Rh1AG247900

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000170
Physical Location & Seq
Forward (+)
46201351 .. 46202877
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG247900.1

Sequence Viewer

Length: 897 bp
ATGGCAGAATCAACTAAGAGGTGTGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTCGAAACTGTAAGGCAGTTGGCCTCAAAGGGAATCACAGTGGTGTTAACTGCTAGAGATGAGAAGAGGGGCCTTGAAGCTGTTGAGAAACTGAAAGAATCTGGCCTCTCAGGCCAAGTAGTTTTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTGCTTCTCTGGCACAATTCATCAAAACCCAGATCGGGAAACTCGACATTTTGGTGAACAATGCAGGAATTGGTGGAGTTATAGTTGATGCTGATGGTTTTAAAGCTGCAATTGAATCTCGTGCTGAAGGAGGACAGATTGATTGGAAAAAGTTGATGACTGAAACTTACGAGCTAACAGAAGAATGCTTGCAAATAAATTATTATGGTGCTAAAAGAACAGCTGAAGCACTAATTCCACTCCTCCAGCTATCTGATTCACCAAGAATTGCTAATGTTTCATCCTCTATGGGGAAGTTAAAGAACATACCAAGTGATCGAGTGAAAGGAGTTCTTAGTACTGATGTGGAGAACCTAAGCGAAGAGAGTGTAGATGAAGTACTGACAGAGTTTCTAAACGATTTCAAAGAGAATTTACTTGAAAGCAAGGGTTGGCCTTCTATGATGCCAGGCTATTCAGTCTCAAAAGCAGCAATGAATGCACATACAAGGATTCTAGCCAAGAAGTACCCCGATTTTCGCATCAACTCTGTCTGCCCTGGCTATGTCAAAACAGATATAAACTTCAATACCGGCGTCTTGCCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTAATGATGGCCCCACAGGCCAATTCTTTGTTCAGTCTGAAGTACAAAGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

298

Amino Acids

32.17

Weight (kDa)

