AT2G24190

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000170
Physical Location & Seq
Reverse (-)
10283621 .. 10285098
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24190.1

Sequence Viewer

Length: 891 bp
ATGGCTGAGGAATCACCAAGATATGCTATAGTTACTGGAGGGAATAGAGGAATTGGATTTGAGATATGCAGACAATTAGCAAACAAAGGGATTAGGGTTATTTTGACATCTAGAGATGAGAAACAAGGGCTTGAAGCTGTTGAGACATTGAAGAAAGAGCTTGAGATTTCTGATCAAAGCATTGTCTTTCATCAGCTTGATGTCTCTGATCCTGTTAGTGTCACTTCTCTTGCTGAGTTTGTGAAAACCCATTTCGGAAAACTCGATATCTTGATCAATAATGCTGGGGTTGGTGGTGTAATCACTGATGTTGATGCTTTAAGAGCTGGGACAGGGAAAGAAGGTTTCAAGTGGGAGGAAACTATCACTGAGACTTATGAGCTAGCTGAGGAATGCATAAAGATTAACTATTATGGACCAAAGAGAATGTGTGAGGCGTTTATTCCACTTTTGCAGTTATCTGATTCTCCAAGAATCATTAACGTATCATCCTTCATGGGTCAAGTAAAGAATTTAGTAAACGAATGGGCAAAAGGGATCCTGAGTGACGCAGAGAATCTAACGGAGGTAAGAATTGACCAAGTGATCAACCAACTTCTCAATGATCTGAAAGAAGATACGGCTAAGACAAAATATTGGGCTAAAGTCATGTCGGCTTACGTTGTTTCGAAAGCCGGTTTGAATGCTTACACGAGGATCTTAGCGAAGAAACATCCCGAGATTCGCGTTAACTCGGTTTGTCCTGGATTTGTTAAGACTGATATGAATTTTAAAACTGGAATTTTATCTGTGGAAGAAGGAGCATCAAGTCCTGTGAGGTTAGCTTTGCTTCCACATCAAGAATCTCCTTCTGGTTGCTTCTTTGATCGCAAACAAGTTTCAGAGTTCTGA

Protein Analysis

296

Amino Acids

32.85

Weight (kDa)

