Prupe.2G160600_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000170
Physical Location & Seq
Forward (+)
21247860 .. 21250095
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G160600.1

Sequence Viewer

Length: 993 bp
ATGGCTGGGGTGGGAGGTGGGGGTGGCTGCGCAGGTGGGAGGAGAGATGAGTTGTGGGTGTTGACTGCTGGGTTTTCCCAGAGGAGGGGGCCAGGGCGAGTTGGGGTGGGGATCGGGTATGCAGTTGTTACTGGGGCAAACAAAGGCATAGGATTGGAAACTGTGAGGCAATTGGCCTCAAATGGATTCACTGTAGTTTTAACTGCCAGAGATGAGAAAAGGGGTCTTGAAGCTGCTGAGAAACTCAAAGAGTCTGGCCTCTCAGGTCAAGTGGTTTTTCATCAACTTGATGTGGCTAACCCAGCTACTGTTGCTTCCTTGGCAGACTTCATCAAAACCCAGTTTGGGAAACTCGATATCTTGGTGAACAATGCAGGGATTTTTGGAAGCATATTAGATGGTGATGCTTTTAAAGCTGTAATAGCCTCTGGTGCCGTGGAAGGAGGAGAAGTTGATTTGAGTAAACTAGTGACTGAAACGTATGAGTTAACAGAAAAATGCTTGCAAATAAACTATTATGGTGCTAAAAGAACAGCTGAAGCACTTATCCCACTCCTCCAGTTATCTGACTCACCGAGAATTGTTAATGTTTCGTCTGGCTCGGGGAAGTTAAAGAAGATACCAAGTGATTGGGCTAAAGGAGTTTTTACTGATGCCGAAAACCTAACAGAAGAGAGAGTAGATAAGGTACTGACTGAGCTTCTAAAAGATTTCAAGGAGGGTTCACTTGAAAGTAAGGGCTGGCCTTCTTCTATGCCTGCCTATATAGTCTCAAAAGCAGCACTGAACGCATATACAAGGATTCTAGGAAAGAAGTACCCCACTTTTCGTATCAATTCAGTCTGCCCTGGCTTTGTCAAAACAGATATAAACTTCAATGCCGGCGTCTTGCCTGTCGAAGAGGGTGGTGCCAGGATTGTAAAGTTAGCATTGCTGCCCAATGATGGCCCTACTGGCTCCTTCTTTGTTCACGATGAAGTGTCAGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

331

Amino Acids

34.95

Weight (kDa)

