Rroxscaffold_4G00301840

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000170
Physical Location & Seq
Reverse (-)
22188525 .. 22190116
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301840.1

Sequence Viewer

Length: 729 bp
ATGGCGGAATCAACTAAGACGTTTGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTCGAAACTGTAAGGCAGTTGGCCTCAAAGGGAATCACAGTGGTGTTAACTGCTAGAGACGAGAAGAGGGGCCTTGAAGCTGTTGAGAAACTGAAAGAATCTGGCCTCTCAGGCCAAGTAGTTTTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTGCTTCTCTGGCACAATTCATCAAAACACAGTATGGAAGACTCGATATTTTGGTGAACAATGCTGCGATTTTTGGAGCTATAATTGATAATACTGATGGTTTTAAAGCTGCAATTGAATCTGGTGCTTTAAAGAACATACCAAGTGATCGAGTGAAAGCAGTTCTTAGTACTGATGTCGAGAACCTGAGCGAAGAGAGTGTAGATGAAATATTAACAGAGTTTCTAAACGACCTCAAGGAGAATTTACTTGAAAGCAAGGGTTGGCCTCCTGCGATGTCAGGCTATACAGTCTCAAAAGCAGCAATGAATGCATATACAAGGATTCTAGCCAAGAAGTACCCCGGTTTTCGCGTCAACTGTGTCTGCCCTGGCTATGCCAAAACAGATATAAACTTAAATACCGGCGGCTTGCCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTAATGATGGCCCCACTGGCCAATTCTTTTTTAGGTCTGAAGTACAAAGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

242

Amino Acids

25.89

Weight (kDa)