5.58

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 171 1.2e-28 short chain dehydrogenase
KR PF08659 10 - 97 1.8e-09 KR domain
Epimerase PF01370 10 - 102 8.6e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 15 - 169 1.9e-19 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 213 - 256 1.3e-08 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 214 - 256 6.6e-08 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 726
AclWI GGATC 4 cut(s) 203, 532, 545, 704
AcsI RAATTY 3 cut(s) 511, 766, 780
AgsI TTSAA 4 cut(s) 134, 151, 349, 682
AjnI CCWGG 1 cut(s) 742
AluBI AGCT 7 cut(s) 137, 160, 196, 326, 382, 386, 824
AluI AGCT 7 cut(s) 137, 160, 196, 326, 382, 386, 824
Alw26I GTCTC 3 cut(s) 137, 208, 365
AlwI GGATC 4 cut(s) 203, 532, 545, 704
Ama87I CYCGRG 1 cut(s) 716
ApoI RAATTY 3 cut(s) 511, 766, 780
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 6
AsuII TTCGAA 1 cut(s) 668
AsuNHI GCTAGC 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 1 cut(s) 416
BamHI GGATCC 1 cut(s) 537
BauI CACGAG 1 cut(s) 691
BbvCI CCTCAGC 2 cut(s) 6, 387
BceAI ACGGC 1 cut(s) 636
BciT130I CCWGG 1 cut(s) 744
BclI TGATCA 3 cut(s) 172, 273, 585
BcoDI GTCTC 3 cut(s) 137, 208, 365
BfaI CTAG 2 cut(s) 111, 383
BfmI CTRYAG 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 744
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 539
BmrFI CCNGG 1 cut(s) 744
BmsI GCATC 2 cut(s) 304, 812
BmtI GCTAGC 1 cut(s) 386
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 2 cut(s) 6, 387
Bpu14I TTCGAA 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 674
Bse1I ACTGG 2 cut(s) 40, 781
BseBI CCWGG 1 cut(s) 744
BseGI GGATG 2 cut(s) 488, 712
BseMII CTCAG 4 cut(s) 225, 360, 378, 533
BseNI ACTGG 2 cut(s) 40, 781
BseYI CCCAGC 2 cut(s) 284, 326
Bsh1236I CGCG 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 1 cut(s) 343
BsmAI GTCTC 3 cut(s) 137, 208, 365
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 2 cut(s) 398, 688
BsoBI CYCGRG 1 cut(s) 716
Bsp119I TTCGAA 1 cut(s) 668
Bsp143I GATC 8 cut(s) 172, 208, 273, 537, 585, 604, 696, 865
BspCNI CTCAG 4 cut(s) 226, 361, 379, 534
BspFNI CGCG 1 cut(s) 726
BspLI GGNNCC 1 cut(s) 539
BspOI GCTAGC 1 cut(s) 386
BspPI GGATC 4 cut(s) 203, 532, 545, 704
BspT104I TTCGAA 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 674
BsrI ACTGG 2 cut(s) 40, 781
BssAI RCCGGY 1 cut(s) 674
BssMI GATC 8 cut(s) 172, 208, 273, 537, 585, 604, 696, 865
BssSI CACGAG 1 cut(s) 691
Bst2BI CACGAG 1 cut(s) 691
Bst2UI CCWGG 1 cut(s) 744
BstBI TTCGAA 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 7 cut(s) 6, 234, 369, 387, 542, 624, 700
BstF5I GGATG 2 cut(s) 488, 712
BstFNI CGCG 1 cut(s) 726
BstKTI GATC 8 cut(s) 175, 211, 276, 540, 588, 607, 699, 868
BstMAI GTCTC 3 cut(s) 137, 208, 365
BstMBI GATC 8 cut(s) 172, 208, 273, 537, 585, 604, 696, 865
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 744
BstSCI CCNGG 1 cut(s) 742
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 726
BstX2I RGATCY 2 cut(s) 537, 696
BstYI RGATCY 2 cut(s) 537, 696
BtsCI GGATG 2 cut(s) 488, 712
BtsIMutI CAGTG 2 cut(s) 303, 366
Cac8I GCNNGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 674
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 1 cut(s) 557
CviAII CATG 2 cut(s) 496, 649
DdeI CTNAG 7 cut(s) 6, 234, 369, 387, 542, 624, 700
DpnI GATC 8 cut(s) 174, 210, 275, 539, 587, 606, 698, 867
DpnII GATC 8 cut(s) 172, 208, 273, 537, 585, 604, 696, 865
DraI TTTAAA 1 cut(s) 772
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 416
