FvH4_7g13591

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000170
Physical Location & Seq
Forward (+)
12166235 .. 12167691
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13591.t1

Sequence Viewer

Length: 900 bp
ATGGCAGAATCAACTAAGAGGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTCGAGACTGTAAGGCAATTGGCCACAAAGGGAATCACTGTGGTCTTAACTGCTAGAGATGAGAAGAGGGGCCTTGAAGCTGTGGAGAAACTTAAAATGTCTGGCCTCTCAGGGCAAGTGGTTTTCCACCAACTTGATGTGGCTGACCCTGCTAGTATTGCTTCTCTGGCCCAATTCATCAAAACACAGTTCGGGAAACTCGATATCCTGGTCAACAATGCCGGGATTGGTGGAGTTATAGTTGATACTGATGGTTATAAAGCTGCATCTGGATCTGCTGCTGAAGGAGGACAGATTGATGTGAGAAAGTTCATGACTGAAACTTATGAGTCAACAGAAGAATGCTTGCAAATCAATTATTATGGTGCTAAAAGAACAGCTGAAGCACTTATTCCACTCCTCCAGCTATCCGCTTCACCAAGAATTGTTAATGTTGCATCCTCTATGGGGAAGTTGGAGAACATACCAAGTGATCGGGTGAAAGAAGTTCTTAGTACTGATGCCGAGGACCTGAGCGAAGAGAGTGTAGATGAAATATTGACAGAGTTTCTAAAAGACTTCAAGGAGGGTTCACTTGAAATCAAGGGTTGGCCTGCTTCTTTCCTGTCAGGCTATACAGTCTCAAAAGCAGCACTGAATGCATATACGCGTATTTTAGCCAAGAAGTTTCCTGGTTTTCGTGTCAACTCTGTCTGCCCTGGCTATGTCAAAACAGATATAAACTTCAATACTGGCGTATTGCCTGTTGAAGAAGGCGCTGCAAGTGTAGTGAAGTTAGCATTGCTGCCTGATGATGGCCCTACAGGCCAATTCTTTGTCCGTTCTGAAGTATCACGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

300

Amino Acids

32.18

Weight (kDa)

