Rmu_sc0000687.1_g000019

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000687.1
OG0000170
Physical Location & Seq
Forward (+)
66771 .. 67859
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000687.1_g000019.1.cds

Sequence Viewer

Length: 645 bp
atggcagaagcaacaaagaggtatgcagttgttacaggatcaaacaaaggaattggattcgaaactgtgaggcagttggtcttaaatggaatcactgtggtcttaactgctagagatgagaagaggggacttgaagctgttgagaaactgaaaaagtctggcctctcaggccaagtgattttccaccaacttgatgtggctgaccctgctagtattgctgctttggcacaattcatcaaaacccagttcgggaagctcgatatcttggtgaacaatgcagggattggtggatccataattgatgctgatggtgctaaagatgcagttgcagctggaggacaaattgattggcaaaaactggactacaaggagggttcacttgaaagcaagggctggccttcttctatgtcaggctatacagtttccaaaacagcactaaatgcatatacaaggattctagccaagaagtaccccggttttcgtgtcaactgtgtctgccccggctatgtcaaaacagatttgaacttcaatgccggtgtcgtgcctgttgaagaaggtgctgcaaattctgtaaggttagcactgctgcccagtgatggcccttccggccaattctttgttcggtctgaaattagcatctactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

214

Amino Acids

22.75

Weight (kDa)

8.77

Isoelectric Point (pI)

