Rmu_sc0000687.1_g000020

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000687.1
Physical Location & Seq
Forward (+)
69982 .. 70374
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000687.1_g000020.1.cds

Sequence Viewer

Length: 393 bp
atgaatggagagatgttgttgagtgatgctgagaatcttacagaagagagagtggatgaggttttgagggagtttctaaaagacttcaaagaagatatgctggaaaccaaaggctggcctacttctctttctgcatatatactctccaaagcagccttgaatgcatacactagaattgtggccaagaagtacacaaacatcagcgtcaattgtgtctgccctggatttgttaaaacagaaatgagcttcaatgctggtgtcttaacccctgatgaagctgctgaaatttttgtgcggttaacagtgtttccgaatggcaatccttctggactctacttctcttcagaagaagtctcaccatataatatactctttcaattttatacattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.66

Weight (kDa)

4.55

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 114
AciI CCGC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 4 cut(s) 88, 160, 250, 377
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 246, 278
AluI AGCT 2 cut(s) 246, 278
Alw26I GTCTC 1 cut(s) 358
AoxI GGCC 2 cut(s) 116, 180
ApeKI GCWGC 2 cut(s) 152, 278
ApoI RAATTY 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 348
BalI TGGCCA 1 cut(s) 182
BbvI GCAGC 2 cut(s) 164, 265
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 1 cut(s) 171
BisI GCNGC 2 cut(s) 153, 279
BlsI GCNGC 2 cut(s) 154, 280
Bme1390I CCNGG 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 164, 265
BshFI GGCC 2 cut(s) 118, 182
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 2 cut(s) 118, 182
BspACI CCGC 1 cut(s) 295
BspANI GGCC 2 cut(s) 118, 182
BspCNI CTCAG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 2 cut(s) 39, 346
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 358
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 164, 265
BsuRI GGCC 2 cut(s) 118, 182
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 116
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 190
CviJI RGCY 6 cut(s) 114, 118, 155, 182, 246, 278
CviKI_1 RGCY 6 cut(s) 114, 118, 155, 182, 246, 278
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 39, 346
EarI CTCTTC 2 cut(s) 39, 346
Eco57I CTGAAG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 166
FaiI YATR 9 cut(s) 98, 136, 138, 140, 166, 361, 363, 368, 384
Fnu4HI GCNGC 2 cut(s) 153, 279
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 153, 279
FspBI CTAG 1 cut(s) 171
GluI GCNGC 2 cut(s) 153, 279
HaeIII GGCC 2 cut(s) 118, 182
HgaI GACGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 2 cut(s) 34, 330
HpaI GTTAAC 1 cut(s) 300
HphI GGTGA 1 cut(s) 348
Hpy166II GTNNAC 2 cut(s) 192, 300
Hpy188I TCNGA 2 cut(s) 312, 346
Hpy188III TCNNGA 1 cut(s) 327
Hpy8I GTNNAC 2 cut(s) 192, 300
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 134, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 30
KspAI GTTAAC 1 cut(s) 300
LpnPI CCDG 7 cut(s) 86, 100, 207, 234, 240, 282, 312
Lsp1109I GCAGC 2 cut(s) 164, 265
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 171
MboII GAAGA 4 cut(s) 56, 104, 333, 359
MfeI CAATTG 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 4 cut(s) 174, 208, 285, 377
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 1 cut(s) 324
MnlI CCTC 2 cut(s) 52, 60
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 166
MscI TGGCCA 1 cut(s) 182
MseI TTAA 3 cut(s) 231, 263, 299
Msp20I TGGCCA 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 166
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 2 cut(s) 154, 280
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 3 cut(s) 231, 263, 299
SatI GCNGC 2 cut(s) 153, 279
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 222
SetI ASST 3 cut(s) 63, 248, 280
SfaNI GCATC 1 cut(s) 16
Sse9I AATT 4 cut(s) 174, 208, 285, 377
SsiI CCGC 1 cut(s) 295
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 304
TasI AATT 4 cut(s) 174, 208, 285, 377
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 3 cut(s) 231, 263, 299
Tru9I TTAA 3 cut(s) 231, 263, 299
TscAI CASTG 1 cut(s) 309
TseI GCWGC 2 cut(s) 152, 278
TspDTI ATGAA 2 cut(s) 17, 288
TspRI CASTG 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 114
XapI RAATTY 1 cut(s) 285
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.