5.12

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 172 1.3e-26 short chain dehydrogenase
KR PF08659 10 - 95 1.1e-06 KR domain
adh_short_C2 PF13561 15 - 178 2.5e-17 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 214 - 259 2.9e-06 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 219 - 259 8.6e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 625, 826
AcuI CTGAAG 2 cut(s) 360, 459
AcyI GRCGYC 1 cut(s) 789
AfaI GTAC 4 cut(s) 553, 594, 722, 885
AfiI CCNNNNNNNGG 3 cut(s) 249, 504, 848
AgsI TTSAA 6 cut(s) 134, 329, 619, 635, 781, 803
AjnI CCWGG 2 cut(s) 661, 751
AjuI GAANNNNNNNTTGG 4 cut(s) 165, 197, 855, 887
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 5 cut(s) 137, 320, 388, 437, 463
AluI AGCT 5 cut(s) 137, 320, 388, 437, 463
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 1 cut(s) 46
AoxI GGCC 7 cut(s) 78, 127, 160, 169, 647, 850, 859
ApeKI GCWGC 4 cut(s) 320, 683, 812, 838
ApoI RAATTY 2 cut(s) 625, 826
AspS9I GGNCC 2 cut(s) 127, 851
AsuHPI GGTGA 3 cut(s) 176, 280, 465
AsuII TTCGAA 1 cut(s) 60
BauI CACGAG 1 cut(s) 333
BbvI GCAGC 4 cut(s) 307, 695, 799, 825
BccI CCATC 2 cut(s) 302, 842
BciT130I CCWGG 2 cut(s) 663, 753
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 3 cut(s) 111, 210, 710
BglI GCCNNNNNGGC 2 cut(s) 168, 858
BisI GCNGC 4 cut(s) 321, 684, 813, 839
BlsI GCNGC 4 cut(s) 322, 685, 814, 840
BmcAI AGTACT 2 cut(s) 553, 594
Bme1390I CCNGG 2 cut(s) 663, 753
BmgT120I GGNCC 2 cut(s) 127, 851
BmiI GGNNCC 2 cut(s) 128, 853
BmrFI CCNGG 2 cut(s) 663, 753
BmsI GCATC 3 cut(s) 292, 648, 744
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 1 cut(s) 751
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 504, 848
Bse118I RCCGGY 1 cut(s) 785
Bse3DI GCAATG 2 cut(s) 693, 833
BseBI CCWGG 2 cut(s) 663, 753
BseDI CCNNGG 1 cut(s) 751
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 3 cut(s) 249, 504, 848
BseMI GCAATG 2 cut(s) 693, 833
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 4 cut(s) 307, 695, 799, 825
BsgI GTGCAG 1 cut(s) 45
BshFI GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
BsiSI CCGG 1 cut(s) 786
BslI CCNNNNNNNGG 3 cut(s) 249, 504, 848
BsmAI GTCTC 1 cut(s) 679
BsmI GAATGC 2 cut(s) 404, 697
BsnI GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 38, 246, 529
BspANI GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 128, 853
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 2 cut(s) 693, 833
BsrFI RCCGGY 1 cut(s) 785
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 1 cut(s) 751
BssMI GATC 3 cut(s) 38, 246, 529
BssNI GRCGYC 1 cut(s) 789
BssSI CACGAG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 663, 753
Bst4CI ACNGT 2 cut(s) 67, 97
Bst6I CTCTTC 2 cut(s) 116, 570
BstACI GRCGYC 1 cut(s) 789
BstAPI GCANNNNNTGC 1 cut(s) 692
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 4 cut(s) 15, 166, 548, 569
BstF5I GGATG 1 cut(s) 494
BstKTI GATC 3 cut(s) 41, 249, 532
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 3 cut(s) 38, 246, 529
BstMWI GCNNNNNNNGC 6 cut(s) 168, 206, 215, 224, 692, 858
BstNI CCWGG 2 cut(s) 663, 753
BstSCI CCNGG 2 cut(s) 661, 751
BstV1I GCAGC 4 cut(s) 307, 695, 799, 825
BsuRI GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
BtsCI GGATG 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 2 cut(s) 127, 851
CseI GACGC 1 cut(s) 778
Csp6I GTAC 4 cut(s) 552, 593, 721, 884
CviQI GTAC 4 cut(s) 552, 593, 721, 884
DdeI CTNAG 4 cut(s) 15, 166, 548, 569
DpnI GATC 3 cut(s) 40, 248, 531
DpnII GATC 3 cut(s) 38, 246, 529
DraI TTTAAA 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 116, 570
EarI CTCTTC 2 cut(s) 116, 570
Eco57I CTGAAG 2 cut(s) 360, 459