Eco88I CYCGRG 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 742
EcoRV GATATC 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 398
FaeI CATG 2 cut(s) 499, 652
FaiI YATR 9 cut(s) 24, 29, 67, 378, 398, 414, 497, 650, 764
FaqI GGGAC 1 cut(s) 343
FatI CATG 2 cut(s) 495, 648
FbaI TGATCA 3 cut(s) 172, 273, 585
FokI GGATG 2 cut(s) 475, 699
FspBI CTAG 2 cut(s) 111, 383
GsaI CCCAGC 2 cut(s) 288, 330
GsuI CTGGAG 1 cut(s) 57
HapII CCGG 1 cut(s) 675
HgaI GACGC 1 cut(s) 557
Hin1II CATG 2 cut(s) 499, 652
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 6 cut(s) 11, 464, 474, 556, 721, 842
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 1 cut(s) 675
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 520, 730
Hpy188I TCNGA 7 cut(s) 172, 208, 257, 463, 609, 883, 890
Hpy188III TCNNGA 5 cut(s) 111, 271, 541, 716, 839
Hpy8I GTNNAC 2 cut(s) 520, 730
HpyAV CCTTC 4 cut(s) 335, 502, 791, 858
HpyCH4IV ACGT 2 cut(s) 483, 660
HpyCH4V TGCA 3 cut(s) 69, 396, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 7 cut(s) 6, 234, 369, 387, 542, 624, 700
HpySE526I ACGT 2 cut(s) 483, 660
Hsp92II CATG 2 cut(s) 499, 652
Ksp22I TGATCA 3 cut(s) 172, 273, 585
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 8 cut(s) 172, 208, 273, 537, 585, 604, 696, 865
LmnI GCTCC 1 cut(s) 800
LweI GCATC 2 cut(s) 304, 812
MaeI CTAG 2 cut(s) 111, 383
MaeII ACGT 2 cut(s) 483, 660
MaeIII GTNAC 3 cut(s) 31, 220, 545
MalI GATC 8 cut(s) 174, 210, 275, 539, 587, 606, 698, 867
MboI GATC 8 cut(s) 172, 208, 273, 537, 585, 604, 696, 865
MboII GAAGA 4 cut(s) 163, 626, 718, 806
MflI RGATCY 2 cut(s) 537, 696
MluCI AATT 6 cut(s) 51, 74, 511, 573, 766, 780
MnlI CCTC 8 cut(s) 32, 41, 349, 382, 427, 559, 687, 810
Mph1103I ATGCAT 1 cut(s) 398
MseI TTAA 6 cut(s) 320, 405, 480, 729, 753, 771
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 1 cut(s) 744
Mva1269I GAATGC 2 cut(s) 398, 688
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 8 cut(s) 172, 208, 273, 537, 585, 604, 696, 865
NheI GCTAGC 1 cut(s) 382
NlaIII CATG 2 cut(s) 499, 652
NlaIV GGNNCC 1 cut(s) 539
NmuCI GTSAC 2 cut(s) 220, 545
NsiI ATGCAT 1 cut(s) 398
NspV TTCGAA 1 cut(s) 668
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 2 cut(s) 398, 688
PfeI GAWTC 6 cut(s) 11, 464, 474, 556, 721, 842
PfoI TCCNGGA 1 cut(s) 742
Psp6I CCWGG 1 cut(s) 742
PspFI CCCAGC 2 cut(s) 284, 326
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 1 cut(s) 539
PspPI GGNCC 1 cut(s) 416
PsuI RGATCY 2 cut(s) 537, 696
SaqAI TTAA 6 cut(s) 320, 405, 480, 729, 753, 771
Sau3AI GATC 8 cut(s) 172, 208, 273, 537, 585, 604, 696, 865
Sau96I GGNCC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 744
SfaNI GCATC 2 cut(s) 304, 812
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 668
SinI GGWCC 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 6 cut(s) 51, 74, 511, 573, 766, 780
SspI AATATT 1 cut(s) 635
SspMI CTAG 2 cut(s) 111, 383
StyD4I CCNGG 1 cut(s) 742
TaiI ACGT 2 cut(s) 486, 663
TaqI TCGA 2 cut(s) 264, 668
TasI AATT 6 cut(s) 51, 74, 511, 573, 766, 780
TfiI GAWTC 6 cut(s) 11, 464, 474, 556, 721, 842
Tru1I TTAA 6 cut(s) 320, 405, 480, 729, 753, 771
Tru9I TTAA 6 cut(s) 320, 405, 480, 729, 753, 771
TscAI CASTG 2 cut(s) 310, 373
TseFI GTSAC 2 cut(s) 220, 545
Tsp45I GTSAC 2 cut(s) 220, 545
TspDTI ATGAA 3 cut(s) 179, 484, 779
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 2 cut(s) 310, 373
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 3 cut(s) 511, 766, 780
XbaI TCTAGA 1 cut(s) 110
XspI CTAG 2 cut(s) 111, 383
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.