Rw1G021900

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000170
Physical Location & Seq
Reverse (-)
46400726 .. 46407211
6486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021900.1

Sequence Viewer

Length: 903 bp
ATGGCAGAATCAACCAAGAGGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTCGAAAGTGTAAGGCAGTTGGCCTCAAAGGGAATCACTGTGGTCTTAACTGCTAGAGATGAGAAGAGGGGCCTTGAAGCTGTTGAGAAACTTAAAGAGTCTGGCCTCTCAGGCCAAGTTGTTTTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTACTTCTCTGGCACTATTCATCAAAACTCAGTTTGGAAAACTCGATATTTTGGTTAACAATGCAGGGATTGTAGGAGCTATAGTTGATAATACTGATGGTTTTAAAGCTGCAGTTGCAGCAGAACCAGGACAGATTGATTGGAAAAAGCTGTTGACTGAAACTTACGAGTTAAGAGAAGAATGCTTGCAAATTAATTATTATGGTGCTAAGAGAACAGCTGAAGCACTAATTCCACTCCTCCAGCTATCTGATTCACCAAGAATTGTTAATGTTTCATCCTCTATGGGGCAGTTAAAGAACATACCAAGTGATCGAGTGAAAGGAGTTCTTAGTACTGATGTCAAGAACCTAAGCGAAGAGAGTGTAGATGAAATATTGACAGGGTTTCTAAACGACCTCAAGGAGAGTTTACTTGAAAGCAAGGGTTGGCCTTCTGTGATGTCAGGCTATATACTCTCAAAAGCAGCAATGAATGCATATACAAGGATTCTAGCCAAGAAGTACCCCGGTTTTCGTGTCAATTCTGTATGCCCTGGCTATGTCAAAACAGATATAAACTTCAATGGCGGCGTCATTCCTGTTGAAGAAGGTGCTGCAAGTGTTGTAAATTTAGCATTGTTAGCACTGCTGCCCAGTGATGGCCCTTCCGGCCAATTCTTTGTTCGGTCTGAAATTAGCATCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

300

Amino Acids

32.34

Weight (kDa)

