Rroxscaffold_4G00301760

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000170
Physical Location & Seq
Reverse (-)
22086805 .. 22089176
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301760.1

Sequence Viewer

Length: 810 bp
ATGACAGTGTTAACAGCTTTAGATGAGAAGAAGGGCATTGAAGCGGTTGAAGAATTAAAAGACTCCGGCCTCTCTGACCTTGTTGTTTATCATCAGCTTGATGTAACAGACCCTGTTAGCATTTCTTCCCTTGCAGATTTTGTCAAAACCCGATTTGGGAAACTGGATATCTTGGTTAACAATGCAGGTGTTAGTGGAACCATTTCAGATCCTGACGCTTTCAGAAATGCTGTTGCAGCCGCAGGTAGGGCTAAGGATGGTGGAGGAGTCAATTGGAGTGAACTAATGACCCAAACATACGATCTAGCTGAAGTGTGTGTGGAAACAAACTACTATGGTGCAAGAAAAGTTACCAAAGCACTCCTTCCTCTCCTCCTTCTATCTAATTCACCAAGAATTGTCAATCTTACTTCTCGCATGGGGACATTAAAGCATATACCAAATGAATGGGCCAAAGCGGTGTTAAGTGATGCCGAAAACGTTACAGAAGAGAAAGTAGAGGAGGTCTTAAGTGAGTTTCTAAAGGACTTCAAAGAAGATATGCTTGAAACCAAAGGCTGGCCTCCTACCCCTTCTGCCTATACACTCTCAAAGGCAGCCTTGAATGCATACACCAGAATTGTGGCCAAGAAGTGCCCGAAGGTATGCGTCAATTGTGTTGATCCTGGATTTGTTAAAACAGATATGACCTGCAATGCCGGCATCTTATCCATCGATGAGGGTGCTGCAAGTGTTGTGAGGTTGGCAATGACTCCAAATGGCAGTCCTTCAGGTCTATACTTCTATGTACAAGAAGTCTCACCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

269

Amino Acids

29.1

Weight (kDa)

4.96

Isoelectric Point (pI)

