MD01G1052700.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000170
Physical Location & Seq
Forward (+)
15793894 .. 15796087
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1052700.v1.1.491

Sequence Viewer

Length: 888 bp
ATGGCGGACACAGTAAAGAGGTATGCAGTTGTGACAGGAGCTAACAAGGGGATTGGATTTGGCACAGTTAAGCAGTTGGCTTCAAACGGCATCGTAGTTGTGTTGACTGCTAGAGATGAGAAGAGGGGTCTTGAAGCTCTTGAAAAACTGAAAGATTTTGGCATTTCTGATCTCGTTGTTTTTCATCAGCTTGATGTAACAGATTCTGTTAGTGCTGCTAGATTGGCGGACTTTGTCAAAACCCAATTCGGGAAACTCGATATCTTGGTAAACAATGCAGCAGTTGTTGGAAGCATAGTAACCCCTGAAGATTTCAAATCAGCTTCAAGTGGTAAGAGGCCTGAAGAAATCAATTGGAGTGAAATACCGACCATACCAAACGACGAGGTAGCGGAACAATGCCTGAAGACAAACTACTATGGTACCAAAAGTGTGACTGAAGCGCTTTTGCCCCTCCTCCAGCTATCTGATTCTCCAAGAATCGTGAATGTTTCTTCCGGTGTTGGTAAACTAATGAATTTTCCAAATGGATGGGCTAAAGAGGTACTGAGTGATGCCGAGAGACTTACAGAAGAGAAGATAGATTCTGTGTTGATTAGATTTTTGGAAGACTTCAAAAAAGGAGACACCAAAATCTGGTCTCCTATTTTTCCACCCTATACAGTCTCGAAAGCAGCATTGAACGCATACACCAGGATTCTGGCCAAGAAGTATCCGAATTTCTGCATCAATTGTGTGAGCCCTGGATTTGTCAAAACAGATATAACCTTCAATGTTGGCATCTTAACCATCGACGAAGGTGCTGAAAGCCTTGTCAGGTTGGGGCTACTTCCCAACGGCGGTCCTACTGGTCTCTACTTTGGTCAGAAAGAAGTCGCTTCGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

296

Amino Acids

32.08

Weight (kDa)

5.68

Isoelectric Point (pI)

