Rh1DG244800

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000170
Physical Location & Seq
Forward (+)
45958979 .. 45960494
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG244800.1

Sequence Viewer

Length: 897 bp
ATGGCAGAATCAACCAAAAGGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTCGAAACTGTAAGGCAGTTAGCCTCAAAGGGAATCACTGTGGTCTTAACTGCTAGAGATGAGAAGAGGGGCCTTGAAGCTGTTGAGAAACTTATGGAGTCTGGCCTCTCAGGCCAAGTTGTTTTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTACTTCTCTGGCACAATTTATCAAAACTCAGTTTGGAAAACTCGATATTTTGGTTAACAATGCAGGGATTTTAGGGGCTATAGTTGATGCTGATGGTCTTAAAGATGCAATTGCATCTGGTGCTGGACCAGGACAGATTGATTGGAAAAAGTTGTTGACTGAAACTTACGGGTTAACAGAAGAATGCTTGCAAATCAATTATTATGGAGCTAAAAGAACAGCTGAAGCACTAATTCCACTCCTCCAGCTATCTGATTCACCAAGGATTGTTAATGTTTCATCCGGTTCGGGGAAGTTAAAGAACATACCAAGTGATCGAGTGAAAGGAGTTCTTAGTACTGATGTCGAGAACCTAAGCCAAGAGAGTGTAGATGAAATAGTGACAGAGTTTTTAATCGATCTCAAGGAGAGTTTACTTGAAAGCAAGGGTTGGCCTTCTGTGATGTCAGGCTATACAGTCTCAAAAGCAGCAATGAATGCATATACAAGGATTCTAGCCAAGAAGTACCCCGCTTTTCGTGTCAACTCTGTCTGCCCTGGCTTTGTCAAAACAGATATTAACTTAAATAGCGGCTTCATACCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTAATGATGGCCACACAGGCCAATTCTTTTCTCTGTCTGTAGTGCAAAGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

298

Amino Acids

31.86

Weight (kDa)

