Prupe.1G171500_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000170
Physical Location & Seq
Forward (+)
14278291 .. 14280400
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G171500.1

Sequence Viewer

Length: 906 bp
ATGGCAGAAGCAGCAAAGAGTCAGAGGTATGCAGTGGTCACAGGAGCTAATAAAGGGGTTGGATTTGCCACAGTTAGGCAGTTGGCTTCAAATGGGGTCATAGTTGTGTTAACTGCGAGAGACGAGAAAAGGGGTCTTGAAGCTGTTGATAAATTGAAAGAGTTTGGCCTCTCAGACCTTGTGGTTTTTCATCAGCTTGATGTAACAGACGCTGCAAGCATTGCTTCCCTTGCAGATTTTGTCAAAGCCCAATTTGGGAAACTAGATATCTTGGTAAACAATGCAGGGGTTGGTGGAACCATTGTAGACCCTGAAGCTATGAGAGCTGCTGCAGCTTCAGGTCTTGGTAAGGAAGGAGTAGAAGTCAACTGGACTGAATTAATGACTCAAACGTATGAGTTAGCTGAAGAATGTGTGAAAACAAACTATTTTGGTGCCAAGAAAATGACCAAAGCACTCCTTCCCCTCCTCCAGCTTTCTGATACACCAAGAATTATCAATCTTACTTCTACCGTGGCAGCATTAAAGAATATCCCAAATGAATGGGCCAAAGGGGTGTTAAGTGATGCTGAGAAACTTACAGAAGAGAGAATAGATGATGTTTTGAATGAGTTTCTCAAAGACTTCAAAGAAGAAATGCTAGAAACCAAAGGCTGGCCTCCTTCCCTCTCTGCCTATATACTTTCAAAAGCAACACTGAATGCATACACTAGATTCGTGGCCAAGAAGTACCCGAATTTCTTCGTCAACTGTGTCTGCCCTGGATTTGTCAAAACAGATATGACCTTCAATGCTGGCATATTAACCATTGATGAAGGTGCTGAAAGTGTTGTGAGGTTGGCAATGCTTACCAAGGGTAGTCCTTCTGGCCTCTACTTCCTTTTAAAAGAGGTCTCATCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

302

Amino Acids

32.67

Weight (kDa)

5.35

Isoelectric Point (pI)