22.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 171 1e-25 short chain dehydrogenase
adh_short_C2 PF13561 13 - 98 7.2e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 636
AciI CCGC 4 cut(s) 5, 227, 392, 840
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 2 cut(s) 517, 718
AcuI CTGAAG 4 cut(s) 327, 363, 425, 459
AfaI GTAC 2 cut(s) 424, 546
AfeI AGCGCT 1 cut(s) 444
AfiI CCNNNNNNNGG 3 cut(s) 249, 636, 839
AgsI TTSAA 8 cut(s) 84, 134, 143, 316, 327, 616, 682, 772
AjnI CCWGG 2 cut(s) 692, 742
AluBI AGCT 5 cut(s) 41, 137, 190, 323, 463
AluI AGCT 5 cut(s) 41, 137, 190, 323, 463
Alw26I GTCTC 5 cut(s) 556, 618, 645, 670, 857
AlwNI CAGNNNCTG 1 cut(s) 206
Aor51HI AGCGCT 1 cut(s) 444
AoxI GGCC 2 cut(s) 338, 702
ApeKI GCWGC 3 cut(s) 215, 278, 674
ApoI RAATTY 2 cut(s) 517, 718
Asp718I GGTACC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 842
AvaII GGWCC 1 cut(s) 842
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BalI TGGCCA 1 cut(s) 704
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 743
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbsI GAAGAC 2 cut(s) 413, 615
BbvI GCAGC 3 cut(s) 202, 290, 686
BccI CCATC 2 cut(s) 525, 797
BceAI ACGGC 2 cut(s) 103, 853
BcgI CGANNNNNNTGC 2 cut(s) 782, 816
BciT130I CCWGG 2 cut(s) 694, 744
BciVI GTATCC 1 cut(s) 723
BcoDI GTCTC 5 cut(s) 556, 618, 645, 670, 857
BfaI CTAG 2 cut(s) 111, 219
BfoI RGCGCY 1 cut(s) 446
BfuI GTATCC 1 cut(s) 723
BisI GCNGC 3 cut(s) 216, 279, 675
BlsI GCNGC 3 cut(s) 217, 280, 676
Bme1390I CCNGG 2 cut(s) 694, 744
Bme18I GGWCC 1 cut(s) 842
BmgT120I GGNCC 1 cut(s) 842
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 2 cut(s) 694, 744
BmsI GCATC 4 cut(s) 99, 544, 735, 789
BpiI GAAGAC 2 cut(s) 413, 615
BpmI CTGGAG 1 cut(s) 443
BsaI GGTCTC 2 cut(s) 645, 857
BsaJI CCNNGG 1 cut(s) 742
BsaWI WCCGGW 1 cut(s) 497
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 636, 839
Bse1I ACTGG 1 cut(s) 853
BseBI CCWGG 2 cut(s) 694, 744
BseDI CCNNGG 1 cut(s) 742
BseGI GGATG 1 cut(s) 536
BseLI CCNNNNNNNGG 3 cut(s) 249, 636, 839
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 1 cut(s) 853
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 3 cut(s) 202, 290, 686
BshFI GGCC 2 cut(s) 340, 704
BshNI GGYRCC 1 cut(s) 422
BsiSI CCGG 1 cut(s) 498
BslI CCNNNNNNNGG 3 cut(s) 249, 636, 839
BsmAI GTCTC 5 cut(s) 556, 618, 645, 670, 857
BsnI GGCC 2 cut(s) 340, 704
Bso31I GGTCTC 2 cut(s) 645, 857
Bsp1286I GDGCHC 1 cut(s) 743
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 4 cut(s) 5, 227, 392, 840
BspANI GGCC 2 cut(s) 340, 704
BspCNI CTCAG 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 422
BspTNI GGTCTC 2 cut(s) 645, 857
BsrI ACTGG 1 cut(s) 853
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 694, 744
Bst4CI ACNGT 3 cut(s) 13, 67, 664
Bst6I CTCTTC 2 cut(s) 116, 567
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 1 cut(s) 536
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 5 cut(s) 556, 618, 645, 670, 857
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 224, 683
BstNI CCWGG 2 cut(s) 694, 744
BstSCI CCNGG 2 cut(s) 692, 742
BstV1I GCAGC 3 cut(s) 202, 290, 686
BstV2I GAAGAC 2 cut(s) 413, 615
BstXI CCANNNNNNTGG 2 cut(s) 531, 700
BsuI GTATCC 1 cut(s) 723
BsuRI GGCC 2 cut(s) 340, 704
BtsCI GGATG 1 cut(s) 536
CaiI CAGNNNCTG 1 cut(s) 206
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 842
Csp6I GTAC 2 cut(s) 423, 545
CviQI GTAC 2 cut(s) 423, 545
DdeI CTNAG 1 cut(s) 548
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 702
Eam1104I CTCTTC 2 cut(s) 116, 567
EarI CTCTTC 2 cut(s) 116, 567
EciI GGCGGA 2 cut(s) 20, 242
Eco147I AGGCCT 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 743