5.7

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 171 4e-26 short chain dehydrogenase
KR PF08659 10 - 96 2e-06 KR domain
adh_short_C2 PF13561 15 - 176 8.4e-18 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 211 - 257 3.2e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 783
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 865
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 786
AfaI GTAC 2 cut(s) 550, 719
AfiI CCNNNNNNNGG 2 cut(s) 501, 854
AgsI TTSAA 4 cut(s) 134, 632, 778, 800
AjnI CCWGG 2 cut(s) 340, 748
AjuI GAANNNNNNNTTGG 4 cut(s) 165, 197, 861, 893
AluBI AGCT 6 cut(s) 137, 293, 323, 364, 434, 460
AluI AGCT 6 cut(s) 137, 293, 323, 364, 434, 460
AlwI GGATC 1 cut(s) 46
AoxI GGCC 7 cut(s) 78, 127, 160, 169, 644, 856, 865
ApeKI GCWGC 5 cut(s) 323, 332, 680, 809, 844
ApoI RAATTY 1 cut(s) 823
AseI ATTAAT 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 127, 857
AsuC2I CCSGG 1 cut(s) 723
AsuHPI GGTGA 2 cut(s) 176, 462
AsuII TTCGAA 1 cut(s) 60
BbvI GCAGC 5 cut(s) 310, 344, 692, 796, 831
BccI CCATC 2 cut(s) 305, 848
BciT130I CCWGG 2 cut(s) 342, 750
BcnI CCSGG 1 cut(s) 723
BfaI CTAG 3 cut(s) 111, 210, 707
BfmI CTRYAG 2 cut(s) 294, 324
BglI GCCNNNNNGGC 2 cut(s) 168, 864
BisI GCNGC 6 cut(s) 324, 333, 681, 784, 810, 845
BlsI GCNGC 6 cut(s) 325, 334, 682, 785, 811, 846
BmcAI AGTACT 1 cut(s) 550
Bme1390I CCNGG 3 cut(s) 342, 723, 750
BmgT120I GGNCC 2 cut(s) 127, 857
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 3 cut(s) 342, 723, 750
BmrI ACTGGG 1 cut(s) 843
BmuI ACTGGG 1 cut(s) 843
BpmI CTGGAG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 566
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 1 cut(s) 723
BsaHI GRCGYC 1 cut(s) 786
BsaJI CCNNGG 2 cut(s) 721, 748
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 501, 854
Bse1I ACTGG 1 cut(s) 849
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 2 cut(s) 342, 750
BseDI CCNNGG 2 cut(s) 721, 748
BseGI GGATG 1 cut(s) 491
BseLI CCNNNNNNNGG 2 cut(s) 501, 854
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 2 cut(s) 180, 257
BseNI ACTGG 1 cut(s) 849
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 5 cut(s) 310, 344, 692, 796, 831
BshFI GGCC 7 cut(s) 80, 129, 162, 171, 646, 858, 867
BsiSI CCGG 2 cut(s) 723, 864
BslI CCNNNNNNNGG 2 cut(s) 501, 854
BsmI GAATGC 2 cut(s) 401, 694
BsnI GGCC 7 cut(s) 80, 129, 162, 171, 646, 858, 867
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 38, 526
BspACI CCGC 1 cut(s) 783
BspANI GGCC 7 cut(s) 80, 129, 162, 171, 646, 858, 867
BspCNI CTCAG 2 cut(s) 179, 256
BspLI GGNNCC 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 1 cut(s) 849
BssECI CCNNGG 2 cut(s) 721, 748
BssMI GATC 2 cut(s) 38, 526
BssNI GRCGYC 1 cut(s) 786
Bst2UI CCWGG 2 cut(s) 342, 750
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 116, 567
BstACI GRCGYC 1 cut(s) 786
BstAPI GCANNNNNTGC 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 5 cut(s) 166, 243, 423, 545, 566
BstF5I GGATG 1 cut(s) 491
BstKTI GATC 2 cut(s) 41, 529
BstMBI GATC 2 cut(s) 38, 526
BstMWI GCNNNNNNNGC 7 cut(s) 168, 206, 329, 332, 689, 836, 864
BstNI CCWGG 2 cut(s) 342, 750
BstSCI CCNGG 3 cut(s) 340, 721, 748
BstSFI CTRYAG 2 cut(s) 294, 324
BstV1I GCAGC 5 cut(s) 310, 344, 692, 796, 831
BsuRI GGCC 7 cut(s) 80, 129, 162, 171, 646, 858, 867
BtsCI GGATG 1 cut(s) 491
BtsI GCAGTG 1 cut(s) 839
BtsIMutI CAGTG 3 cut(s) 93, 839, 856
Cac8I GCNNGC 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 127, 857
CseI GACGC 1 cut(s) 775
Csp6I GTAC 2 cut(s) 549, 718
CviQI GTAC 2 cut(s) 549, 718
DdeI CTNAG 5 cut(s) 166, 243, 423, 545, 566
DpnI GATC 2 cut(s) 40, 528
DpnII GATC 2 cut(s) 38, 526
DraI TTTAAA 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 865
Eam1104I CTCTTC 2 cut(s) 116, 567
EarI CTCTTC 2 cut(s) 116, 567
Eco57I CTGAAG 1 cut(s) 456