23.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 3 - 143 1.7e-13 short chain dehydrogenase
adh_short_C2 PF13561 3 - 67 6e-09 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 185 - 235 3e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
Acc36I ACCTGC 3 cut(s) 176, 233, 698
AccB7I CCANNNNNTGG 1 cut(s) 558
AciI CCGC 3 cut(s) 44, 240, 458
AclI AACGTT 1 cut(s) 480
AclWI GGATC 2 cut(s) 203, 656
AcoI YGGCCR 1 cut(s) 624
AcuI CTGAAG 2 cut(s) 330, 753
AfaI GTAC 1 cut(s) 789
AfiI CCNNNNNNNGG 3 cut(s) 156, 246, 558
AflII CTTAAG 1 cut(s) 508
AgsI TTSAA 5 cut(s) 41, 50, 532, 548, 604
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 3 cut(s) 17, 97, 308
AluI AGCT 3 cut(s) 17, 97, 308
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 2 cut(s) 203, 656
AlwNI CAGNNNCTG 2 cut(s) 113, 212
AoxI GGCC 4 cut(s) 67, 450, 560, 624
ApeKI GCWGC 3 cut(s) 236, 596, 725
Asp700I GAANNNNTTC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 2 cut(s) 381, 792
BaeGI GKGCMC 1 cut(s) 638
BalI TGGCCA 1 cut(s) 626
BbvI GCAGC 3 cut(s) 248, 608, 712
BccI CCATC 2 cut(s) 251, 719
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 1 cut(s) 802
BfaI CTAG 1 cut(s) 305
BfrI CTTAAG 1 cut(s) 508
BfuAI ACCTGC 3 cut(s) 176, 233, 698
BisI GCNGC 4 cut(s) 237, 240, 597, 726
BlsI GCNGC 4 cut(s) 238, 241, 598, 727
Bme1390I CCNGG 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 2 cut(s) 460, 711
Bpu10I CCTNAGC 1 cut(s) 252
Bsa29I ATCGAT 1 cut(s) 714
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 246, 558
Bse118I RCCGGY 1 cut(s) 698
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 2 cut(s) 700, 753
BseBI CCWGG 1 cut(s) 666
BseCI ATCGAT 1 cut(s) 714
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 156, 246, 558
BseMI GCAATG 2 cut(s) 700, 753
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 3 cut(s) 279, 362, 515
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 3 cut(s) 248, 608, 712
BshFI GGCC 4 cut(s) 69, 452, 562, 626
BshVI ATCGAT 1 cut(s) 714
BsiSI CCGG 2 cut(s) 66, 699
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 3 cut(s) 156, 246, 558
BsmAI GTCTC 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 436
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 4 cut(s) 69, 452, 562, 626
Bsp1286I GDGCHC 1 cut(s) 638
Bsp1407I TGTACA 1 cut(s) 787
Bsp143I GATC 3 cut(s) 208, 301, 661
BspACI CCGC 3 cut(s) 44, 240, 458
BspANI GGCC 4 cut(s) 69, 452, 562, 626
BspDI ATCGAT 1 cut(s) 714
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 3 cut(s) 176, 233, 698
BspPI GGATC 2 cut(s) 203, 656
BspTI CTTAAG 1 cut(s) 508
BsrDI GCAATG 2 cut(s) 700, 753
BsrFI RCCGGY 1 cut(s) 698
BsrGI TGTACA 1 cut(s) 787
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 698
BssMI GATC 3 cut(s) 208, 301, 661
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 483
BstAFI CTTAAG 1 cut(s) 508
BstAUI TGTACA 1 cut(s) 787
BstC8I GCNNGC 2 cut(s) 560, 700
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 3 cut(s) 211, 304, 664
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 3 cut(s) 208, 301, 661
BstMWI GCNNNNNNNGC 4 cut(s) 236, 248, 605, 699
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 664
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 3 cut(s) 248, 608, 712
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 2 cut(s) 447, 622
BstYI RGATCY 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 714
BsuRI GGCC 4 cut(s) 69, 452, 562, 626
BsuTUI ATCGAT 1 cut(s) 714
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 3 cut(s) 176, 233, 698
Cac8I GCNNGC 2 cut(s) 560, 700
CaiI CAGNNNCTG 2 cut(s) 113, 212
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 1 cut(s) 450
ClaI ATCGAT 1 cut(s) 714
CseI GACGC 2 cut(s) 224, 637
Csp6I GTAC 1 cut(s) 788
CviAII CATG 1 cut(s) 418
CviQI GTAC 1 cut(s) 788
DdeI CTNAG 1 cut(s) 252
DpnI GATC 3 cut(s) 210, 303, 663
DpnII GATC 3 cut(s) 208, 301, 661
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 169