Eco31I GGTCTC 2 cut(s) 645, 857
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 842
Eco47III AGCGCT 1 cut(s) 444
Eco57I CTGAAG 4 cut(s) 327, 363, 425, 459
EcoRII CCWGG 2 cut(s) 692, 742
EcoRV GATATC 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 743
FaiI YATR 7 cut(s) 24, 296, 374, 420, 660, 688, 764
Fnu4HI GCNGC 3 cut(s) 216, 279, 675
FokI GGATG 1 cut(s) 543
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 3 cut(s) 216, 279, 675
FspBI CTAG 2 cut(s) 111, 219
GlaI GCGC 1 cut(s) 444
GluI GCNGC 3 cut(s) 216, 279, 675
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 2 cut(s) 340, 704
HapII CCGG 1 cut(s) 498
HhaI GCGC 1 cut(s) 445
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 5 cut(s) 203, 470, 480, 584, 697
HpaII CCGG 1 cut(s) 498
Hpy166II GTNNAC 3 cut(s) 105, 271, 509
Hpy188I TCNGA 5 cut(s) 169, 469, 717, 867, 887
Hpy188III TCNNGA 5 cut(s) 131, 140, 250, 484, 667
Hpy8I GTNNAC 3 cut(s) 105, 271, 509
Hpy99I CGWCG 2 cut(s) 386, 797
HpyAV CCTTC 2 cut(s) 778, 791
HpyCH4III ACNGT 3 cut(s) 13, 67, 664
HpyCH4V TGCA 3 cut(s) 26, 278, 726
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 683
HpyF3I CTNAG 1 cut(s) 548
HspAI GCGC 1 cut(s) 443
KpnI GGTACC 1 cut(s) 426
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 3 cut(s) 202, 290, 686
LweI GCATC 4 cut(s) 99, 544, 735, 789
MaeI CTAG 2 cut(s) 111, 219
MaeIII GTNAC 4 cut(s) 31, 196, 298, 433
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 8 cut(s) 133, 320, 356, 418, 486, 584, 589, 620
MfeI CAATTG 2 cut(s) 352, 730
MhlI GDGCHC 1 cut(s) 743
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 5 cut(s) 245, 352, 517, 718, 730
MluNI TGGCCA 1 cut(s) 704
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 7 cut(s) 12, 117, 330, 379, 464, 467, 535
Mox20I TGGCCA 1 cut(s) 704
MscI TGGCCA 1 cut(s) 704
MseI TTAA 2 cut(s) 69, 785
Msp20I TGGCCA 1 cut(s) 704
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 2 cut(s) 694, 744
MunI CAATTG 2 cut(s) 352, 730
MvaI CCWGG 2 cut(s) 694, 744
MwoI GCNNNNNNNGC 2 cut(s) 224, 683
NdeII GATC 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 424
NmeAIII GCCGAG 1 cut(s) 583
NmuCI GTSAC 2 cut(s) 31, 433
PceI AGGCCT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 5 cut(s) 203, 470, 480, 584, 697
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 636
PkrI GCNGC 3 cut(s) 217, 280, 676
Psp6I CCWGG 2 cut(s) 692, 742
PspGI CCWGG 2 cut(s) 692, 742
PspN4I GGNNCC 1 cut(s) 424
PspPI GGNCC 1 cut(s) 842
PstNI CAGNNNCTG 1 cut(s) 206
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 2 cut(s) 424, 546
RsaNI GTAC 2 cut(s) 423, 545
SaqAI TTAA 2 cut(s) 69, 785
SatI GCNGC 3 cut(s) 216, 279, 675
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 842
ScrFI CCNGG 2 cut(s) 694, 744
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 4 cut(s) 99, 544, 735, 789
SinI GGWCC 1 cut(s) 842
Sse9I AATT 5 cut(s) 245, 352, 517, 718, 730
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 4 cut(s) 5, 227, 392, 840
SspMI CTAG 2 cut(s) 111, 219
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 2 cut(s) 692, 742
TaaI ACNGT 3 cut(s) 13, 67, 664
TaqI TCGA 3 cut(s) 258, 668, 792
TasI AATT 5 cut(s) 245, 352, 517, 718, 730
TfiI GAWTC 5 cut(s) 203, 470, 480, 584, 697
Tru1I TTAA 2 cut(s) 69, 785
Tru9I TTAA 2 cut(s) 69, 785
TseFI GTSAC 2 cut(s) 31, 433
TseI GCWGC 3 cut(s) 215, 278, 674
Tsp45I GTSAC 2 cut(s) 31, 433
TspDTI ATGAA 2 cut(s) 173, 530
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 636
VpaK11BI GGWCC 1 cut(s) 842
XapI RAATTY 2 cut(s) 517, 718
XspI CTAG 2 cut(s) 111, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.