24.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 46, 285, 298
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 1 cut(s) 565
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 2 cut(s) 249, 596
AgsI TTSAA 5 cut(s) 134, 383, 523, 529, 551
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AluBI AGCT 3 cut(s) 137, 256, 332
AluI AGCT 3 cut(s) 137, 256, 332
AlwI GGATC 3 cut(s) 46, 285, 298
AoxI GGCC 5 cut(s) 160, 169, 395, 598, 607
ApeKI GCWGC 4 cut(s) 218, 329, 560, 586
ApoI RAATTY 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 599
AsuC2I CCSGG 2 cut(s) 474, 501
AsuHPI GGTGA 1 cut(s) 280
AsuII TTCGAA 1 cut(s) 60
BamHI GGATCC 1 cut(s) 290
BbvI GCAGC 4 cut(s) 205, 341, 547, 573
BccI CCATC 2 cut(s) 302, 590
BcnI CCSGG 2 cut(s) 474, 501
BfaI CTAG 3 cut(s) 111, 210, 458
BglI GCCNNNNNGGC 2 cut(s) 168, 606
BisI GCNGC 4 cut(s) 219, 330, 561, 587
BlsI GCNGC 4 cut(s) 220, 331, 562, 588
Bme1390I CCNGG 2 cut(s) 474, 501
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 474, 501
BmrI ACTGGG 2 cut(s) 238, 585
BmsI GCATC 2 cut(s) 292, 310
BmuI ACTGGG 2 cut(s) 238, 585
BpmI CTGGAG 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 60
BpuMI CCSGG 2 cut(s) 474, 501
BsaJI CCNNGG 2 cut(s) 472, 499
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 596
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 3 cut(s) 244, 363, 591
BseDI CCNNGG 2 cut(s) 472, 499
BseLI CCNNNNNNNGG 2 cut(s) 249, 596
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 3 cut(s) 244, 363, 591
BseXI GCAGC 4 cut(s) 205, 341, 547, 573
BshFI GGCC 5 cut(s) 162, 171, 397, 600, 609
BsiSI CCGG 4 cut(s) 474, 501, 534, 606
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 249, 596
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 5 cut(s) 162, 171, 397, 600, 609
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 38, 290
BspANI GGCC 5 cut(s) 162, 171, 397, 600, 609
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 3 cut(s) 46, 285, 298
BspT104I TTCGAA 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 3 cut(s) 244, 363, 591
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 472, 499
BssMI GATC 2 cut(s) 38, 290
Bst4CI ACNGT 4 cut(s) 67, 97, 421, 491
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 166
BstKTI GATC 2 cut(s) 41, 293
BstMBI GATC 2 cut(s) 38, 290
BstMWI GCNNNNNNNGC 9 cut(s) 168, 206, 215, 224, 311, 320, 329, 440, 606
BstSCI CCNGG 2 cut(s) 472, 499
BstV1I GCAGC 4 cut(s) 205, 341, 547, 573
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 5 cut(s) 162, 171, 397, 600, 609
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 3 cut(s) 93, 581, 598
Cac8I GCNNGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 599
Csp6I GTAC 1 cut(s) 469
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 1 cut(s) 166
DpnI GATC 2 cut(s) 40, 292
DpnII GATC 2 cut(s) 38, 290
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 262
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 445
FaiI YATR 7 cut(s) 24, 296, 407, 417, 445, 447, 507
FaqI GGGAC 1 cut(s) 141
Fnu4HI GCNGC 4 cut(s) 219, 330, 561, 587
Fsp4HI GCNGC 4 cut(s) 219, 330, 561, 587
FspBI CTAG 3 cut(s) 111, 210, 458
GluI GCNGC 4 cut(s) 219, 330, 561, 587
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 5 cut(s) 162, 171, 397, 600, 609
HapII CCGG 4 cut(s) 474, 501, 534, 606
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 3 cut(s) 57, 90, 454
HpaII CCGG 4 cut(s) 474, 501, 534, 606
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 3 cut(s) 271, 377, 487
Hpy188I TCNGA 1 cut(s) 628
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 3 cut(s) 271, 377, 487
HpyAV CCTTC 3 cut(s) 408, 548, 612
HpyCH4III ACNGT 4 cut(s) 67, 97, 421, 491
HpyCH4V TGCA 6 cut(s) 26, 278, 323, 329, 443, 563
HpyF10VI GCNNNNNNNGC 9 cut(s) 168, 206, 215, 224, 311, 320, 329, 440, 606
HpyF3I CTNAG 1 cut(s) 166
Kzo9I GATC 2 cut(s) 38, 290
Lsp1109I GCAGC 4 cut(s) 205, 341, 547, 573
LweI GCATC 2 cut(s) 292, 310
MaeI CTAG 3 cut(s) 111, 210, 458
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 292
MboI GATC 2 cut(s) 38, 290
MboII GAAGA 3 cut(s) 133, 393, 563
MflI RGATCY 1 cut(s) 290
MluCI AATT 7 cut(s) 51, 230, 297, 342, 565, 611, 630
MnlI CCTC 6 cut(s) 12, 63, 117, 173, 329, 364
Mph1103I ATGCAT 1 cut(s) 445
MseI TTAA 2 cut(s) 83, 104
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 4 cut(s) 474, 501, 534, 606
MspR9I CCNGG 2 cut(s) 474, 501
MwoI GCNNNNNNNGC 9 cut(s) 168, 206, 215, 224, 311, 320, 329, 440, 606
NciI CCSGG 2 cut(s) 474, 501
NdeII GATC 2 cut(s) 38, 290
NlaIV GGNNCC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 445
NspV TTCGAA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 3 cut(s) 57, 90, 454
PkrI GCNGC 4 cut(s) 220, 331, 562, 588
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 599
PsuI RGATCY 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
SaqAI TTAA 2 cut(s) 83, 104
SatI GCNGC 4 cut(s) 219, 330, 561, 587
Sau3AI GATC 2 cut(s) 38, 290
Sau96I GGNCC 1 cut(s) 599
ScrFI CCNGG 2 cut(s) 474, 501
SetI ASST 6 cut(s) 23, 139, 258, 334, 559, 578
SfaNI GCATC 2 cut(s) 292, 310
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 606
SfuI TTCGAA 1 cut(s) 60
Sse9I AATT 7 cut(s) 51, 230, 297, 342, 565, 611, 630
SspMI CTAG 3 cut(s) 111, 210, 458
StyD4I CCNGG 2 cut(s) 472, 499
TaaI ACNGT 4 cut(s) 67, 97, 421, 491
TaqI TCGA 2 cut(s) 60, 258
TaqII GACCGA 1 cut(s) 612
TasI AATT 7 cut(s) 51, 230, 297, 342, 565, 611, 630
TfiI GAWTC 3 cut(s) 57, 90, 454
Tru1I TTAA 2 cut(s) 83, 104
Tru9I TTAA 2 cut(s) 83, 104
TscAI CASTG 3 cut(s) 100, 588, 598
TseI GCWGC 4 cut(s) 218, 329, 560, 586
TspDTI ATGAA 1 cut(s) 223
TspRI CASTG 3 cut(s) 100, 588, 598
XapI RAATTY 1 cut(s) 565
XspI CTAG 3 cut(s) 111, 210, 458
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.