FvH4_7g13602

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000170
Physical Location & Seq
Forward (+)
12180336 .. 12181042
707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13602.t1

Sequence Viewer

Length: 615 bp
ATGCAAAGGTTACTGATATTTATGACTAGTAGAATATATGCGTCTTCTCCATTGGTGCAGGATGATGTAGAAGTCGATTTGAGTAAGCTAATCACTCAAACATACGAGTTAGCTGCAGAATGTGTTAAAACAAACTACTATGGTGCCAAGAAAATGACTGAAGCATTCCTTCCTCTCCTTCAGCTGTCTGATTCTCCAAGAGTTTCCAATATTACTTCTGGCGTGGGACAGTTAACGCATATACCAAATGACTGGGCAAAGAGGGTGTTGAGTGATGCTGAGAATCTTACAGAAGAGAAAATAGATGAGGTATTGAGCGAGTTTCTAAAGGACTTCAAAGAAGATATGCTGGAAACCAAAGGTTGGCCTACTGCCCTCTCTGCATATATAGTCTCCAAAGCAGCCTTGACTGCTTACACTAGAATTGTAGCCAAGAAGCACACAAACTTCGGCGTCAATTGTGTCTGCCCCGGGTTTGTCAAAACAGAAATGAGCTTCAATGCTGGAGTCTTGACCCCCGATGAAGCTGCTGAGATTATCGTGCGGTTAACAGTGTTTCCGAATGGCAATCCTACTGGACTCTTCTTCTCTTCAGAAGAAGTTTCACCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

205

Amino Acids

22.64

Weight (kDa)