5.24

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 172 1.5e-27 short chain dehydrogenase
KR PF08659 10 - 95 7.5e-07 KR domain
adh_short_C2 PF13561 15 - 172 2.7e-18 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 223 - 260 5.9e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AccII CGCG 1 cut(s) 706
AciI CCGC 1 cut(s) 468
AclWI GGATC 2 cut(s) 46, 337
AcoI YGGCCR 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 360, 459
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 504, 851
AflIII ACRYGT 1 cut(s) 704
AgsI TTSAA 5 cut(s) 134, 619, 635, 784, 806
AjnI CCWGG 3 cut(s) 264, 727, 754
AluBI AGCT 4 cut(s) 137, 320, 437, 463
AluI AGCT 4 cut(s) 137, 320, 437, 463
Alw26I GTCTC 2 cut(s) 56, 682
AlwI GGATC 2 cut(s) 46, 337
AoxI GGCC 7 cut(s) 78, 127, 160, 225, 647, 853, 862
ApeKI GCWGC 5 cut(s) 320, 335, 686, 815, 841
AspLEI GCGC 1 cut(s) 815
AspS9I GGNCC 4 cut(s) 127, 226, 565, 854
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 465, 547
AvaII GGWCC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 80
BbvI GCAGC 5 cut(s) 307, 322, 698, 802, 828
BccI CCATC 2 cut(s) 302, 845
BciT130I CCWGG 3 cut(s) 266, 729, 756
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 56, 682
BfaI CTAG 2 cut(s) 111, 210
BfmI CTRYAG 1 cut(s) 858
BfoI RGCGCY 1 cut(s) 816
BglI GCCNNNNNGGC 1 cut(s) 861
BisI GCNGC 5 cut(s) 321, 336, 687, 816, 842
BlsI GCNGC 5 cut(s) 322, 337, 688, 817, 843
BmcAI AGTACT 1 cut(s) 553
Bme1390I CCNGG 4 cut(s) 266, 280, 729, 756
Bme18I GGWCC 1 cut(s) 565
BmgT120I GGNCC 4 cut(s) 127, 226, 565, 854
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 4 cut(s) 266, 280, 729, 756
BmsI GCATC 3 cut(s) 332, 503, 547
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 561, 754
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 851
Bse1I ACTGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 836
BseBI CCWGG 3 cut(s) 266, 729, 756
BseDI CCNNGG 2 cut(s) 561, 754
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 504, 851
BseMI GCAATG 1 cut(s) 836
BseMII CTCAG 2 cut(s) 180, 560
BseNI ACTGG 1 cut(s) 793
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 5 cut(s) 307, 322, 698, 802, 828
Bsh1236I CGCG 1 cut(s) 706
BshFI GGCC 7 cut(s) 80, 129, 162, 227, 649, 855, 864
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 504, 851
BsmAI GTCTC 2 cut(s) 56, 682
BsmI GAATGC 2 cut(s) 404, 700
BsnI GGCC 7 cut(s) 80, 129, 162, 227, 649, 855, 864
Bsp143I GATC 3 cut(s) 38, 329, 529
BspACI CCGC 1 cut(s) 468
BspANI GGCC 7 cut(s) 80, 129, 162, 227, 649, 855, 864
BspCNI CTCAG 2 cut(s) 179, 561
BspFNI CGCG 1 cut(s) 706
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 2 cut(s) 46, 337
BsrDI GCAATG 1 cut(s) 836
BsrI ACTGG 1 cut(s) 793
BssECI CCNNGG 2 cut(s) 561, 754
BssMI GATC 3 cut(s) 38, 329, 529
Bst2UI CCWGG 3 cut(s) 266, 729, 756
Bst4CI ACNGT 4 cut(s) 67, 97, 246, 676
Bst6I CTCTTC 2 cut(s) 116, 570
BstAPI GCANNNNNTGC 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 404, 651
BstDEI CTNAG 4 cut(s) 15, 166, 548, 569
BstF5I GGATG 1 cut(s) 494
BstFNI CGCG 1 cut(s) 706
BstH2I RGCGCY 1 cut(s) 816
BstHHI GCGC 1 cut(s) 815
BstKTI GATC 3 cut(s) 41, 332, 532
BstMAI GTCTC 2 cut(s) 56, 682
BstMBI GATC 3 cut(s) 38, 329, 529
BstMWI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 695, 861
BstNI CCWGG 3 cut(s) 266, 729, 756
BstSCI CCNGG 4 cut(s) 264, 278, 727, 754
BstSFI CTRYAG 1 cut(s) 858
BstUI CGCG 1 cut(s) 706
BstV1I GCAGC 5 cut(s) 307, 322, 698, 802, 828
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 7 cut(s) 80, 129, 162, 227, 649, 855, 864
BtsCI GGATG 1 cut(s) 494
BtsIMutI CAGTG 2 cut(s) 93, 689
Cac8I GCNNGC 2 cut(s) 404, 651
CciI TCATGA 1 cut(s) 369
CfoI GCGC 1 cut(s) 815
Cfr13I GGNCC 4 cut(s) 127, 226, 565, 854
Csp6I GTAC 1 cut(s) 552
CviAII CATG 1 cut(s) 370
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 4 cut(s) 15, 166, 548, 569
DpnI GATC 3 cut(s) 40, 331, 531
DpnII GATC 3 cut(s) 38, 329, 529
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 116, 570
EarI CTCTTC 2 cut(s) 116, 570
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 565
Eco57I CTGAAG 2 cut(s) 360, 459
EcoO109I RGGNCCY 2 cut(s) 127, 565
EcoRII CCWGG 3 cut(s) 264, 727, 754
