Rmu_sc0005914.1_g000007

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005914.1
OG0000170
Physical Location & Seq
Reverse (-)
29114 .. 30240
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005914.1_g000007.1.cds

Sequence Viewer

Length: 777 bp
atgtctagtgtgacttgctgtttgaggttccctgggcaactcaactctgacctcagaaagttggctgtcaatctcattccattcccccgtctccactttttcattccattcctggtgggatgttttaatgcagaaaaagttgatatgcatgatcttcaggtgaacaatgcagggattggtggatccataattgatgctgatggtgctaaagatgcagttgcagctggaggacaaattgattggcaaaaactggtgacagaaacttatgaattaacagaagaatgcttgcaaatcaattattatggagctaaaagaacatccgaagcacttattccactccttgagctatctgattcaccaagaattgttaatgtttcatcctctatgggaaagttaaagaacatgccaagtgatagggtaaaagaaatttttactgatgtagagaacctgagggaagagagtgtagatgaagtattgacagagtttcttaaggactacaaggagggttcacttgaaagcaagggctggccttcttctatgtcaggctatacagtttccaaaacagcactaaatgcatatacaaggattctagccaagaagtaccccggttttcgtgtcaactgtgtctgccccggctatgtcaaaacagatttgaacttcaatgccggtgtcgtgcctgttgaagaaggtgctgcaaattctgtgaggttagcactgctgcccagtgatggcccttctggcaaattctttgttcggtctgaagttagcatctactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

258

Amino Acids

28.37

Weight (kDa)

