Rmu_sc0005914.1_g000002

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005914.1
OG0000170
Physical Location & Seq
Reverse (-)
3442 .. 5011
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005914.1_g000002.1.cds

Sequence Viewer

Length: 900 bp
atggcagaaacagtgaagagaaggcatgcagttgttacaggttcaaacaagggggttggatttggaatagtaaagcaactagctacaaatggggtcatgacagtattaactgctagagatgagaagaagggtattgaagctgttgagaaactgaaagagtgttgcctctctaacgttgttgtttttcatcagcttgatgtcacagaccctgatagcatcgcttccctcgcagattttgtcaaaacccattttggaaaactggatatcttggtgaacaatgcagcagtcaatggactcactaacgaacctgaagttttcatagctgcagctgcaaataggggaaaggaaggtgtggacgtccactggagtgattttgcaactcagacatacgagttaggcaaagaatgtctaaaaacaaactactatggcaccaagagaattaccgaagcacttgttcctctccttgagctatcggattcaccaagagtagtcaatattagttctggcgcagggaggttaaagcttataccgaacgagtgggccaaaggggtgttaggtgatgctgagaaacttacagaggagagggtagatgaggttctgaatgagtttctaaaagacttcaaagaagatatgctagaaaccaaaggctggccactttcactttctgcttatatagtctccaaagcttccttgaatgcatacactagaattatggccaagaagtacaaaaatttctgtgtcaattgcgtctgccctggattcgtcaaaacagatatgaccttcaatgcaggcatcttaaccactgatgaagctgctgaaaatgttaccaggctagctgtgtttccaaatggcaatccctccggtatcttcttctttcaacaagaagcatcatccttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

299

Amino Acids

32.77

Weight (kDa)

5.72

Isoelectric Point (pI)

