Prupe.2G160400_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000170
Physical Location & Seq
Forward (+)
21236992 .. 21239622
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G160400.1

Sequence Viewer

Length: 897 bp
ATGGCAGAAGCAACAAAGAGGTATGCAGTTGTTACTGGAGCAAACAAAGGCATGGGATTGGAAACTGTAAGGCAGTTGGCCTCAAATGGGTTCACCGTAGTCTTAACTGCCCGAGATGAGAAGAGGGGTCTTGAAGCTGTTGAGAAACTCAAAGAGTCTGGCCTCTCAGGTCAAGTGGTTTTTCATCAACTTGATGTGGCTAACCCTGCTACTGTTGCTTCTTTGGCAGACTTCATCAAAACCCAGTTTGGGAAACTCGATATCTTGGTGAACAATGCAGGGATTTATGGAAGCATATTAGACGGTGATGCTTTTAAAGCTGTTATAGCCTCTGGTGCCATGGAAAGAGGAGAAGTTGATTTGAGTAAACTAGTGACTGAAACTTATGAGTTTGCAGAAGAATGCTTGCAAATAAACTATTATGGTGCTAAAAGAACAGCTGAAGCACTTATCCCACTCCTCCAGTTATCTGACTCACCGAGAATTGTTAATGTTTCGTCTGGTGCGGGGAAGTTAAACAACATACCAAGCGATTGGGCTAAAGGAGTTTTTACTGATGCCAAAAACCTAACAGAAGAGAGAGTAGATGAGGTACTGACTGAGTTTCTAAAAGATTTCAAGGAGGGTTCACTTGAAAGTAAAGGCTGGCCTTCTTCTATGCCTGCCTATACAGTCTCAAAAGCAGCACTGAACGCATATACAAGGATTCTAGCAAAGAAGTACCTCAATTTTCGTATCAATTCGGTCTGCCCTGGCTTTGTCAAAACAGATATAAACTGCAATGCCGGCGTCTTGCCTGTCGAAGAAGGTGGGGCCAGGATTGTGAAGTTAGCATTGCTGCCCAGTGATGGCCCTACTGGCTCCTTCTTTGTTCACAATGAAGTGTCAGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

299

Amino Acids

32.09

Weight (kDa)