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 661, 751
FaiI YATR 8 cut(s) 296, 420, 503, 521, 656, 699, 759, 773
FalI AAGNNNNNCTT 2 cut(s) 531, 563
Fnu4HI GCNGC 4 cut(s) 321, 684, 813, 839
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 321, 684, 813, 839
FspBI CTAG 3 cut(s) 111, 210, 710
GluI GCNGC 4 cut(s) 321, 684, 813, 839
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 7 cut(s) 80, 129, 162, 171, 649, 852, 861
HapII CCGG 1 cut(s) 786
HgaI GACGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 789
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 8 cut(s) 8, 51, 57, 90, 155, 329, 470, 706
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 786
HphI GGTGA 3 cut(s) 176, 280, 465
Hpy166II GTNNAC 2 cut(s) 105, 271
Hpy188I TCNGA 3 cut(s) 56, 469, 880
Hpy188III TCNNGA 2 cut(s) 250, 823
Hpy8I GTNNAC 2 cut(s) 105, 271
HpyAV CCTTC 3 cut(s) 335, 660, 800
HpyCH4III ACNGT 2 cut(s) 67, 97
HpyCH4V TGCA 6 cut(s) 26, 278, 323, 406, 695, 815
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 206, 215, 224, 692, 858
HpyF3I CTNAG 4 cut(s) 15, 166, 548, 569
Hsp92I GRCGYC 1 cut(s) 789
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 3 cut(s) 38, 246, 529
Lsp1109I GCAGC 4 cut(s) 307, 695, 799, 825
LweI GCATC 3 cut(s) 292, 648, 744
MaeI CTAG 3 cut(s) 111, 210, 710
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 40, 248, 531
MboI GATC 3 cut(s) 38, 246, 529
MboII GAAGA 4 cut(s) 133, 407, 587, 815
MfeI CAATTG 1 cut(s) 324
MluCI AATT 9 cut(s) 230, 282, 324, 412, 447, 480, 625, 826, 863
MnlI CCTC 7 cut(s) 12, 91, 117, 173, 338, 467, 508
MseI TTAA 4 cut(s) 104, 315, 512, 895
MslI CAYNNNNRTG 2 cut(s) 98, 266
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 2 cut(s) 663, 753
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 404, 697
MvaI CCWGG 2 cut(s) 663, 753
MwoI GCNNNNNNNGC 6 cut(s) 168, 206, 215, 224, 692, 858
NdeII GATC 3 cut(s) 38, 246, 529
NlaIV GGNNCC 2 cut(s) 128, 853
NmuCI GTSAC 1 cut(s) 31
NspV TTCGAA 1 cut(s) 60
OliI CACNNNNGTG 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 2 cut(s) 404, 697
PfeI GAWTC 8 cut(s) 8, 51, 57, 90, 155, 329, 470, 706
PkrI GCNGC 4 cut(s) 322, 685, 814, 840
Psp6I CCWGG 2 cut(s) 661, 751
PspGI CCWGG 2 cut(s) 661, 751
PspN4I GGNNCC 2 cut(s) 128, 853
PspPI GGNCC 2 cut(s) 127, 851
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 4 cut(s) 553, 594, 722, 885
RsaNI GTAC 4 cut(s) 552, 593, 721, 884
RseI CAYNNNNRTG 2 cut(s) 98, 266
SaqAI TTAA 4 cut(s) 104, 315, 512, 895
SatI GCNGC 4 cut(s) 321, 684, 813, 839
Sau3AI GATC 3 cut(s) 38, 246, 529
Sau96I GGNCC 2 cut(s) 127, 851
ScaI AGTACT 2 cut(s) 553, 594
ScrFI CCNGG 2 cut(s) 663, 753
SetI ASST 8 cut(s) 23, 139, 322, 390, 439, 465, 570, 811
SfaNI GCATC 3 cut(s) 292, 648, 744
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 858
SfuI TTCGAA 1 cut(s) 60
SmiMI CAYNNNNRTG 2 cut(s) 98, 266
Sse9I AATT 9 cut(s) 230, 282, 324, 412, 447, 480, 625, 826, 863
SspMI CTAG 3 cut(s) 111, 210, 710
StyD4I CCNGG 2 cut(s) 661, 751
TaaI ACNGT 2 cut(s) 67, 97
TaqI TCGA 3 cut(s) 60, 258, 532
TasI AATT 9 cut(s) 230, 282, 324, 412, 447, 480, 625, 826, 863
TatI WGTACW 3 cut(s) 551, 592, 883
TfiI GAWTC 8 cut(s) 8, 51, 57, 90, 155, 329, 470, 706
Tru1I TTAA 4 cut(s) 104, 315, 512, 895
Tru9I TTAA 4 cut(s) 104, 315, 512, 895
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 4 cut(s) 320, 683, 812, 838
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 223, 483, 603, 704
TspRI CASTG 1 cut(s) 102
XapI RAATTY 2 cut(s) 625, 826
XspI CTAG 3 cut(s) 111, 210, 710
ZrmI AGTACT 2 cut(s) 553, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.