5.1

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 9 - 98 3e-22 short chain dehydrogenase
KR PF08659 10 - 96 5.9e-07 KR domain
Epimerase PF01370 10 - 193 4.4e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 15 - 98 8.5e-17 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 162 - 203 4.1e-06 short chain dehydrogenase
adh_short_C2 PF13561 162 - 204 6.2e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 567
AciI CCGC 2 cut(s) 5, 621
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 691
AcsI RAATTY 2 cut(s) 457, 658
AfaI GTAC 3 cut(s) 385, 554, 717
AfiI CCNNNNNNNGG 1 cut(s) 680
AgsI TTSAA 4 cut(s) 134, 332, 467, 635
AjnI CCWGG 1 cut(s) 583
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 3 cut(s) 137, 293, 323
AluI AGCT 3 cut(s) 137, 293, 323
Alw26I GTCTC 2 cut(s) 108, 511
AlwI GGATC 1 cut(s) 46
AoxI GGCC 7 cut(s) 78, 127, 160, 169, 479, 682, 691
ApeKI GCWGC 5 cut(s) 278, 323, 515, 644, 670
ApoI RAATTY 2 cut(s) 457, 658
AspS9I GGNCC 2 cut(s) 127, 683
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 2 cut(s) 176, 280
AsuII TTCGAA 1 cut(s) 60
BalI TGGCCA 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 5 cut(s) 265, 310, 527, 631, 657
BccI CCATC 2 cut(s) 305, 674
BciT130I CCWGG 1 cut(s) 585
BcnI CCSGG 1 cut(s) 558
BcoDI GTCTC 2 cut(s) 108, 511
BfaI CTAG 3 cut(s) 111, 210, 542
BglI GCCNNNNNGGC 2 cut(s) 168, 690
BisI GCNGC 6 cut(s) 279, 324, 516, 622, 645, 671
BlsI GCNGC 6 cut(s) 280, 325, 517, 623, 646, 672
BmcAI AGTACT 1 cut(s) 385
Bme1390I CCNGG 2 cut(s) 558, 585
BmgT120I GGNCC 2 cut(s) 127, 683
BmiI GGNNCC 2 cut(s) 128, 685
BmrFI CCNGG 2 cut(s) 558, 585
BpiI GAAGAC 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 401
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 556, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse118I RCCGGY 1 cut(s) 617
Bse1I ACTGG 1 cut(s) 694
Bse3DI GCAATG 2 cut(s) 525, 665
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 2 cut(s) 556, 583
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMI GCAATG 2 cut(s) 525, 665
BseMII CTCAG 2 cut(s) 180, 392
BseNI ACTGG 1 cut(s) 694
BseXI GCAGC 5 cut(s) 265, 310, 527, 631, 657
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 7 cut(s) 80, 129, 162, 171, 481, 684, 693
BsiSI CCGG 2 cut(s) 558, 618
BslI CCNNNNNNNGG 1 cut(s) 680
BsmAI GTCTC 2 cut(s) 108, 511
BsmBI CGTCTC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 7 cut(s) 80, 129, 162, 171, 481, 684, 693
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 38, 361
BspACI CCGC 2 cut(s) 5, 621
BspANI GGCC 7 cut(s) 80, 129, 162, 171, 481, 684, 693
BspCNI CTCAG 2 cut(s) 179, 393
BspFNI CGCG 1 cut(s) 567
BspLI GGNNCC 2 cut(s) 128, 685
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 2 cut(s) 525, 665
BsrFI RCCGGY 1 cut(s) 617
BsrI ACTGG 1 cut(s) 694
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 2 cut(s) 556, 583
BssMI GATC 2 cut(s) 38, 361
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 5 cut(s) 67, 97, 246, 505, 575
Bst6I CTCTTC 2 cut(s) 116, 402
BstAPI GCANNNNNTGC 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 626
BstDEI CTNAG 4 cut(s) 15, 166, 380, 401
BstFNI CGCG 1 cut(s) 567
BstKTI GATC 2 cut(s) 41, 364
BstMAI GTCTC 2 cut(s) 108, 511
BstMBI GATC 2 cut(s) 38, 361
BstMWI GCNNNNNNNGC 6 cut(s) 168, 206, 215, 224, 524, 690
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 2 cut(s) 556, 583
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 5 cut(s) 265, 310, 527, 631, 657
BstV2I GAAGAC 1 cut(s) 259
BsuRI GGCC 7 cut(s) 80, 129, 162, 171, 481, 684, 693
BtgZI GCGATG 1 cut(s) 503
BtsIMutI CAGTG 2 cut(s) 102, 687
Cac8I GCNNGC 1 cut(s) 626
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 127, 683
CseI GACGC 1 cut(s) 556
Csp6I GTAC 3 cut(s) 384, 553, 716
CviQI GTAC 3 cut(s) 384, 553, 716
DdeI CTNAG 4 cut(s) 15, 166, 380, 401
DpnI GATC 2 cut(s) 40, 363
DpnII GATC 2 cut(s) 38, 361
DraI TTTAAA 2 cut(s) 319, 345
EaeI YGGCCR 1 cut(s) 691