17.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 654
AccI GTMKAC 1 cut(s) 306
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 1 cut(s) 736
AcuI CTGAAG 3 cut(s) 321, 333, 426
AfaI GTAC 1 cut(s) 731
AfiI CCNNNNNNNGG 3 cut(s) 75, 255, 654
AgsI TTSAA 7 cut(s) 90, 140, 157, 607, 628, 687, 790
AjnI CCWGG 1 cut(s) 760
AluBI AGCT 8 cut(s) 47, 143, 196, 317, 326, 335, 404, 475
AluI AGCT 8 cut(s) 47, 143, 196, 317, 326, 335, 404, 475
Alw26I GTCTC 2 cut(s) 114, 898
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 5 cut(s) 166, 546, 656, 720, 868
ApeKI GCWGC 6 cut(s) 11, 212, 326, 329, 332, 518
ApoI RAATTY 1 cut(s) 736
AseI ATTAAT 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 740
AspS9I GGNCC 1 cut(s) 546
BalI TGGCCA 1 cut(s) 722
BanI GGYRCC 1 cut(s) 434
BbvI GCAGC 6 cut(s) 23, 199, 313, 316, 344, 530
BciT130I CCWGG 1 cut(s) 762
BcoDI GTCTC 2 cut(s) 114, 898
BfaI CTAG 3 cut(s) 263, 641, 711
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 6 cut(s) 12, 213, 327, 330, 333, 519
BlsI GCNGC 6 cut(s) 13, 214, 328, 331, 334, 520
Bme1390I CCNGG 1 cut(s) 762
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 2 cut(s) 298, 436
BmrFI CCNGG 1 cut(s) 762
BmsI GCATC 1 cut(s) 556
BpmI CTGGAG 1 cut(s) 455
BsaI GGTCTC 1 cut(s) 898
BsaJI CCNNGG 3 cut(s) 513, 760, 852
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 255, 654
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 2 cut(s) 219, 849
BseBI CCWGG 1 cut(s) 762
BseDI CCNNGG 3 cut(s) 513, 760, 852
BseLI CCNNNNNNNGG 3 cut(s) 75, 255, 654
BseMI GCAATG 2 cut(s) 219, 849
BseMII CTCAG 2 cut(s) 186, 561
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 6 cut(s) 23, 199, 313, 316, 344, 530
BshFI GGCC 5 cut(s) 168, 548, 658, 722, 870
BshNI GGYRCC 1 cut(s) 434
BslI CCNNNNNNNGG 3 cut(s) 75, 255, 654
BsmAI GTCTC 2 cut(s) 114, 898
BsmBI CGTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 5 cut(s) 168, 548, 658, 722, 870
Bso31I GGTCTC 1 cut(s) 898
BspANI GGCC 5 cut(s) 168, 548, 658, 722, 870
BspCNI CTCAG 2 cut(s) 185, 562
BspLI GGNNCC 2 cut(s) 298, 436
BspMAI CTGCAG 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 898
BsrDI GCAATG 2 cut(s) 219, 849
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 513, 760, 852
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 1 cut(s) 762
Bst4CI ACNGT 3 cut(s) 73, 514, 752
Bst6I CTCTTC 1 cut(s) 579
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 217, 656, 796
BstDEI CTNAG 2 cut(s) 172, 570
BstDSI CCRYGG 1 cut(s) 513
BstMAI GTCTC 2 cut(s) 114, 898
BstMWI GCNNNNNNNGC 5 cut(s) 11, 221, 230, 323, 332
BstNI CCWGG 1 cut(s) 762
BstSCI CCNGG 1 cut(s) 760
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 6 cut(s) 23, 199, 313, 316, 344, 530
BstXI CCANNNNNNTGG 1 cut(s) 543
BsuRI GGCC 5 cut(s) 168, 548, 658, 722, 870
BtgI CCRYGG 1 cut(s) 513
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 695
Cac8I GCNNGC 3 cut(s) 217, 656, 796
CaiI CAGNNNCTG 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 546
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 730
CviQI GTAC 1 cut(s) 730
DdeI CTNAG 2 cut(s) 172, 570
DraI TTTAAA 1 cut(s) 885
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 852
Eco31I GGTCTC 1 cut(s) 898
Eco32I GATATC 1 cut(s) 268
Eco57I CTGAAG 3 cut(s) 321, 333, 426
EcoRII CCWGG 1 cut(s) 760
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 852
EcoT22I ATGCAT 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 852
Esp3I CGTCTC 1 cut(s) 114
FaiI YATR 9 cut(s) 30, 101, 320, 396, 678, 680, 706, 782, 800
FalI AAGNNNNNCTT 4 cut(s) 208, 240, 444, 476
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 6 cut(s) 12, 213, 327, 330, 333, 519
Fsp4HI GCNGC 6 cut(s) 12, 213, 327, 330, 333, 519
FspBI CTAG 3 cut(s) 263, 641, 711
GluI GCNGC 6 cut(s) 12, 213, 327, 330, 333, 519
GsuI CTGGAG 1 cut(s) 455
HaeIII GGCC 5 cut(s) 168, 548, 658, 722, 870
HgaI GACGC 1 cut(s) 218
HincII GTYRAC 3 cut(s) 111, 367, 748
HindII GTYRAC 3 cut(s) 111, 367, 748
HinfI GANTC 3 cut(s) 19, 385, 714
HpaI GTTAAC 1 cut(s) 111
Hpy166II GTNNAC 5 cut(s) 111, 277, 307, 367, 748
Hpy188I TCNGA 3 cut(s) 24, 175, 481
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 5 cut(s) 111, 277, 307, 367, 748
HpyAV CCTTC 6 cut(s) 347, 470, 672, 796, 809, 873
HpyCH4III ACNGT 3 cut(s) 73, 514, 752
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 6 cut(s) 32, 215, 233, 284, 332, 704
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 221, 230, 323, 332
HpyF3I CTNAG 2 cut(s) 172, 570
HpySE526I ACGT 1 cut(s) 392
KspAI GTTAAC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 6 cut(s) 23, 199, 313, 316, 344, 530
LweI GCATC 1 cut(s) 556
MaeI CTAG 3 cut(s) 263, 641, 711
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 2 cut(s) 37, 202
MboII GAAGA 4 cut(s) 419, 596, 644, 733
MlsI TGGCCA 1 cut(s) 722
MluCI AATT 5 cut(s) 152, 251, 377, 492, 736
MluNI TGGCCA 1 cut(s) 722
MlyI GAGTC 2 cut(s) 28, 379
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 9 cut(s) 18, 179, 476, 479, 669, 677, 828, 881, 883
Mox20I TGGCCA 1 cut(s) 722
Mph1103I ATGCAT 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 740
MscI TGGCCA 1 cut(s) 722
MseI TTAA 6 cut(s) 110, 380, 524, 560, 803, 884
MslI CAYNNNNRTG 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 722
MspR9I CCNGG 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 706
MvaI CCWGG 1 cut(s) 762
MwoI GCNNNNNNNGC 5 cut(s) 11, 221, 230, 323, 332
NlaIV GGNNCC 2 cut(s) 298, 436
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 706
PctI GAATGC 1 cut(s) 706
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 1 cut(s) 714
PflMI CCANNNNNTGG 1 cut(s) 654
PkrI GCNGC 6 cut(s) 13, 214, 328, 331, 334, 520
PleI GAGTC 2 cut(s) 27, 379
PpsI GAGTC 2 cut(s) 27, 379
PshBI ATTAAT 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 760
PspGI CCWGG 1 cut(s) 760
PspN4I GGNNCC 2 cut(s) 298, 436
PspPI GGNCC 1 cut(s) 546
PstI CTGCAG 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 731
RsaNI GTAC 1 cut(s) 730
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 6 cut(s) 110, 380, 524, 560, 803, 884
SatI GCNGC 6 cut(s) 12, 213, 327, 330, 333, 519
Sau96I GGNCC 1 cut(s) 546
SchI GAGTC 2 cut(s) 28, 379
ScrFI CCNGG 1 cut(s) 762
SfaNI GCATC 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 5 cut(s) 152, 251, 377, 492, 736
SspMI CTAG 3 cut(s) 263, 641, 711
StyD4I CCNGG 1 cut(s) 760
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 3 cut(s) 73, 514, 752
TaiI ACGT 1 cut(s) 395
TasI AATT 5 cut(s) 152, 251, 377, 492, 736
TfiI GAWTC 1 cut(s) 714
Tru1I TTAA 6 cut(s) 110, 380, 524, 560, 803, 884
Tru9I TTAA 6 cut(s) 110, 380, 524, 560, 803, 884
TscAI CASTG 2 cut(s) 39, 702
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 6 cut(s) 11, 212, 326, 329, 332, 518
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 179, 555, 828
TspRI CASTG 2 cut(s) 39, 702
Van91I CCANNNNNTGG 1 cut(s) 654
VspI ATTAAT 1 cut(s) 380
XapI RAATTY 1 cut(s) 736
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 740
XspI CTAG 3 cut(s) 263, 641, 711
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.