5.4

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 172 9.7e-27 short chain dehydrogenase
KR PF08659 10 - 97 3.3e-07 KR domain
adh_short_C2 PF13561 15 - 169 6.1e-18 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 212 - 259 3.2e-07 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 219 - 259 3.2e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 726, 786
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 850
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 553, 722
AfiI CCNNNNNNNGG 2 cut(s) 504, 848
AgsI TTSAA 3 cut(s) 134, 635, 803
AjnI CCWGG 2 cut(s) 343, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 4 cut(s) 137, 425, 437, 463
AluI AGCT 4 cut(s) 137, 425, 437, 463
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 1 cut(s) 46
AoxI GGCC 6 cut(s) 127, 160, 169, 647, 850, 859
ApeKI GCWGC 3 cut(s) 683, 812, 838
ApoI RAATTY 1 cut(s) 826
AspS9I GGNCC 2 cut(s) 127, 341
AsuHPI GGTGA 2 cut(s) 176, 465
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 852
BbvI GCAGC 3 cut(s) 695, 799, 825
BccI CCATC 2 cut(s) 302, 842
BciT130I CCWGG 2 cut(s) 345, 753
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 3 cut(s) 111, 210, 710
BfmI CTRYAG 2 cut(s) 294, 879
BglI GCCNNNNNGGC 2 cut(s) 168, 858
BisI GCNGC 4 cut(s) 684, 787, 813, 839
BlsI GCNGC 4 cut(s) 685, 788, 814, 840
BmcAI AGTACT 1 cut(s) 553
Bme1390I CCNGG 2 cut(s) 345, 753
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 127, 341
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 2 cut(s) 345, 753
BmsI GCATC 3 cut(s) 292, 310, 338
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 602
Bsa29I ATCGAT 1 cut(s) 612
BsaJI CCNNGG 2 cut(s) 476, 751
BsaWI WCCGGW 1 cut(s) 497
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 848
Bse3DI GCAATG 2 cut(s) 693, 833
BseBI CCWGG 2 cut(s) 345, 753
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 476, 751
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 504, 848
BseMI GCAATG 2 cut(s) 693, 833
BseMII CTCAG 2 cut(s) 180, 257
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 3 cut(s) 695, 799, 825
BshFI GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
BshVI ATCGAT 1 cut(s) 612
BsiSI CCGG 1 cut(s) 498
BslI CCNNNNNNNGG 2 cut(s) 504, 848
BsmAI GTCTC 1 cut(s) 679
BsmI GAATGC 2 cut(s) 404, 697
BsnI GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 38, 529, 613
BspACI CCGC 2 cut(s) 726, 786
BspANI GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
BspCNI CTCAG 2 cut(s) 179, 256
BspDI ATCGAT 1 cut(s) 612
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 2 cut(s) 693, 833
BssECI CCNNGG 2 cut(s) 476, 751
BssMI GATC 3 cut(s) 38, 529, 613
BssT1I CCWWGG 1 cut(s) 476
Bst2UI CCWGG 2 cut(s) 345, 753
Bst4CI ACNGT 3 cut(s) 67, 97, 673
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 2 cut(s) 335, 692
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 4 cut(s) 166, 243, 548, 569
BstF5I GGATG 1 cut(s) 494
BstKTI GATC 3 cut(s) 41, 532, 616
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 3 cut(s) 38, 529, 613
BstMWI GCNNNNNNNGC 5 cut(s) 168, 206, 335, 692, 858
BstNI CCWGG 2 cut(s) 345, 753
BstSCI CCNGG 2 cut(s) 343, 751
BstSFI CTRYAG 2 cut(s) 294, 879
BstV1I GCAGC 3 cut(s) 695, 799, 825
Bsu15I ATCGAT 1 cut(s) 612
BsuRI GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
BsuTUI ATCGAT 1 cut(s) 612
BtsCI GGATG 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 127, 341
ClaI ATCGAT 1 cut(s) 612
Csp6I GTAC 2 cut(s) 552, 721
CviQI GTAC 2 cut(s) 552, 721
DdeI CTNAG 4 cut(s) 166, 243, 548, 569
DpnI GATC 3 cut(s) 40, 531, 615
DpnII GATC 3 cut(s) 38, 529, 613
EaeI YGGCCR 1 cut(s) 850
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 343, 751
EcoT14I CCWWGG 1 cut(s) 476
EcoT22I ATGCAT 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 476