5.32

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AciI CCGC 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 789
AfaI GTAC 2 cut(s) 594, 722
AfiI CCNNNNNNNGG 3 cut(s) 87, 249, 848
AgsI TTSAA 3 cut(s) 134, 619, 635
AhlI ACTAGT 1 cut(s) 370
AjnI CCWGG 2 cut(s) 751, 815
AluBI AGCT 3 cut(s) 137, 320, 440
AluI AGCT 3 cut(s) 137, 320, 440
Alw26I GTCTC 1 cut(s) 679
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 5 cut(s) 78, 160, 647, 813, 850
ApeKI GCWGC 2 cut(s) 683, 838
AspS9I GGNCC 2 cut(s) 813, 851
AsuHPI GGTGA 4 cut(s) 85, 280, 317, 468
AvaI CYCGRG 1 cut(s) 111
BanI GGYRCC 1 cut(s) 335
BbvI GCAGC 2 cut(s) 695, 825
BccI CCATC 1 cut(s) 842
BciT130I CCWGG 2 cut(s) 753, 817
BcoDI GTCTC 1 cut(s) 679
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 2 cut(s) 371, 710
BglI GCCNNNNNGGC 1 cut(s) 858
BglII AGATCT 1 cut(s) 889
BisI GCNGC 2 cut(s) 684, 839
BlsI GCNGC 2 cut(s) 685, 840
Bme1390I CCNGG 2 cut(s) 753, 817
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 813, 851
BmiI GGNNCC 3 cut(s) 337, 814, 862
BmrFI CCNGG 2 cut(s) 753, 817
BmrI ACTGGG 2 cut(s) 238, 837
BmsI GCATC 2 cut(s) 298, 547
BmuI ACTGGG 2 cut(s) 238, 837
BpmI CTGGAG 2 cut(s) 57, 446
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 2 cut(s) 339, 751
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 249, 848
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 5 cut(s) 40, 244, 463, 843, 862
Bse3DI GCAATG 2 cut(s) 787, 833
BseBI CCWGG 2 cut(s) 753, 817
BseDI CCNNGG 2 cut(s) 339, 751
BseLI CCNNNNNNNGG 3 cut(s) 87, 249, 848
BseMI GCAATG 2 cut(s) 787, 833
BseMII CTCAG 2 cut(s) 180, 591
BseNI ACTGG 5 cut(s) 40, 244, 463, 843, 862
BseRI GAGGAG 2 cut(s) 363, 449
BseXI GCAGC 2 cut(s) 695, 825
BshFI GGCC 5 cut(s) 80, 162, 649, 815, 852
BshNI GGYRCC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 786
BslI CCNNNNNNNGG 3 cut(s) 87, 249, 848
BsmAI GTCTC 1 cut(s) 679
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 5 cut(s) 80, 162, 649, 815, 852
BsoBI CYCGRG 1 cut(s) 111
Bsp143I GATC 1 cut(s) 889
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 1 cut(s) 506
BspANI GGCC 5 cut(s) 80, 162, 649, 815, 852
BspCNI CTCAG 2 cut(s) 179, 592
BspLI GGNNCC 3 cut(s) 337, 814, 862
BspT107I GGYRCC 1 cut(s) 335
BsrDI GCAATG 2 cut(s) 787, 833
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 5 cut(s) 40, 244, 463, 843, 862
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 2 cut(s) 339, 751
BssMI GATC 1 cut(s) 889
BssNI GRCGYC 1 cut(s) 789
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 753, 817
Bst4CI ACNGT 5 cut(s) 67, 97, 214, 305, 673
Bst6I CTCTTC 2 cut(s) 116, 570
BstACI GRCGYC 1 cut(s) 789
BstC8I GCNNGC 4 cut(s) 407, 647, 663, 787
BstDEI CTNAG 2 cut(s) 166, 600
BstDSI CCRYGG 1 cut(s) 339
BstKTI GATC 1 cut(s) 892
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 1 cut(s) 889
BstMWI GCNNNNNNNGC 9 cut(s) 206, 215, 224, 317, 326, 335, 692, 786, 858
BstNI CCWGG 2 cut(s) 753, 817
BstSCI CCNGG 2 cut(s) 751, 815
BstV1I GCAGC 2 cut(s) 695, 825
BstX2I RGATCY 1 cut(s) 889
BstXI CCANNNNNNTGG 1 cut(s) 534
BstYI RGATCY 1 cut(s) 889
BsuRI GGCC 5 cut(s) 80, 162, 649, 815, 852
BtgI CCRYGG 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 686, 850
Cac8I GCNNGC 4 cut(s) 407, 647, 663, 787
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 2 cut(s) 813, 851
CseI GACGC 1 cut(s) 778
Csp6I GTAC 2 cut(s) 593, 721
CviAII CATG 2 cut(s) 52, 340
CviQI GTAC 2 cut(s) 593, 721
DdeI CTNAG 2 cut(s) 166, 600
DpnI GATC 1 cut(s) 891