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 700
FaeI CATG 1 cut(s) 373
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FatI CATG 1 cut(s) 369
Fnu4HI GCNGC 5 cut(s) 321, 336, 687, 816, 842
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 5 cut(s) 321, 336, 687, 816, 842
FspBI CTAG 2 cut(s) 111, 210
GlaI GCGC 1 cut(s) 814
GluI GCNGC 5 cut(s) 321, 336, 687, 816, 842
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 816
HaeIII GGCC 7 cut(s) 80, 129, 162, 227, 649, 855, 864
HapII CCGG 1 cut(s) 279
HhaI GCGC 1 cut(s) 815
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 813
HinP1I GCGC 1 cut(s) 813
HincII GTYRAC 3 cut(s) 271, 390, 742
HindII GTYRAC 3 cut(s) 271, 390, 742
HinfI GANTC 5 cut(s) 8, 51, 57, 90, 386
HpaII CCGG 1 cut(s) 279
HphI GGTGA 2 cut(s) 465, 547
Hpy166II GTNNAC 4 cut(s) 271, 390, 629, 742
Hpy188I TCNGA 2 cut(s) 56, 883
Hpy188III TCNNGA 4 cut(s) 61, 250, 327, 370
Hpy8I GTNNAC 4 cut(s) 271, 390, 629, 742
HpyAV CCTTC 2 cut(s) 335, 803
HpyCH4III ACNGT 4 cut(s) 67, 97, 246, 676
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 6 cut(s) 26, 323, 406, 494, 698, 818
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 695, 861
HpyF3I CTNAG 4 cut(s) 15, 166, 548, 569
HpySE526I ACGT 1 cut(s) 892
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 813
Kzo9I GATC 3 cut(s) 38, 329, 529
Lsp1109I GCAGC 5 cut(s) 307, 322, 698, 802, 828
LweI GCATC 3 cut(s) 332, 503, 547
MaeI CTAG 2 cut(s) 111, 210
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 40, 331, 531
MboI GATC 3 cut(s) 38, 329, 529
MboII GAAGA 4 cut(s) 133, 407, 587, 818
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 1 cut(s) 329
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 5 cut(s) 74, 230, 412, 480, 866
MluI ACGCGT 1 cut(s) 704
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 8 cut(s) 12, 117, 173, 338, 467, 508, 556, 616
Mox20I TGGCCA 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 700
MscI TGGCCA 1 cut(s) 80
MseI TTAA 4 cut(s) 104, 150, 486, 898
Msp20I TGGCCA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 4 cut(s) 266, 280, 729, 756
MunI CAATTG 1 cut(s) 74
Mva1269I GAATGC 2 cut(s) 404, 700
MvaI CCWGG 3 cut(s) 266, 729, 756
MvnI CGCG 1 cut(s) 706
MwoI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 695, 861
NciI CCSGG 1 cut(s) 280
NdeII GATC 3 cut(s) 38, 329, 529
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 1 cut(s) 128
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 700
PagI TCATGA 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 2 cut(s) 404, 700
PfeI GAWTC 4 cut(s) 8, 51, 57, 90
PkrI GCNGC 5 cut(s) 322, 337, 688, 817, 843
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 565
PsiI TTATAA 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 565
Psp6I CCWGG 3 cut(s) 264, 727, 754
PspGI CCWGG 3 cut(s) 264, 727, 754
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 4 cut(s) 127, 226, 565, 854
PspPPI RGGWCCY 1 cut(s) 565
PsuI RGATCY 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
SaqAI TTAA 4 cut(s) 104, 150, 486, 898
SatI GCNGC 5 cut(s) 321, 336, 687, 816, 842
Sau3AI GATC 3 cut(s) 38, 329, 529
Sau96I GGNCC 4 cut(s) 127, 226, 565, 854
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 4 cut(s) 266, 280, 729, 756
SetI ASST 7 cut(s) 23, 139, 322, 439, 465, 570, 895
SfaNI GCATC 3 cut(s) 332, 503, 547
SfcI CTRYAG 1 cut(s) 858
SfiI GGCCNNNNNGGCC 1 cut(s) 861
SinI GGWCC 1 cut(s) 565
Sse9I AATT 5 cut(s) 74, 230, 412, 480, 866
SsiI CCGC 1 cut(s) 468
SspI AATATT 1 cut(s) 594
SspMI CTAG 2 cut(s) 111, 210
StyD4I CCNGG 4 cut(s) 264, 278, 727, 754
TaaI ACNGT 4 cut(s) 67, 97, 246, 676
TaiI ACGT 1 cut(s) 895
TaqI TCGA 2 cut(s) 60, 258
TasI AATT 5 cut(s) 74, 230, 412, 480, 866
TatI WGTACW 1 cut(s) 551
TfiI GAWTC 4 cut(s) 8, 51, 57, 90
Tru1I TTAA 4 cut(s) 104, 150, 486, 898
Tru9I TTAA 4 cut(s) 104, 150, 486, 898
TscAI CASTG 2 cut(s) 100, 696
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 5 cut(s) 320, 335, 686, 815, 841
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 223, 358, 603
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 2 cut(s) 100, 696
VpaK11BI GGWCC 1 cut(s) 565
XspI CTAG 2 cut(s) 111, 210
ZrmI AGTACT 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.