19.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 648
AclI AACGTT 1 cut(s) 174
AcoI YGGCCR 2 cut(s) 650, 714
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 1 cut(s) 725
AfiI CCNNNNNNNGG 1 cut(s) 648
AgsI TTSAA 6 cut(s) 45, 137, 622, 694, 784, 878
AjnI CCWGG 2 cut(s) 754, 827
AleI CACNNNNGTG 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 682
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 3 cut(s) 540, 650, 714
ApeKI GCWGC 5 cut(s) 281, 323, 326, 329, 812
ApoI RAATTY 1 cut(s) 730
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 540
AsuHPI GGTGA 3 cut(s) 283, 471, 569
AsuNHI GCTAGC 1 cut(s) 832
BalI TGGCCA 2 cut(s) 652, 716
BanI GGYRCC 1 cut(s) 428
BbvI GCAGC 5 cut(s) 293, 310, 316, 338, 799
BciT130I CCWGG 2 cut(s) 756, 829
BcoDI GTCTC 1 cut(s) 682
BfaI CTAG 5 cut(s) 80, 114, 635, 705, 833
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 5 cut(s) 282, 324, 327, 330, 813
BlsI GCNGC 5 cut(s) 283, 325, 328, 331, 814
Bme1390I CCNGG 2 cut(s) 756, 829
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 756, 829
BmsI GCATC 4 cut(s) 225, 550, 801, 896
BmtI GCTAGC 1 cut(s) 836
BpmI CTGGAG 1 cut(s) 385
BpuEI CTTGAG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 754
BsaWI WCCGGW 1 cut(s) 860
Bsc4I CCNNNNNNNGG 1 cut(s) 648
Bse1I ACTGG 2 cut(s) 264, 368
BseBI CCWGG 2 cut(s) 756, 829
BseDI CCNNGG 1 cut(s) 754
BseGI GGATG 1 cut(s) 890
BseLI CCNNNNNNNGG 1 cut(s) 648
BseMII CTCAG 2 cut(s) 395, 555
BseNI ACTGG 2 cut(s) 264, 368
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 5 cut(s) 293, 310, 316, 338, 799
BshFI GGCC 3 cut(s) 542, 652, 716
BshNI GGYRCC 1 cut(s) 428
BsiSI CCGG 1 cut(s) 861
BslI CCNNNNNNNGG 1 cut(s) 648
BsmAI GTCTC 1 cut(s) 682
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 3 cut(s) 542, 652, 716
BspANI GGCC 3 cut(s) 542, 652, 716
BspCNI CTCAG 2 cut(s) 394, 556
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 430
BspMAI CTGCAG 1 cut(s) 328
BspOI GCTAGC 1 cut(s) 836
BspT107I GGYRCC 1 cut(s) 428
BsrI ACTGG 2 cut(s) 264, 368
BssECI CCNNGG 1 cut(s) 754
BssNI GRCGYC 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 756, 829
Bst4CI ACNGT 2 cut(s) 13, 103
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 357
BstC8I GCNNGC 4 cut(s) 27, 650, 790, 834
BstDEI CTNAG 2 cut(s) 381, 564
BstF5I GGATG 1 cut(s) 890
BstHHI GCGC 1 cut(s) 509
BstMAI GTCTC 1 cut(s) 682
BstMWI GCNNNNNNNGC 2 cut(s) 227, 329
BstNI CCWGG 2 cut(s) 756, 829
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 754, 827
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 5 cut(s) 293, 310, 316, 338, 799
BsuRI GGCC 3 cut(s) 542, 652, 716
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 890
BtsIMutI CAGTG 3 cut(s) 18, 361, 801
Cac8I GCNNGC 4 cut(s) 27, 650, 790, 834
CaiI CAGNNNCTG 1 cut(s) 209
CciI TCATGA 1 cut(s) 96
CfoI GCGC 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 540
CseI GACGC 1 cut(s) 736
Csp6I GTAC 1 cut(s) 724
CviAII CATG 2 cut(s) 26, 97
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 2 cut(s) 381, 564
EaeI YGGCCR 2 cut(s) 650, 714
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 330
EcoRII CCWGG 2 cut(s) 754, 827
EcoRV GATATC 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 700
FaeI CATG 2 cut(s) 29, 100
FatI CATG 2 cut(s) 25, 96
Fnu4HI GCNGC 5 cut(s) 282, 324, 327, 330, 813
FokI GGATG 1 cut(s) 877
Fsp4HI GCNGC 5 cut(s) 282, 324, 327, 330, 813
FspBI CTAG 5 cut(s) 80, 114, 635, 705, 833
GlaI GCGC 1 cut(s) 508
GluI GCNGC 5 cut(s) 282, 324, 327, 330, 813
GsuI CTGGAG 1 cut(s) 385
HaeIII GGCC 3 cut(s) 542, 652, 716
HapII CCGG 1 cut(s) 861
HgaI GACGC 1 cut(s) 736
HhaI GCGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 2 cut(s) 29, 100
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HindIII AAGCTT 2 cut(s) 521, 684
HinfI GANTC 3 cut(s) 294, 476, 759
HpaII CCGG 1 cut(s) 861
HphI GGTGA 3 cut(s) 283, 471, 569
Hpy166II GTNNAC 3 cut(s) 274, 355, 361
Hpy188I TCNGA 3 cut(s) 384, 475, 600
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 3 cut(s) 274, 355, 361
HpyAV CCTTC 4 cut(s) 15, 121, 341, 790
HpyCH4III ACNGT 2 cut(s) 13, 103
HpyCH4IV ACGT 2 cut(s) 174, 357
HpyCH4V TGCA 7 cut(s) 29, 281, 326, 332, 377, 698, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 329
HpyF3I CTNAG 2 cut(s) 381, 564
HpySE526I ACGT 2 cut(s) 174, 357
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 2 cut(s) 29, 100
HspAI GCGC 1 cut(s) 507
Lsp1109I GCAGC 5 cut(s) 293, 310, 316, 338, 799
LweI GCATC 4 cut(s) 225, 550, 801, 896
MaeI CTAG 5 cut(s) 80, 114, 635, 705, 833
MaeII ACGT 2 cut(s) 174, 357
MaeIII GTNAC 3 cut(s) 34, 199, 823
MboII GAAGA 5 cut(s) 28, 136, 638, 859, 862
MfeI CAATTG 1 cut(s) 742
MlsI TGGCCA 2 cut(s) 652, 716
MluCI AATT 4 cut(s) 438, 708, 730, 742
MluNI TGGCCA 2 cut(s) 652, 716
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 8 cut(s) 176, 236, 468, 507, 571, 576, 586, 868
Mox20I TGGCCA 2 cut(s) 652, 716
Mph1103I ATGCAT 1 cut(s) 700
MscI TGGCCA 2 cut(s) 652, 716
MseI TTAA 3 cut(s) 107, 518, 797
MslI CAYNNNNRTG 1 cut(s) 366
Msp20I TGGCCA 2 cut(s) 652, 716
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 861
MspR9I CCNGG 2 cut(s) 756, 829
MunI CAATTG 1 cut(s) 742
Mva1269I GAATGC 1 cut(s) 700
MvaI CCWGG 2 cut(s) 756, 829
MwoI GCNNNNNNNGC 2 cut(s) 227, 329
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 2 cut(s) 29, 100
NlaIV GGNNCC 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 366
PaeI GCATGC 1 cut(s) 29
PagI TCATGA 1 cut(s) 96
PctI GAATGC 1 cut(s) 700
PfeI GAWTC 2 cut(s) 476, 759
PflMI CCANNNNNTGG 1 cut(s) 648
PkrI GCNGC 5 cut(s) 283, 325, 328, 331, 814
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 754, 827
PspGI CCWGG 2 cut(s) 754, 827
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 540
PsrI GAACNNNNNNTAC 2 cut(s) 579, 611
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 3 cut(s) 107, 518, 797
SatI GCNGC 5 cut(s) 282, 324, 327, 330, 813
Sau96I GGNCC 1 cut(s) 540
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 756, 829
SfaNI GCATC 4 cut(s) 225, 550, 801, 896
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
SphI GCATGC 1 cut(s) 29
Sse9I AATT 4 cut(s) 438, 708, 730, 742
SspI AATATT 1 cut(s) 496
SspMI CTAG 5 cut(s) 80, 114, 635, 705, 833
StyD4I CCNGG 2 cut(s) 754, 827
TaaI ACNGT 2 cut(s) 13, 103
TaiI ACGT 2 cut(s) 177, 360
TasI AATT 4 cut(s) 438, 708, 730, 742
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 2 cut(s) 476, 759
Tru1I TTAA 3 cut(s) 107, 518, 797
Tru9I TTAA 3 cut(s) 107, 518, 797
TscAI CASTG 3 cut(s) 18, 368, 808
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 5 cut(s) 281, 323, 326, 329, 812
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 176, 307, 822
TspRI CASTG 3 cut(s) 18, 368, 808
Van91I CCANNNNNTGG 1 cut(s) 648
XapI RAATTY 1 cut(s) 730
XceI RCATGY 1 cut(s) 29
XspI CTAG 5 cut(s) 80, 114, 635, 705, 833
ZraI GACGTC 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.