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 340, 748
EcoT22I ATGCAT 1 cut(s) 694
FalI AAGNNNNNCTT 2 cut(s) 528, 560
Fnu4HI GCNGC 6 cut(s) 324, 333, 681, 784, 810, 845
FokI GGATG 1 cut(s) 478
Fsp4HI GCNGC 6 cut(s) 324, 333, 681, 784, 810, 845
FspBI CTAG 3 cut(s) 111, 210, 707
GluI GCNGC 6 cut(s) 324, 333, 681, 784, 810, 845
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 7 cut(s) 80, 129, 162, 171, 646, 858, 867
HapII CCGG 2 cut(s) 723, 864
HgaI GACGC 1 cut(s) 775
Hin1I GRCGYC 1 cut(s) 786
HincII GTYRAC 2 cut(s) 271, 369
HindII GTYRAC 2 cut(s) 271, 369
HinfI GANTC 7 cut(s) 8, 51, 57, 90, 155, 467, 703
HpaI GTTAAC 1 cut(s) 271
HpaII CCGG 2 cut(s) 723, 864
HphI GGTGA 2 cut(s) 176, 462
Hpy166II GTNNAC 3 cut(s) 271, 369, 626
Hpy188I TCNGA 3 cut(s) 56, 466, 886
Hpy188III TCNNGA 1 cut(s) 559
Hpy8I GTNNAC 3 cut(s) 271, 369, 626
HpyAV CCTTC 3 cut(s) 657, 797, 870
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 7 cut(s) 26, 278, 326, 332, 403, 692, 812
HpyF10VI GCNNNNNNNGC 7 cut(s) 168, 206, 329, 332, 689, 836, 864
HpyF3I CTNAG 5 cut(s) 166, 243, 423, 545, 566
Hsp92I GRCGYC 1 cut(s) 786
KspAI GTTAAC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 38, 526
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 5 cut(s) 310, 344, 692, 796, 831
MaeI CTAG 3 cut(s) 111, 210, 707
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 528
MboI GATC 2 cut(s) 38, 526
MboII GAAGA 4 cut(s) 133, 404, 584, 812
MluCI AATT 8 cut(s) 405, 409, 444, 477, 736, 823, 869, 888
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 7 cut(s) 12, 91, 117, 173, 464, 505, 623
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 8 cut(s) 104, 150, 270, 318, 386, 408, 483, 509
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 2 cut(s) 723, 864
MspR9I CCNGG 3 cut(s) 342, 723, 750
Mva1269I GAATGC 2 cut(s) 401, 694
MvaI CCWGG 2 cut(s) 342, 750
MwoI GCNNNNNNNGC 7 cut(s) 168, 206, 329, 332, 689, 836, 864
NciI CCSGG 1 cut(s) 723
NdeII GATC 2 cut(s) 38, 526
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 694
NspV TTCGAA 1 cut(s) 60
PctI GAATGC 2 cut(s) 401, 694
PfeI GAWTC 6 cut(s) 8, 51, 57, 90, 467, 703
PkrI GCNGC 6 cut(s) 325, 334, 682, 785, 811, 846
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 340, 748
PspGI CCWGG 2 cut(s) 340, 748
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 2 cut(s) 127, 857
PstI CTGCAG 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 550, 719
RsaNI GTAC 2 cut(s) 549, 718
SaqAI TTAA 8 cut(s) 104, 150, 270, 318, 386, 408, 483, 509
SatI GCNGC 6 cut(s) 324, 333, 681, 784, 810, 845
Sau3AI GATC 2 cut(s) 38, 526
Sau96I GGNCC 2 cut(s) 127, 857
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 342, 723, 750
SfcI CTRYAG 2 cut(s) 294, 324
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 864
SfuI TTCGAA 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
Sse9I AATT 8 cut(s) 405, 409, 444, 477, 736, 823, 869, 888
SsiI CCGC 1 cut(s) 783
SspI AATATT 1 cut(s) 591
SspMI CTAG 3 cut(s) 111, 210, 707
StyD4I CCNGG 3 cut(s) 340, 721, 748
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 60, 258, 529
TaqII GACCGA 1 cut(s) 870
TasI AATT 8 cut(s) 405, 409, 444, 477, 736, 823, 869, 888
TatI WGTACW 1 cut(s) 548
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 6 cut(s) 8, 51, 57, 90, 467, 703
Tru1I TTAA 8 cut(s) 104, 150, 270, 318, 386, 408, 483, 509
Tru9I TTAA 8 cut(s) 104, 150, 270, 318, 386, 408, 483, 509
TscAI CASTG 3 cut(s) 100, 846, 856
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 5 cut(s) 323, 332, 680, 809, 844
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 223, 480, 600, 701
TspRI CASTG 3 cut(s) 100, 846, 856
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 1 cut(s) 823
XspI CTAG 3 cut(s) 111, 210, 707
ZrmI AGTACT 1 cut(s) 550
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.