6.24

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 23
Acc16I TGCGCA 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 23
AccB1I GGYRCC 2 cut(s) 431, 908
AclWI GGATC 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 558
AcyI GRCGYC 1 cut(s) 885
AfaI GTAC 2 cut(s) 690, 818
AfiI CCNNNNNNNGG 4 cut(s) 84, 85, 345, 944
AgsI TTSAA 4 cut(s) 230, 715, 731, 877
AhlI ACTAGT 1 cut(s) 466
AjnI CCWGG 3 cut(s) 91, 847, 911
AluBI AGCT 5 cut(s) 233, 305, 416, 536, 700
AluI AGCT 5 cut(s) 233, 305, 416, 536, 700
Alw26I GTCTC 1 cut(s) 775
AlwI GGATC 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 601
AoxI GGCC 5 cut(s) 89, 174, 256, 743, 946
ApeKI GCWGC 4 cut(s) 27, 233, 779, 934
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 89, 947
AsuHPI GGTGA 3 cut(s) 376, 413, 564
AvaI CYCGRG 1 cut(s) 601
BanI GGYRCC 2 cut(s) 431, 908
BbvI GCAGC 4 cut(s) 14, 220, 791, 921
BccI CCATC 2 cut(s) 392, 938
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 3 cut(s) 93, 849, 913
BcoDI GTCTC 1 cut(s) 775
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 2 cut(s) 467, 806
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 954
BisI GCNGC 4 cut(s) 28, 234, 780, 935
BlsI GCNGC 4 cut(s) 29, 235, 781, 936
Bme1390I CCNGG 3 cut(s) 93, 849, 913
BmeT110I CYCGRG 1 cut(s) 601
BmgT120I GGNCC 2 cut(s) 89, 947
BmiI GGNNCC 4 cut(s) 90, 433, 910, 958
BmrFI CCNGG 3 cut(s) 93, 849, 913
BmrI ACTGGG 2 cut(s) 141, 334
BmsI GCATC 2 cut(s) 394, 643
BmuI ACTGGG 2 cut(s) 141, 334
BpmI CTGGAG 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 885
BsaJI CCNNGG 4 cut(s) 92, 318, 435, 847
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 85, 345, 944
Bse118I RCCGGY 1 cut(s) 881
Bse1I ACTGG 4 cut(s) 136, 340, 559, 958
Bse3DI GCAATG 1 cut(s) 929
BseBI CCWGG 3 cut(s) 93, 849, 913
BseDI CCNNGG 4 cut(s) 92, 318, 435, 847
BseLI CCNNNNNNNGG 4 cut(s) 84, 85, 345, 944
BseMI GCAATG 1 cut(s) 929
BseMII CTCAG 3 cut(s) 228, 276, 687
BseNI ACTGG 4 cut(s) 136, 340, 559, 958
BseRI GAGGAG 4 cut(s) 55, 97, 459, 545
BseXI GCAGC 4 cut(s) 14, 220, 791, 921
BseYI CCCAGC 3 cut(s) 5, 68, 301
BshFI GGCC 5 cut(s) 91, 176, 258, 745, 948
BshNI GGYRCC 2 cut(s) 431, 908
BsiHKCI CYCGRG 1 cut(s) 601
BsiSI CCGG 1 cut(s) 882
BslI CCNNNNNNNGG 4 cut(s) 84, 85, 345, 944
BsmAI GTCTC 1 cut(s) 775
BsnI GGCC 5 cut(s) 91, 176, 258, 745, 948
BsoBI CYCGRG 1 cut(s) 601
Bsp143I GATC 1 cut(s) 111
BspANI GGCC 5 cut(s) 91, 176, 258, 745, 948
BspCNI CTCAG 3 cut(s) 229, 275, 688
BspLI GGNNCC 4 cut(s) 90, 433, 910, 958
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 119
BspT107I GGYRCC 2 cut(s) 431, 908
BsrDI GCAATG 1 cut(s) 929
BsrFI RCCGGY 1 cut(s) 881
BsrI ACTGG 4 cut(s) 136, 340, 559, 958
BssAI RCCGGY 1 cut(s) 881
BssECI CCNNGG 4 cut(s) 92, 318, 435, 847
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 1 cut(s) 885
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 3 cut(s) 93, 849, 913
Bst4CI ACNGT 3 cut(s) 163, 193, 310
Bst6I CTCTTC 2 cut(s) 666, 894
BstACI GRCGYC 1 cut(s) 885
BstC8I GCNNGC 4 cut(s) 503, 743, 759, 883
BstDEI CTNAG 3 cut(s) 237, 262, 696
BstDSI CCRYGG 1 cut(s) 435
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 775
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 8 cut(s) 302, 311, 320, 413, 422, 431, 788, 954
BstNI CCWGG 3 cut(s) 93, 849, 913
BstSCI CCNGG 3 cut(s) 91, 847, 911
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 14, 220, 791, 921
BstXI CCANNNNNNTGG 1 cut(s) 630
BsuRI GGCC 5 cut(s) 91, 176, 258, 745, 948
BtgI CCRYGG 1 cut(s) 435
BtsIMutI CAGTG 2 cut(s) 189, 782
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 4 cut(s) 503, 743, 759, 883
CaiI CAGNNNCTG 1 cut(s) 308
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 881
Cfr13I GGNCC 2 cut(s) 89, 947
CseI GACGC 1 cut(s) 874
Csp6I GTAC 2 cut(s) 689, 817
CviQI GTAC 2 cut(s) 689, 817
DdeI CTNAG 3 cut(s) 237, 262, 696
