC 1 cut(s) 395
MwoI GCNNNNNNNGC 9 cut(s) 168, 206, 215, 224, 311, 320, 329, 680, 846
NciI CCSGG 2 cut(s) 714, 741
NdeII GATC 2 cut(s) 38, 290
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 685
NspI RCATGY 1 cut(s) 514
NspV TTCGAA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 395
PfeI GAWTC 4 cut(s) 57, 90, 461, 694
PkrI GCNGC 4 cut(s) 220, 331, 802, 828
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 839
PsuI RGATCY 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
SaqAI TTAA 6 cut(s) 83, 104, 380, 477, 503, 597
SatI GCNGC 4 cut(s) 219, 330, 801, 827
Sau3AI GATC 2 cut(s) 38, 290
Sau96I GGNCC 1 cut(s) 839
ScrFI CCNGG 2 cut(s) 714, 741
SetI ASST 9 cut(s) 23, 139, 258, 334, 418, 456, 558, 799, 818
SfaNI GCATC 2 cut(s) 292, 310
SfiI GGCCNNNNNGGCC 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 449, 596
SmoI CTYRAG 2 cut(s) 449, 596
SspMI CTAG 3 cut(s) 111, 210, 698
StyD4I CCNGG 2 cut(s) 712, 739
TaaI ACNGT 4 cut(s) 67, 97, 661, 731
TaqI TCGA 2 cut(s) 60, 258
TaqII GACCGA 1 cut(s) 852
TfiI GAWTC 4 cut(s) 57, 90, 461, 694
Tru1I TTAA 6 cut(s) 83, 104, 380, 477, 503, 597
Tru9I TTAA 6 cut(s) 83, 104, 380, 477, 503, 597
TscAI CASTG 3 cut(s) 100, 828, 838
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 4 cut(s) 218, 329, 800, 826
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 4 cut(s) 223, 390, 474, 591
TspRI CASTG 3 cut(s) 100, 828, 838
Vha464I CTTAAG 1 cut(s) 596
XapI RAATTY 3 cut(s) 534, 805, 851
XceI RCATGY 1 cut(s) 514
XspI CTAG 3 cut(s) 111, 210, 698
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.