5.25

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 177, 190
AcsI RAATTY 3 cut(s) 426, 697, 743
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 1 cut(s) 728
AflII CTTAAG 1 cut(s) 488
AgsI TTSAA 4 cut(s) 515, 655, 661, 683
AjnI CCWGG 2 cut(s) 31, 111
AluBI AGCT 3 cut(s) 224, 308, 346
AluI AGCT 3 cut(s) 224, 308, 346
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 177, 190
AoxI GGCC 2 cut(s) 527, 730
ApeKI GCWGC 3 cut(s) 221, 692, 718
ApoI RAATTY 3 cut(s) 426, 697, 743
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 2 cut(s) 606, 633
AsuHPI GGTGA 3 cut(s) 172, 265, 348
AxyI CCTNAGG 1 cut(s) 449
BamHI GGATCC 1 cut(s) 182
BbvI GCAGC 3 cut(s) 233, 679, 705
BccI CCATC 2 cut(s) 194, 722
BciT130I CCWGG 2 cut(s) 33, 113
BcnI CCSGG 2 cut(s) 606, 633
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 6, 590
BfrI CTTAAG 1 cut(s) 488
BglI GCCNNNNNGGC 1 cut(s) 738
BisI GCNGC 3 cut(s) 222, 693, 719
BlsI GCNGC 3 cut(s) 223, 694, 720
Bme1390I CCNGG 4 cut(s) 33, 113, 606, 633
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 2 cut(s) 29, 184
BmrFI CCNGG 4 cut(s) 33, 113, 606, 633
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 2 cut(s) 184, 202
BmuI ACTGGG 1 cut(s) 717
BpmI CTGGAG 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 606, 633
BsaJI CCNNGG 4 cut(s) 31, 32, 604, 631
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse118I RCCGGY 1 cut(s) 665
Bse1I ACTGG 2 cut(s) 255, 723
Bse21I CCTNAGG 1 cut(s) 449
BseBI CCWGG 2 cut(s) 33, 113
BseDI CCNNGG 4 cut(s) 31, 32, 604, 631
BseGI GGATG 3 cut(s) 125, 317, 377
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 67, 440
BseNI ACTGG 2 cut(s) 255, 723
BseXI GCAGC 3 cut(s) 233, 679, 705
BshFI GGCC 2 cut(s) 529, 732
BsiSI CCGG 3 cut(s) 606, 633, 666
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 2 cut(s) 529, 732
Bsp143I GATC 2 cut(s) 151, 182
BspANI GGCC 2 cut(s) 529, 732
BspCNI CTCAG 2 cut(s) 66, 441
BspLI GGNNCC 2 cut(s) 29, 184
BspPI GGATC 2 cut(s) 177, 190
BspTI CTTAAG 1 cut(s) 488
BsrFI RCCGGY 1 cut(s) 665
BsrI ACTGG 2 cut(s) 255, 723
BssAI RCCGGY 1 cut(s) 665
BssECI CCNNGG 4 cut(s) 31, 32, 604, 631
BssMI GATC 2 cut(s) 151, 182
Bst2UI CCWGG 2 cut(s) 33, 113
Bst4CI ACNGT 2 cut(s) 553, 623
Bst6I CTCTTC 1 cut(s) 450
BstAFI CTTAAG 1 cut(s) 488
BstAPI GCANNNNNTGC 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 287, 527
BstDEI CTNAG 2 cut(s) 53, 449
BstF5I GGATG 3 cut(s) 125, 317, 377
BstKTI GATC 2 cut(s) 154, 185
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 151, 182
BstMWI GCNNNNNNNGC 5 cut(s) 203, 212, 221, 572, 738
BstNI CCWGG 2 cut(s) 33, 113
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 4 cut(s) 31, 111, 604, 631
BstV1I GCAGC 3 cut(s) 233, 679, 705
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
Bsu36I CCTNAGG 1 cut(s) 449
BsuRI GGCC 2 cut(s) 529, 732
BtsCI GGATG 3 cut(s) 125, 317, 377
BtsI GCAGTG 1 cut(s) 713
BtsIMutI CAGTG 2 cut(s) 713, 730
Cac8I GCNNGC 2 cut(s) 287, 527
Cfr10I RCCGGY 1 cut(s) 665
Cfr13I GGNCC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 601
CviAII CATG 2 cut(s) 149, 403
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 2 cut(s) 53, 449
DpnI GATC 2 cut(s) 153, 184
DpnII GATC 2 cut(s) 151, 182
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 449
EcoRII CCWGG 2 cut(s) 31, 111
EcoT22I ATGCAT 2 cut(s) 150, 577
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 2 cut(s) 152, 406
FatI CATG 2 cut(s) 148, 402
Fnu4HI GCNGC 3 cut(s) 222, 693, 719
FokI GGATG 3 cut(s) 132, 304, 364
Fsp4HI GCNGC 3 cut(s) 222, 693, 719
FspBI CTAG 2 cut(s) 6, 590
GluI GCNGC 3 cut(s) 222, 693, 719
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 2 cut(s) 529, 732
HapII CCGG 3 cut(s) 606, 633, 666
Hin1II CATG 2 cut(s) 152, 406
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 2 cut(s) 353, 586
HpaII CCGG 3 cut(s) 606, 633, 666
HphI GGTGA 3 cut(s) 172, 265, 348
Hpy166II GTNNAC 3 cut(s) 163, 509, 619
Hpy188I TCNGA 5 cut(s) 49, 56, 322, 352, 760
Hpy8I GTNNAC 3 cut(s) 163, 509, 619
HpyAV CCTTC 3 cut(s) 540, 680, 744
HpyCH4III ACNGT 2 cut(s) 553, 623
HpyCH4V TGCA 8 cut(s) 131, 148, 170, 215, 221, 289, 575, 695
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 212, 221, 572, 738
HpyF3I CTNAG 2 cut(s) 53, 449
Hsp92II CATG 2 cut(s) 152, 406
Kzo9I GATC 2 cut(s) 151, 182
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 3 cut(s) 233, 679, 705
LweI GCATC 2 cut(s) 184, 202
MaeI CTAG 2 cut(s) 6, 590
MaeIII GTNAC 2 cut(s) 10, 253
MalI GATC 2 cut(s) 153, 184
MboI GATC 2 cut(s) 151, 182
MboII GAAGA 5 cut(s) 146, 290, 467, 525, 695
MflI RGATCY 1 cut(s) 182
MluCI AATT 8 cut(s) 189, 234, 269, 295, 363, 426, 697, 743
MnlI CCTC 7 cut(s) 18, 62, 221, 391, 444, 496, 699
Mph1103I ATGCAT 2 cut(s) 150, 577
MseI TTAA 5 cut(s) 126, 272, 369, 395, 489
MspA1I CMGCKG 1 cut(s) 224
MspCI CTTAAG 1 cut(s) 488
MspI CCGG 3 cut(s) 606, 633, 666
MspR9I CCNGG 4 cut(s) 33, 113, 606, 633
Mva1269I GAATGC 1 cut(s) 287
MvaI CCWGG 2 cut(s) 33, 113
MwoI GCNNNNNNNGC 5 cut(s) 203, 212, 221, 572, 738
NciI CCSGG 2 cut(s) 606, 633
NdeII GATC 2 cut(s) 151, 182
NlaIII CATG 2 cut(s) 152, 406
NlaIV GGNNCC 2 cut(s) 29, 184
NmuCI GTSAC 2 cut(s) 10, 253
NsiI ATGCAT 2 cut(s) 150, 577
NspI RCATGY 1 cut(s) 406
PasI CCCWGGG 1 cut(s) 32
PctI GAATGC 1 cut(s) 287
PfeI GAWTC 2 cut(s) 353, 586
PkrI GCNGC 3 cut(s) 223, 694, 720
Psp6I CCWGG 2 cut(s) 31, 111
PspGI CCWGG 2 cut(s) 31, 111
PspN4I GGNNCC 2 cut(s) 29, 184
PspPI GGNCC 1 cut(s) 731
PsuI RGATCY 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SaqAI TTAA 5 cut(s) 126, 272, 369, 395, 489
SatI GCNGC 3 cut(s) 222, 693, 719
Sau3AI GATC 2 cut(s) 151, 182
Sau96I GGNCC 1 cut(s) 731
ScrFI CCNGG 4 cut(s) 33, 113, 606, 633
SetI ASST 9 cut(s) 29, 54, 162, 226, 310, 348, 450, 691, 710
SfaNI GCATC 2 cut(s) 184, 202
SmlI CTYRAG 2 cut(s) 341, 488
SmoI CTYRAG 2 cut(s) 341, 488
Sse9I AATT 8 cut(s) 189, 234, 269, 295, 363, 426, 697, 743
SspMI CTAG 2 cut(s) 6, 590
StyD4I CCNGG 4 cut(s) 31, 111, 604, 631
TaaI ACNGT 2 cut(s) 553, 623
TaqII GACCGA 1 cut(s) 744
TasI AATT 8 cut(s) 189, 234, 269, 295, 363, 426, 697, 743
TfiI GAWTC 2 cut(s) 353, 586
Tru1I TTAA 5 cut(s) 126, 272, 369, 395, 489
Tru9I TTAA 5 cut(s) 126, 272, 369, 395, 489
TscAI CASTG 2 cut(s) 720, 730
TseFI GTSAC 2 cut(s) 10, 253
TseI GCWGC 3 cut(s) 221, 692, 718
Tsp45I GTSAC 2 cut(s) 10, 253
TspDTI ATGAA 4 cut(s) 91, 282, 366, 483
TspRI CASTG 2 cut(s) 720, 730
Vha464I CTTAAG 1 cut(s) 488
XapI RAATTY 3 cut(s) 426, 697, 743
XceI RCATGY 1 cut(s) 406
XspI CTAG 2 cut(s) 6, 590
Zsp2I ATGCAT 2 cut(s) 150, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.