FaiI YATR 9 cut(s) 24, 152, 296, 420, 521, 669, 697, 699, 794
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FauI CCCGC 1 cut(s) 733
Fnu4HI GCNGC 4 cut(s) 684, 787, 813, 839
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 684, 787, 813, 839
FspBI CTAG 3 cut(s) 111, 210, 710
GluI GCNGC 4 cut(s) 684, 787, 813, 839
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 6 cut(s) 129, 162, 171, 649, 852, 861
HapII CCGG 1 cut(s) 498
HincII GTYRAC 4 cut(s) 271, 372, 390, 739
HindII GTYRAC 4 cut(s) 271, 372, 390, 739
HinfI GANTC 7 cut(s) 8, 51, 57, 90, 155, 470, 706
HpaI GTTAAC 2 cut(s) 271, 390
HpaII CCGG 1 cut(s) 498
HphI GGTGA 2 cut(s) 176, 465
Hpy166II GTNNAC 5 cut(s) 271, 372, 390, 629, 739
Hpy188I TCNGA 2 cut(s) 56, 469
Hpy188III TCNNGA 2 cut(s) 562, 823
Hpy8I GTNNAC 5 cut(s) 271, 372, 390, 629, 739
HpyAV CCTTC 2 cut(s) 660, 800
HpyCH4III ACNGT 3 cut(s) 67, 97, 673
HpyCH4V TGCA 8 cut(s) 26, 278, 323, 329, 406, 695, 815, 886
HpyF10VI GCNNNNNNNGC 5 cut(s) 168, 206, 335, 692, 858
HpyF3I CTNAG 4 cut(s) 166, 243, 548, 569
KspAI GTTAAC 2 cut(s) 271, 390
Kzo9I GATC 3 cut(s) 38, 529, 613
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 3 cut(s) 695, 799, 825
LweI GCATC 3 cut(s) 292, 310, 338
MaeI CTAG 3 cut(s) 111, 210, 710
MaeIII GTNAC 2 cut(s) 31, 595
MalI GATC 3 cut(s) 40, 531, 615
MboI GATC 3 cut(s) 38, 529, 613
MboII GAAGA 3 cut(s) 133, 407, 815
MfeI CAATTG 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 6 cut(s) 230, 324, 412, 447, 826, 863
MluNI TGGCCA 1 cut(s) 852
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 4 cut(s) 91, 117, 173, 467
Mox20I TGGCCA 1 cut(s) 852
Mph1103I ATGCAT 1 cut(s) 697
MscI TGGCCA 1 cut(s) 852
MseI TTAA 9 cut(s) 104, 270, 315, 389, 486, 512, 608, 774, 779
Msp20I TGGCCA 1 cut(s) 852
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 2 cut(s) 345, 753
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 404, 697
MvaI CCWGG 2 cut(s) 345, 753
MwoI GCNNNNNNNGC 5 cut(s) 168, 206, 335, 692, 858
NdeII GATC 3 cut(s) 38, 529, 613
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 2 cut(s) 31, 595
NsiI ATGCAT 1 cut(s) 697
NspV TTCGAA 1 cut(s) 60
PctI GAATGC 2 cut(s) 404, 697
PfeI GAWTC 6 cut(s) 8, 51, 57, 90, 470, 706
PkrI GCNGC 4 cut(s) 685, 788, 814, 840
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 343, 751
PspGI CCWGG 2 cut(s) 343, 751
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 2 cut(s) 127, 341
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 2 cut(s) 553, 722
RsaNI GTAC 2 cut(s) 552, 721
SaqAI TTAA 9 cut(s) 104, 270, 315, 389, 486, 512, 608, 774, 779
SatI GCNGC 4 cut(s) 684, 787, 813, 839
Sau3AI GATC 3 cut(s) 38, 529, 613
Sau96I GGNCC 2 cut(s) 127, 341
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 345, 753
SetI ASST 8 cut(s) 23, 139, 427, 439, 465, 570, 799, 811
SfaNI GCATC 3 cut(s) 292, 310, 338
SfcI CTRYAG 2 cut(s) 294, 879
SfiI GGCCNNNNNGGCC 2 cut(s) 168, 858
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 6 cut(s) 230, 324, 412, 447, 826, 863
SsiI CCGC 2 cut(s) 726, 786
SspMI CTAG 3 cut(s) 111, 210, 710
StyD4I CCNGG 2 cut(s) 343, 751
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 3 cut(s) 67, 97, 673
TaqI TCGA 5 cut(s) 60, 258, 532, 561, 612
TasI AATT 6 cut(s) 230, 324, 412, 447, 826, 863
TatI WGTACW 1 cut(s) 551
TauI GCSGC 1 cut(s) 789
TfiI GAWTC 6 cut(s) 8, 51, 57, 90, 470, 706
Tru1I TTAA 9 cut(s) 104, 270, 315, 389, 486, 512, 608, 774, 779
Tru9I TTAA 9 cut(s) 104, 270, 315, 389, 486, 512, 608, 774, 779
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 2 cut(s) 31, 595
TseI GCWGC 3 cut(s) 683, 812, 838
Tsp45I GTSAC 2 cut(s) 31, 595
TspDTI ATGAA 4 cut(s) 483, 603, 704, 781
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 1 cut(s) 826
XspI CTAG 3 cut(s) 111, 210, 710
ZrmI AGTACT 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.