4.93

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 119 - 168 1.5e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 363
AciI CCGC 1 cut(s) 544
AcuI CTGAAG 3 cut(s) 164, 180, 576
AcyI GRCGYC 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 2 cut(s) 337, 499
AhlI ACTAGT 1 cut(s) 26
AluBI AGCT 5 cut(s) 88, 113, 184, 495, 527
AluI AGCT 5 cut(s) 88, 113, 184, 495, 527
Alw26I GTCTC 1 cut(s) 397
Ama87I CYCGRG 1 cut(s) 470
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 3 cut(s) 113, 401, 527
AsuC2I CCSGG 2 cut(s) 471, 472
AsuHPI GGTGA 1 cut(s) 597
AvaI CYCGRG 1 cut(s) 470
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 100, 413, 514
BcgI CGANNNNNNTGC 4 cut(s) 95, 129, 509, 543
BcnI CCSGG 2 cut(s) 471, 472
BcoDI GTCTC 1 cut(s) 397
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 2 cut(s) 27, 420
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 3 cut(s) 114, 402, 528
BlsI GCNGC 3 cut(s) 115, 403, 529
Bme1390I CCNGG 2 cut(s) 471, 472
BmeT110I CYCGRG 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 471, 472
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 525
BpuMI CCSGG 2 cut(s) 471, 472
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 2 cut(s) 469, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 2 cut(s) 257, 580
BseDI CCNNGG 2 cut(s) 469, 470
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 270, 522
BseNI ACTGG 2 cut(s) 257, 580
BseXI GCAGC 3 cut(s) 100, 413, 514
BsgI GTGCAG 1 cut(s) 77
BshFI GGCC 1 cut(s) 367
BshNI GGYRCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 470
BspACI CCGC 1 cut(s) 544
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 2 cut(s) 271, 523
BspLI GGNNCC 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 2 cut(s) 257, 580
BssECI CCNNGG 2 cut(s) 469, 470
BssNI GRCGYC 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 231, 553
Bst6I CTCTTC 3 cut(s) 288, 587, 595
BstACI GRCGYC 1 cut(s) 453
BstDEI CTNAG 2 cut(s) 279, 531
BstF5I GGATG 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 397
BstMWI GCNNNNNNNGC 2 cut(s) 380, 410
BstSCI CCNGG 2 cut(s) 469, 470
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 100, 413, 514
BstV2I GAAGAC 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 252
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 558
Cfr9I CCCGGG 1 cut(s) 470
CseI GACGC 2 cut(s) 30, 442
CviJI RGCY 8 cut(s) 88, 113, 184, 367, 404, 431, 495, 527
CviKI_1 RGCY 8 cut(s) 88, 113, 184, 367, 404, 431, 495, 527
DdeI CTNAG 2 cut(s) 279, 531
Eam1104I CTCTTC 3 cut(s) 288, 587, 595
EarI CTCTTC 3 cut(s) 288, 587, 595
Eco57I CTGAAG 3 cut(s) 164, 180, 576
Eco88I CYCGRG 1 cut(s) 470
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 114, 402, 528
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 114, 402, 528
FspBI CTAG 2 cut(s) 27, 420
GluI GCNGC 3 cut(s) 114, 402, 528
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 1 cut(s) 367
HapII CCGG 1 cut(s) 471
HgaI GACGC 2 cut(s) 30, 442
Hin1I GRCGYC 1 cut(s) 453
HincII GTYRAC 2 cut(s) 234, 549
HindII GTYRAC 2 cut(s) 234, 549
HinfI GANTC 4 cut(s) 191, 283, 507, 579
HpaI GTTAAC 2 cut(s) 234, 549
HpaII CCGG 1 cut(s) 471
HphI GGTGA 1 cut(s) 597
Hpy166II GTNNAC 2 cut(s) 234, 549
Hpy188I TCNGA 3 cut(s) 190, 561, 595
Hpy188III TCNNGA 1 cut(s) 511
Hpy8I GTNNAC 2 cut(s) 234, 549
HpyAV CCTTC 2 cut(s) 179, 188
HpyCH4III ACNGT 2 cut(s) 231, 553
HpyCH4V TGCA 4 cut(s) 4, 58, 116, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 410
HpyF3I CTNAG 2 cut(s) 279, 531
Hsp92I GRCGYC 1 cut(s) 453
KspAI GTTAAC 2 cut(s) 234, 549
LpnPI CCDG 7 cut(s) 44, 204, 238, 335, 484, 489, 561
Lsp1109I GCAGC 3 cut(s) 100, 413, 514
LweI GCATC 1 cut(s) 265
MaeI CTAG 2 cut(s) 27, 420
MaeIII GTNAC 1 cut(s) 9
MboII GAAGA 7 cut(s) 36, 305, 353, 574, 577, 582, 608
MfeI CAATTG 1 cut(s) 457
MluCI AATT 2 cut(s) 423, 457
MlyI GAGTC 2 cut(s) 516, 573
MnlI CCTC 4 cut(s) 183, 255, 301, 386
MseI TTAA 3 cut(s) 126, 233, 548
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 2 cut(s) 471, 472
MunI CAATTG 1 cut(s) 457
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 380, 410
NciI CCSGG 2 cut(s) 471, 472
NlaIV GGNNCC 1 cut(s) 145
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 191, 283
PflMI CCANNNNNTGG 1 cut(s) 363
PkrI GCNGC 3 cut(s) 115, 403, 529
PleI GAGTC 2 cut(s) 515, 573
PpsI GAGTC 2 cut(s) 515, 573
PspN4I GGNNCC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 184
SaqAI TTAA 3 cut(s) 126, 233, 548
SatI GCNGC 3 cut(s) 114, 402, 528
SchI GAGTC 2 cut(s) 516, 573
ScrFI CCNGG 2 cut(s) 471, 472
SetI ASST 8 cut(s) 11, 90, 115, 186, 312, 364, 497, 529
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 114
SmaI CCCGGG 1 cut(s) 472
SpeI ACTAGT 1 cut(s) 26
Sse9I AATT 2 cut(s) 423, 457
SsiI CCGC 1 cut(s) 544
SspI AATATT 1 cut(s) 211
SspMI CTAG 2 cut(s) 27, 420
StyD4I CCNGG 2 cut(s) 469, 470
TaaI ACNGT 2 cut(s) 231, 553
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 423, 457
TfiI GAWTC 2 cut(s) 191, 283
Tru1I TTAA 3 cut(s) 126, 233, 548
Tru9I TTAA 3 cut(s) 126, 233, 548
TscAI CASTG 1 cut(s) 558
TseI GCWGC 3 cut(s) 113, 401, 527
TspDTI ATGAA 1 cut(s) 537
TspMI CCCGGG 1 cut(s) 470
TspRI CASTG 1 cut(s) 558
Van91I CCANNNNNTGG 1 cut(s) 363
XmaI CCCGGG 1 cut(s) 470
XspI CTAG 2 cut(s) 27, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.