pycom01g07840

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000170
Physical Location & Seq
Forward (+)
8826406 .. 8826960
555 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07840.1

Sequence Viewer

Length: 555 bp
ATGCAGGAAGGAACTGATTGGAAGAAAATGATGACTCAAAATTATGAGTTAGCAGAAGAATGCGTGCAAACAAACTATTATGGTGCTAAACGAACAACTGAAGCGCTTATTCCACTCCTCCAATTATCTGATTCACCGAGAATAGTTAACGTTTCATCTTCCTGGGGCAAGTTAAACAATATACCTAGTGACTGGGCTAAAGGAGTTTTCAGTCATGCTGAAAATCGAACAGAAGAGCGAATAGATGAGGTGTTGACTCAGTTTCTAAAAGACGTCAAGGAGGGTTCAATTGAAAGCAAAGGCTGGCCTTCTGTTATGGCTGGCTATATACTCTCAAAGGCAGCAATGAATGCACATACACGTGTCCTAGCCAAGAAGTACGCGGATTTTCGCATCAATTGTCTCTGCCCCGGATTTGTCAAAACTGATATAAACTTCAATGCTGGTAACGTGCCTGTCGAAGAAAGTGCTGCAAGGGTTCTGAAGTTAGCATTTCTTCCCAATGATGGCCCTTCTGGCTTCTTCTTTGTTGAGTCTGAAGTAACAGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

185

Amino Acids

20.55

Weight (kDa)

5.5

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 100 - 149 2.5e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
AccII CGCG 1 cut(s) 383
AciI CCGC 1 cut(s) 383
AclI AACGTT 1 cut(s) 150
AcuI CTGAAG 2 cut(s) 120, 503
AcvI CACGTG 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 1 cut(s) 380
AfeI AGCGCT 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 506
AflIII ACRYGT 2 cut(s) 359, 361
AgsI TTSAA 3 cut(s) 288, 293, 439
AjnI CCWGG 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 407
Aor51HI AGCGCT 1 cut(s) 105
AoxI GGCC 2 cut(s) 305, 508
ApeKI GCWGC 2 cut(s) 341, 470
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 509
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 126
BbrPI CACGTG 1 cut(s) 362
BbvI GCAGC 2 cut(s) 353, 457
BccI CCATC 1 cut(s) 500
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 163
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 407
BfaI CTAG 2 cut(s) 186, 368
BfoI RGCGCY 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 516
BisI GCNGC 2 cut(s) 342, 471
BlsI GCNGC 2 cut(s) 343, 472
Bme1390I CCNGG 2 cut(s) 163, 411
BmgT120I GGNCC 1 cut(s) 509
BmrFI CCNGG 2 cut(s) 163, 411
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 402
BmuI ACTGGG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 162, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 162, 409
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 353, 457
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 2 cut(s) 307, 510
BsiSI CCGG 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 407
BsmI GAATGC 2 cut(s) 65, 355
BsnI GGCC 2 cut(s) 307, 510
BspACI CCGC 1 cut(s) 383
BspANI GGCC 2 cut(s) 307, 510
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 1 cut(s) 383
BspQI GCTCTTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 162, 409
BssNI GRCGYC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 65, 305, 322
BstDEI CTNAG 1 cut(s) 258
BstFNI CGCG 1 cut(s) 383
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 407
BstMWI GCNNNNNNNGC 2 cut(s) 350, 516
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 161, 409
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 2 cut(s) 353, 457
BsuRI GGCC 2 cut(s) 307, 510
Cac8I GCNNGC 3 cut(s) 65, 305, 322
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 509
Csp6I GTAC 1 cut(s) 379
CviAII CATG 1 cut(s) 215
CviJI RGCY 8 cut(s) 197, 303, 307, 320, 324, 371, 510, 519
CviKI_1 RGCY 8 cut(s) 197, 303, 307, 320, 324, 371, 510, 519
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 105
Eco57I CTGAAG 2 cut(s) 120, 503
Eco72I CACGTG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 161
FaeI CATG 1 cut(s) 218
FaiI YATR 9 cut(s) 45, 81, 182, 216, 317, 327, 329, 357, 431
FatI CATG 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 342, 471
Fsp4HI GCNGC 2 cut(s) 342, 471
FspBI CTAG 2 cut(s) 186, 368
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 342, 471
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 2 cut(s) 307, 510
HapII CCGG 1 cut(s) 411
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 1 cut(s) 218
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 2 cut(s) 148, 255
HindII GTYRAC 2 cut(s) 148, 255
HinfI GANTC 4 cut(s) 34, 131, 256, 533
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 1 cut(s) 411
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 148, 255
Hpy188I TCNGA 3 cut(s) 130, 483, 538
Hpy8I GTNNAC 2 cut(s) 148, 255
HpyAV CCTTC 2 cut(s) 318, 522
HpyCH4IV ACGT 4 cut(s) 150, 273, 361, 450
HpyCH4V TGCA 4 cut(s) 4, 67, 353, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 516
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 4 cut(s) 150, 273, 361, 450
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 1 cut(s) 218
HspAI GCGC 1 cut(s) 104
KspAI GTTAAC 1 cut(s) 148
LguI GCTCTTC 1 cut(s) 228
Lsp1109I GCAGC 2 cut(s) 353, 457
LweI GCATC 1 cut(s) 402
MaeI CTAG 2 cut(s) 186, 368
MaeII ACGT 4 cut(s) 150, 273, 361, 450
MaeIII GTNAC 3 cut(s) 188, 446, 541
MboII GAAGA 7 cut(s) 34, 68, 150, 245, 473, 488, 514
MfeI CAATTG 2 cut(s) 288, 397
MluCI AATT 4 cut(s) 40, 122, 288, 397
MlyI GAGTC 3 cut(s) 28, 250, 542
MnlI CCTC 3 cut(s) 128, 241, 274
MseI TTAA 2 cut(s) 147, 173
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 2 cut(s) 163, 411
MunI CAATTG 2 cut(s) 288, 397
Mva1269I GAATGC 2 cut(s) 65, 355
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 2 cut(s) 350, 516
NciI CCSGG 1 cut(s) 411
NlaIII CATG 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PctI GAATGC 2 cut(s) 65, 355
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 343, 472
PleI GAGTC 3 cut(s) 28, 250, 541
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
PpsI GAGTC 3 cut(s) 28, 250, 541
Ppu21I YACGTR 1 cut(s) 362
Psp1406I AACGTT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 161
PspCI CACGTG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 161
PspPI GGNCC 1 cut(s) 509
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 147, 173
SatI GCNGC 2 cut(s) 342, 471
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 3 cut(s) 28, 250, 542
ScrFI CCNGG 2 cut(s) 163, 411
SetI ASST 6 cut(s) 153, 187, 252, 276, 364, 453
SfaNI GCATC 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 4 cut(s) 40, 122, 288, 397
SsiI CCGC 1 cut(s) 383
SspMI CTAG 2 cut(s) 186, 368
StyD4I CCNGG 2 cut(s) 161, 409
TaiI ACGT 4 cut(s) 153, 276, 364, 453
TaqI TCGA 2 cut(s) 226, 459
TasI AATT 4 cut(s) 40, 122, 288, 397
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 2 cut(s) 147, 173
Tru9I TTAA 2 cut(s) 147, 173
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 341, 470
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 144, 362
XspI CTAG 2 cut(s) 186, 368
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.