Rmu_co8260681.1_g000001

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8260681.1
Physical Location & Seq
Reverse (-)
1 .. 367
367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8260681.1_g000001.1.cds

Sequence Viewer

Length: 267 bp
atggcagaatcaactatgaggtatgcagttgttacaggatcaaacaaaggaatcggatttgaaactgtaaggcagttggcctcgactggaatcactgtggtgttaactgctagagatgagaagagagggcttgaagctgttgagaagctgaaagagtctggcctctcgggccaagtagtttttcaccaacttgatgtggctgaccctgctagtattgattctctagcacaattcatcaaaactcagtttgggaagctcgatattttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.58

Weight (kDa)

5.73

Isoelectric Point (pI)

15.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 46
AgsI TTSAA 2 cut(s) 62, 134
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 3 cut(s) 137, 148, 256
AluI AGCT 3 cut(s) 137, 148, 256
AlwI GGATC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 3 cut(s) 78, 160, 169
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 166
BfaI CTAG 3 cut(s) 111, 210, 224
BglI GCCNNNNNGGC 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 91
BshFI GGCC 3 cut(s) 80, 162, 171
BsiHKCI CYCGRG 1 cut(s) 166
BsnI GGCC 3 cut(s) 80, 162, 171
BsoBI CYCGRG 1 cut(s) 166
Bsp143I GATC 1 cut(s) 38
BspANI GGCC 3 cut(s) 80, 162, 171
BspCNI CTCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 91
BssMI GATC 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 67, 97
Bst6I CTCTTC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 243
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 168, 206
BsuRI GGCC 3 cut(s) 80, 162, 171
BtsIMutI CAGTG 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 169
CviJI RGCY 8 cut(s) 80, 130, 137, 148, 162, 171, 200, 256
CviKI_1 RGCY 8 cut(s) 80, 130, 137, 148, 162, 171, 200, 256
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 166
FaiI YATR 2 cut(s) 17, 24
FspBI CTAG 3 cut(s) 111, 210, 224
HaeIII GGCC 3 cut(s) 80, 162, 171
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 5 cut(s) 8, 51, 90, 155, 218
HpaI GTTAAC 1 cut(s) 105
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 105
HpyCH4III ACNGT 2 cut(s) 67, 97
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 206
HpyF3I CTNAG 1 cut(s) 243
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 21, 72, 144, 219
MaeI CTAG 3 cut(s) 111, 210, 224
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 133
MluCI AATT 1 cut(s) 230
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 4 cut(s) 12, 91, 119, 173
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 168, 206
NdeII GATC 1 cut(s) 38
OliI CACNNNNGTG 1 cut(s) 98
PfeI GAWTC 4 cut(s) 8, 51, 90, 218
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 104
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 164
SetI ASST 4 cut(s) 23, 139, 150, 258
SfiI GGCCNNNNNGGCC 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 1 cut(s) 230
SspMI CTAG 3 cut(s) 111, 210, 224
TaaI ACNGT 2 cut(s) 67, 97
TaqI TCGA 2 cut(s) 83, 258
TasI AATT 1 cut(s) 230
TfiI GAWTC 4 cut(s) 8, 51, 90, 218
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 223
TspRI CASTG 1 cut(s) 100
XspI CTAG 3 cut(s) 111, 210, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.