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
DraI TTTAAA 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 666, 894
EarI CTCTTC 2 cut(s) 666, 894
Eco130I CCWWGG 1 cut(s) 318
Eco32I GATATC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 601
EcoRII CCWGG 3 cut(s) 91, 847, 911
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
Fnu4HI GCNGC 4 cut(s) 28, 234, 780, 935
Fsp4HI GCNGC 4 cut(s) 28, 234, 780, 935
FspBI CTAG 2 cut(s) 467, 806
FspI TGCGCA 1 cut(s) 31
GlaI GCGC 1 cut(s) 31
GluI GCNGC 4 cut(s) 28, 234, 780, 935
GsaI CCCAGC 3 cut(s) 9, 72, 305
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 5 cut(s) 91, 176, 258, 745, 948
HapII CCGG 1 cut(s) 882
HgaI GACGC 1 cut(s) 874
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 885
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 2 cut(s) 63, 489
HindII GTYRAC 2 cut(s) 63, 489
HinfI GANTC 4 cut(s) 186, 251, 569, 802
HpaI GTTAAC 1 cut(s) 489
HpaII CCGG 1 cut(s) 882
HphI GGTGA 3 cut(s) 376, 413, 564
Hpy166II GTNNAC 6 cut(s) 63, 367, 464, 489, 725, 970
Hpy188I TCNGA 2 cut(s) 568, 985
Hpy188III TCNNGA 2 cut(s) 227, 971
Hpy8I GTNNAC 6 cut(s) 63, 367, 464, 489, 725, 970
HpyAV CCTTC 3 cut(s) 434, 756, 970
HpyCH4III ACNGT 3 cut(s) 163, 193, 310
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 3 cut(s) 122, 374, 505
HpyF10VI GCNNNNNNNGC 8 cut(s) 302, 311, 320, 413, 422, 431, 788, 954
HpyF3I CTNAG 3 cut(s) 237, 262, 696
HpySE526I ACGT 1 cut(s) 479
Hsp92I GRCGYC 1 cut(s) 885
HspAI GCGC 1 cut(s) 30
KroI GCCGGC 1 cut(s) 881
KroNI GCCGGC 1 cut(s) 883
KspAI GTTAAC 1 cut(s) 489
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 962
Lsp1109I GCAGC 4 cut(s) 14, 220, 791, 921
LweI GCATC 2 cut(s) 394, 643
MaeI CTAG 2 cut(s) 467, 806
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 2 cut(s) 127, 469
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 4 cut(s) 628, 683, 741, 911
MfeI CAATTG 1 cut(s) 170
MluCI AATT 3 cut(s) 170, 579, 835
MlyI GAGTC 2 cut(s) 260, 563
MroNI GCCGGC 1 cut(s) 881
MseI TTAA 5 cut(s) 200, 411, 488, 585, 611
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 1 cut(s) 882
MspR9I CCNGG 3 cut(s) 93, 849, 913
MunI CAATTG 1 cut(s) 170
MvaI CCWGG 3 cut(s) 93, 849, 913
MwoI GCNNNNNNNGC 8 cut(s) 302, 311, 320, 413, 422, 431, 788, 954
NaeI GCCGGC 1 cut(s) 883
NdeII GATC 1 cut(s) 111
NgoMIV GCCGGC 1 cut(s) 881
NlaIV GGNNCC 4 cut(s) 90, 433, 910, 958
NmuCI GTSAC 1 cut(s) 469
NsbI TGCGCA 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 23
PdiI GCCGGC 1 cut(s) 883
PfeI GAWTC 2 cut(s) 186, 802
PkrI GCNGC 4 cut(s) 29, 235, 781, 936
PleI GAGTC 2 cut(s) 259, 563
PpsI GAGTC 2 cut(s) 259, 563
Psp6I CCWGG 3 cut(s) 91, 847, 911
PspFI CCCAGC 3 cut(s) 5, 68, 301
PspGI CCWGG 3 cut(s) 91, 847, 911
PspN4I GGNNCC 4 cut(s) 90, 433, 910, 958
PspPI GGNCC 2 cut(s) 89, 947
PstNI CAGNNNCTG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 2 cut(s) 690, 818
RsaNI GTAC 2 cut(s) 689, 817
SaqAI TTAA 5 cut(s) 200, 411, 488, 585, 611
SatI GCNGC 4 cut(s) 28, 234, 780, 935
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 2 cut(s) 89, 947
SchI GAGTC 2 cut(s) 260, 563
ScrFI CCNGG 3 cut(s) 93, 849, 913
SfaNI GCATC 2 cut(s) 394, 643
SfcI CTRYAG 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 3 cut(s) 170, 579, 835
SspMI CTAG 2 cut(s) 467, 806
StyD4I CCNGG 3 cut(s) 91, 847, 911
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 163, 193, 310
TaiI ACGT 1 cut(s) 482
TaqI TCGA 2 cut(s) 354, 897
TasI AATT 3 cut(s) 170, 579, 835
TfiI GAWTC 2 cut(s) 186, 802
Tru1I TTAA 5 cut(s) 200, 411, 488, 585, 611
Tru9I TTAA 5 cut(s) 200, 411, 488, 585, 611
TscAI CASTG 2 cut(s) 196, 789
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 4 cut(s) 27, 233, 779, 934
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 269, 319, 990
TspRI CASTG 2 cut(s) 196, 789
XspI CTAG 2 cut(s) 467, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.