Eam1104I CTCTTC 2 cut(s) 116, 402
EarI CTCTTC 2 cut(s) 116, 402
EciI GGCGGA 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 529
Esp3I CGTCTC 1 cut(s) 108
FaiI YATR 8 cut(s) 249, 296, 353, 501, 529, 531, 591, 605
FalI AAGNNNNNCTT 2 cut(s) 363, 395
Fnu4HI GCNGC 6 cut(s) 279, 324, 516, 622, 645, 671
Fsp4HI GCNGC 6 cut(s) 279, 324, 516, 622, 645, 671
FspBI CTAG 3 cut(s) 111, 210, 542
GluI GCNGC 6 cut(s) 279, 324, 516, 622, 645, 671
HaeIII GGCC 7 cut(s) 80, 129, 162, 171, 481, 684, 693
HapII CCGG 2 cut(s) 558, 618
HgaI GACGC 1 cut(s) 556
HincII GTYRAC 2 cut(s) 105, 571
HindII GTYRAC 2 cut(s) 105, 571
HinfI GANTC 8 cut(s) 8, 51, 57, 90, 155, 255, 332, 538
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 2 cut(s) 558, 618
HphI GGTGA 2 cut(s) 176, 280
Hpy166II GTNNAC 3 cut(s) 105, 271, 571
Hpy188I TCNGA 2 cut(s) 56, 712
Hpy188III TCNNGA 2 cut(s) 394, 655
Hpy8I GTNNAC 3 cut(s) 105, 271, 571
HpyAV CCTTC 1 cut(s) 632
HpyCH4III ACNGT 5 cut(s) 67, 97, 246, 505, 575
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 4 cut(s) 26, 326, 527, 647
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 206, 215, 224, 524, 690
HpyF3I CTNAG 4 cut(s) 15, 166, 380, 401
HpySE526I ACGT 1 cut(s) 20
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 38, 361
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 5 cut(s) 265, 310, 527, 631, 657
MaeI CTAG 3 cut(s) 111, 210, 542
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 363
MboI GATC 2 cut(s) 38, 361
MboII GAAGA 4 cut(s) 133, 264, 419, 647
MfeI CAATTG 1 cut(s) 327
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 6 cut(s) 230, 297, 327, 457, 658, 695
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 5 cut(s) 91, 117, 173, 458, 492
Mox20I TGGCCA 1 cut(s) 693
Mph1103I ATGCAT 1 cut(s) 529
MscI TGGCCA 1 cut(s) 693
MseI TTAA 6 cut(s) 104, 318, 344, 428, 611, 727
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 693
MspI CCGG 2 cut(s) 558, 618
MspR9I CCNGG 2 cut(s) 558, 585
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 6 cut(s) 168, 206, 215, 224, 524, 690
NciI CCSGG 1 cut(s) 558
NdeII GATC 2 cut(s) 38, 361
NlaIV GGNNCC 2 cut(s) 128, 685
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 529
NspV TTCGAA 1 cut(s) 60
OliI CACNNNNGTG 1 cut(s) 98
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 7 cut(s) 8, 51, 57, 90, 155, 332, 538
PkrI GCNGC 6 cut(s) 280, 325, 517, 623, 646, 672
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 2 cut(s) 128, 685
PspPI GGNCC 2 cut(s) 127, 683
RsaI GTAC 3 cut(s) 385, 554, 717
RsaNI GTAC 3 cut(s) 384, 553, 716
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 6 cut(s) 104, 318, 344, 428, 611, 727
SatI GCNGC 6 cut(s) 279, 324, 516, 622, 645, 671
Sau3AI GATC 2 cut(s) 38, 361
Sau96I GGNCC 2 cut(s) 127, 683
ScaI AGTACT 1 cut(s) 385
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 558, 585
SetI ASST 8 cut(s) 23, 139, 295, 325, 402, 450, 643, 710
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 690
SfuI TTCGAA 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 6 cut(s) 230, 297, 327, 457, 658, 695
SsiI CCGC 2 cut(s) 5, 621
SspI AATATT 1 cut(s) 426
SspMI CTAG 3 cut(s) 111, 210, 542
StyD4I CCNGG 2 cut(s) 556, 583
TaaI ACNGT 5 cut(s) 67, 97, 246, 505, 575
TaiI ACGT 1 cut(s) 23
TaqI TCGA 4 cut(s) 60, 258, 364, 393
TasI AATT 6 cut(s) 230, 297, 327, 457, 658, 695
TatI WGTACW 2 cut(s) 383, 715
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 7 cut(s) 8, 51, 57, 90, 155, 332, 538
Tru1I TTAA 6 cut(s) 104, 318, 344, 428, 611, 727
Tru9I TTAA 6 cut(s) 104, 318, 344, 428, 611, 727
TscAI CASTG 2 cut(s) 102, 694
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 5 cut(s) 278, 323, 515, 644, 670
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 223, 435, 536
TspRI CASTG 2 cut(s) 102, 694
XapI RAATTY 2 cut(s) 457, 658
XspI CTAG 3 cut(s) 111, 210, 542
ZrmI AGTACT 1 cut(s) 385
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.