DpnII GATC 1 cut(s) 889
DraI TTTAAA 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 116, 570
EarI CTCTTC 2 cut(s) 116, 570
Eco130I CCWWGG 1 cut(s) 339
Eco32I GATATC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 751, 815
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 2 cut(s) 55, 343
FatI CATG 2 cut(s) 51, 339
FauI CCCGC 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 684, 839
Fsp4HI GCNGC 2 cut(s) 684, 839
FspBI CTAG 2 cut(s) 371, 710
GluI GCNGC 2 cut(s) 684, 839
GsuI CTGGAG 2 cut(s) 57, 446
HaeIII GGCC 5 cut(s) 80, 162, 649, 815, 852
HapII CCGG 1 cut(s) 786
HgaI GACGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 2 cut(s) 55, 343
HinfI GANTC 3 cut(s) 155, 473, 706
HpaII CCGG 1 cut(s) 786
HphI GGTGA 4 cut(s) 85, 280, 317, 468
Hpy166II GTNNAC 5 cut(s) 93, 271, 368, 629, 874
Hpy188I TCNGA 2 cut(s) 472, 889
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 5 cut(s) 93, 271, 368, 629, 874
HpyAV CCTTC 3 cut(s) 660, 800, 874
HpyCH4III ACNGT 5 cut(s) 67, 97, 214, 305, 673
HpyCH4V TGCA 5 cut(s) 26, 278, 395, 409, 780
HpyF10VI GCNNNNNNNGC 9 cut(s) 206, 215, 224, 317, 326, 335, 692, 786, 858
HpyF3I CTNAG 2 cut(s) 166, 600
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 2 cut(s) 55, 343
KroI GCCGGC 1 cut(s) 785
KroNI GCCGGC 1 cut(s) 787
Kzo9I GATC 1 cut(s) 889
LmnI GCTCC 2 cut(s) 38, 866
Lsp1109I GCAGC 2 cut(s) 695, 825
LweI GCATC 2 cut(s) 298, 547
MaeI CTAG 2 cut(s) 371, 710
MaeIII GTNAC 2 cut(s) 31, 373
MalI GATC 1 cut(s) 891
MboI GATC 1 cut(s) 889
MboII GAAGA 5 cut(s) 133, 410, 587, 645, 815
MflI RGATCY 1 cut(s) 889
MluCI AATT 3 cut(s) 483, 727, 739
MlyI GAGTC 2 cut(s) 164, 467
MroNI GCCGGC 1 cut(s) 785
MseI TTAA 4 cut(s) 104, 315, 489, 515
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 2 cut(s) 753, 817
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 2 cut(s) 753, 817
MwoI GCNNNNNNNGC 9 cut(s) 206, 215, 224, 317, 326, 335, 692, 786, 858
NaeI GCCGGC 1 cut(s) 787
NcoI CCATGG 1 cut(s) 339
NdeII GATC 1 cut(s) 889
NgoMIV GCCGGC 1 cut(s) 785
NlaIII CATG 2 cut(s) 55, 343
NlaIV GGNNCC 3 cut(s) 337, 814, 862
NmuCI GTSAC 1 cut(s) 373
PctI GAATGC 1 cut(s) 407
PdiI GCCGGC 1 cut(s) 787
PfeI GAWTC 1 cut(s) 706
PkrI GCNGC 2 cut(s) 685, 840
PleI GAGTC 2 cut(s) 163, 467
PpsI GAGTC 2 cut(s) 163, 467
Psp6I CCWGG 2 cut(s) 751, 815
PspGI CCWGG 2 cut(s) 751, 815
PspN4I GGNNCC 3 cut(s) 337, 814, 862
PspPI GGNCC 2 cut(s) 813, 851
PsuI RGATCY 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 594, 722
RsaNI GTAC 2 cut(s) 593, 721
SaqAI TTAA 4 cut(s) 104, 315, 489, 515
SatI GCNGC 2 cut(s) 684, 839
Sau3AI GATC 1 cut(s) 889
Sau96I GGNCC 2 cut(s) 813, 851
SchI GAGTC 2 cut(s) 164, 467
ScrFI CCNGG 2 cut(s) 753, 817
SetI ASST 9 cut(s) 23, 139, 172, 322, 442, 570, 594, 726, 811
SfaNI GCATC 2 cut(s) 298, 547
SpeI ACTAGT 1 cut(s) 370
Sse9I AATT 3 cut(s) 483, 727, 739
SsiI CCGC 1 cut(s) 506
SspMI CTAG 2 cut(s) 371, 710
StyD4I CCNGG 2 cut(s) 751, 815
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 5 cut(s) 67, 97, 214, 305, 673
TaqI TCGA 2 cut(s) 258, 801
TaqII GACCGA 1 cut(s) 733
TasI AATT 3 cut(s) 483, 727, 739
TfiI GAWTC 1 cut(s) 706
Tru1I TTAA 4 cut(s) 104, 315, 489, 515
Tru9I TTAA 4 cut(s) 104, 315, 489, 515
TscAI CASTG 2 cut(s) 693, 850
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 2 cut(s) 683, 838
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 173, 223, 894
TspRI CASTG 2 cut(s) 693, 850
XspI CTAG 2 cut(s) 371, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.