Eco57I CTGAAG 2 cut(s) 330, 753
EcoRII CCWGG 1 cut(s) 664
EcoRV GATATC 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 610
FaeI CATG 1 cut(s) 421
FalI AAGNNNNNCTT 6 cut(s) 348, 380, 528, 560, 584, 616
FaqI GGGAC 1 cut(s) 436
FatI CATG 1 cut(s) 417
Fnu4HI GCNGC 4 cut(s) 237, 240, 597, 726
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 4 cut(s) 237, 240, 597, 726
FspBI CTAG 1 cut(s) 305
GluI GCNGC 4 cut(s) 237, 240, 597, 726
HaeIII GGCC 4 cut(s) 69, 452, 562, 626
HapII CCGG 2 cut(s) 66, 699
HgaI GACGC 2 cut(s) 224, 637
Hin1II CATG 1 cut(s) 421
HincII GTYRAC 2 cut(s) 12, 178
HindII GTYRAC 2 cut(s) 12, 178
HinfI GANTC 3 cut(s) 62, 267, 751
HpaI GTTAAC 2 cut(s) 12, 178
HpaII CCGG 2 cut(s) 66, 699
HphI GGTGA 2 cut(s) 381, 792
Hpy166II GTNNAC 3 cut(s) 12, 178, 281
Hpy188I TCNGA 3 cut(s) 76, 208, 224
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 3 cut(s) 12, 178, 281
HpyAV CCTTC 6 cut(s) 25, 374, 386, 582, 634, 777
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 7 cut(s) 134, 185, 236, 341, 608, 693, 728
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 248, 605, 699
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 1 cut(s) 421
KroI GCCGGC 1 cut(s) 698
KroNI GCCGGC 1 cut(s) 700
KspAI GTTAAC 2 cut(s) 12, 178
Kzo9I GATC 3 cut(s) 208, 301, 661
Lsp1109I GCAGC 3 cut(s) 248, 608, 712
LweI GCATC 2 cut(s) 460, 711
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 103, 349, 481
MalI GATC 3 cut(s) 210, 303, 663
MboI GATC 3 cut(s) 208, 301, 661
MboII GAAGA 5 cut(s) 40, 62, 117, 500, 548
MfeI CAATTG 2 cut(s) 271, 652
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 638
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 6 cut(s) 53, 271, 385, 396, 618, 652
MluNI TGGCCA 1 cut(s) 626
MlyI GAGTC 3 cut(s) 56, 276, 745
MnlI CCTC 9 cut(s) 80, 257, 378, 383, 493, 496, 573, 712, 732
Mox20I TGGCCA 1 cut(s) 626
Mph1103I ATGCAT 1 cut(s) 610
MroNI GCCGGC 1 cut(s) 698
MroXI GAANNNNTTC 1 cut(s) 202
MscI TGGCCA 1 cut(s) 626
MseI TTAA 8 cut(s) 11, 56, 177, 428, 464, 509, 675, 808
Msp20I TGGCCA 1 cut(s) 626
MspCI CTTAAG 1 cut(s) 508
MspI CCGG 2 cut(s) 66, 699
MspR9I CCNGG 1 cut(s) 666
MunI CAATTG 2 cut(s) 271, 652
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 4 cut(s) 236, 248, 605, 699
NaeI GCCGGC 1 cut(s) 700
NdeII GATC 3 cut(s) 208, 301, 661
NgoMIV GCCGGC 1 cut(s) 698
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 610
PaqCI CACCTGC 1 cut(s) 176
PctI GAATGC 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 700
PdmI GAANNNNTTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 558
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 4 cut(s) 238, 241, 598, 727
PleI GAGTC 3 cut(s) 56, 275, 745
PpsI GAGTC 3 cut(s) 56, 275, 745
Psp1406I AACGTT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 450
PstNI CAGNNNCTG 2 cut(s) 113, 212
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 789
RsaNI GTAC 1 cut(s) 788
SaqAI TTAA 8 cut(s) 11, 56, 177, 428, 464, 509, 675, 808
SatI GCNGC 4 cut(s) 237, 240, 597, 726
Sau3AI GATC 3 cut(s) 208, 301, 661
Sau96I GGNCC 1 cut(s) 450
SchI GAGTC 3 cut(s) 56, 276, 745
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 1 cut(s) 638
SfaNI GCATC 2 cut(s) 460, 711
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 6 cut(s) 53, 271, 385, 396, 618, 652
SsiI CCGC 3 cut(s) 44, 240, 458
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 664
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 483
TaqI TCGA 1 cut(s) 714
TasI AATT 6 cut(s) 53, 271, 385, 396, 618, 652
TatI WGTACW 1 cut(s) 787
TauI GCSGC 1 cut(s) 242
Tru1I TTAA 8 cut(s) 11, 56, 177, 428, 464, 509, 675, 808
Tru9I TTAA 8 cut(s) 11, 56, 177, 428, 464, 509, 675, 808
TscAI CASTG 1 cut(s) 12
TseI GCWGC 3 cut(s) 236, 596, 725
TspDTI ATGAA 1 cut(s) 459
TspRI CASTG 1 cut(s) 12
Van91I CCANNNNNTGG 1 cut(s) 558
Vha464I CTTAAG 1 cut(s) 508
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.