pycom04g09450

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000170
Physical Location & Seq
Reverse (-)
12068267 .. 12086192
17926 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09450.5

Sequence Viewer

Length: 444 bp
ATGGCAGAAGAAGCAGTAAAGAGGTATGCAGTTGTGACAGGAGCTAACAGAGGGATTGGATTTGCCACAGTTAAGCAGTCGGCTTCAAATGGGATCACAGTGGTTTTAACTGCTAGAGATGAGAAGAGAGGTCTTGAAGCTCTTGAAAAATTGAAAGAGTTCGGAGTCTCAGACCGGGTGGTTTTTCATCAGCTTGATGTAACCGATTCTGTCAGTGTTGCTACATTGGCGGATTTTGTCAAAACCCAATTCGGGAAACTCGATATCTTGATAAACAATGCAGCAGTTGTGGGAAGCATAGTAACCCCTGAAAATTTCAAGTCAGCTTTAAGTGGTAAGAGGCCTGAAGAAATCAACTGGAGTGAAATATCGACAATACCAAACTACAAGGTAGCGGAACAATGCCTGAAGACAAACTACTATGGTACCAACAGAAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

148

Amino Acids

16.03

Weight (kDa)

6.6

Isoelectric Point (pI)

22.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 425
AciI CCGC 2 cut(s) 230, 395
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 313
AcuI CTGAAG 2 cut(s) 366, 428
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 5 cut(s) 87, 137, 146, 154, 319
AluBI AGCT 4 cut(s) 44, 140, 193, 326
AluI AGCT 4 cut(s) 44, 140, 193, 326
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 101
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 313
Asp700I GAANNNNTTC 1 cut(s) 158
Asp718I GGTACC 1 cut(s) 425
AsuC2I CCSGG 1 cut(s) 176
BaeI ACNNNNGTAYC 2 cut(s) 409, 442
BanI GGYRCC 1 cut(s) 425
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 293
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 416
BpmI CTGGAG 1 cut(s) 379
BpuMI CCSGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 1 cut(s) 343
BshNI GGYRCC 1 cut(s) 425
BsiSI CCGG 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 2 cut(s) 230, 395
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 427
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 425
BsrI ACTGG 1 cut(s) 362
BssMI GATC 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 70, 100
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 169
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 11, 227
BstSCI CCNGG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 416
BsuRI GGCC 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 105, 220
Csp6I GTAC 1 cut(s) 426
CviJI RGCY 6 cut(s) 44, 83, 140, 193, 326, 343
CviKI_1 RGCY 6 cut(s) 44, 83, 140, 193, 326, 343
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 169
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 343
Eco32I GATATC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 366, 428
EcoRV GATATC 1 cut(s) 265
FaiI YATR 3 cut(s) 27, 299, 423
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 1 cut(s) 343
HapII CCGG 1 cut(s) 175
HinfI GANTC 2 cut(s) 165, 206
HpaII CCGG 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 164, 172
Hpy188III TCNNGA 4 cut(s) 134, 143, 253, 268
HpyCH4III ACNGT 2 cut(s) 70, 100
HpyCH4V TGCA 2 cut(s) 29, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 227
HpyF3I CTNAG 1 cut(s) 169
KpnI GGTACC 1 cut(s) 429
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 6 cut(s) 24, 188, 321, 343, 357, 419
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 3 cut(s) 34, 199, 301
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 4 cut(s) 20, 136, 359, 421
MluCI AATT 3 cut(s) 149, 248, 313
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 4 cut(s) 15, 44, 122, 333
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 3 cut(s) 72, 107, 329
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 11, 227
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 93
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 34
PceI AGGCCT 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 427
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SaqAI TTAA 3 cut(s) 72, 107, 329
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 1 cut(s) 93
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 176
SetI ASST 7 cut(s) 26, 46, 133, 142, 195, 328, 393
Sse9I AATT 3 cut(s) 149, 248, 313
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 2 cut(s) 230, 395
SspMI CTAG 1 cut(s) 114
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 70, 100
TaqI TCGA 2 cut(s) 261, 371
TasI AATT 3 cut(s) 149, 248, 313
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 3 cut(s) 72, 107, 329
Tru9I TTAA 3 cut(s) 72, 107, 329
TscAI CASTG 2 cut(s) 105, 220
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 176
TspRI CASTG 2 cut(s) 105, 220
XapI RAATTY 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.