pycom07g14080

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000170
Physical Location & Seq
Reverse (-)
15905595 .. 15907601
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g14080.3

Sequence Viewer

Length: 903 bp
ATGGCAGAAGCAAAAAAAAGGTACGCAGTTGTGACGGGTGCAAACAAAGGCATAGGATTGGGAGTTGTGGAGCAGTTAGCATTAGATGGAATCACTGTTGTCCTAACTGCCAGAGATGAGAAGAGGGGTCTTGAAGCTGTCGAGAAACTCAAGGAGTCTGCAGGCCTAGCAGAAGGTCAAGTGGTTTTTCATCAACTTGATGTGACTAAACCTGCAACAATTGCTCCTTTGGCAGAATTCATCAAAACCCGGTTCGGAAAACTCGATATCTTGGTGAACAATGCAGGGATCGGTGGAGCAATAGTGGATGCTGATGCTTTCAGGGCTTCAATAGTTTCGGGTGCTGCGGAAGGAGGAACAGTTGATTCGAATAAAGTAATGACTCAAAAGTATGAGTTAGCGGAAGAATGCTTGCAAACAAACTATTATGGTGCTAAAAGAACAGCTGAAGCGCTTATTCCACTCCTCCAGTTATCTGATTCACCAAAAGTTATTAACGTTTCATCTTCTTTGGGAAAGTTAAACTGCATACGAAATGATTGGGTTAAAGGAGTTTTCAGTGATGCCGAAAACCTCACAGAAGAGAGAGTAGATGAGGTGTTGACTGAGTTTCTAAAAGACTTCAAGGAAGGCTCACTTGAAAGCAAAGGTTGGCCTTCTTTTATGTCTGCCTATACACTTTCTAAGACAGCATTGAATGCATATACAAGGCTTCTGGCCAAGAAGTACCCCAATCTTTGTGTCAATTCGGTCTGCCCTGGCTTTGTCAAAACAGATATTAACTTCAATGCCGGCATCTTGCCTGTTGAAGAAGGTGCTGCAAGGGTTGTGAAGTTAGCATTGCTGCCCAATGATTGCCCTTCTGGTTCCTTCTTTGCTCATTTTAAGGTGACAGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

301

Amino Acids

32.3

Weight (kDa)

5.65

Isoelectric Point (pI)

24.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AciI CCGC 2 cut(s) 347, 401
AclI AACGTT 1 cut(s) 498
AclWI GGATC 1 cut(s) 296
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 2 cut(s) 23, 728
AfeI AGCGCT 1 cut(s) 453
AgsI TTSAA 7 cut(s) 134, 330, 625, 641, 697, 787, 809
AjnI CCWGG 1 cut(s) 757
AluBI AGCT 2 cut(s) 137, 446
AluI AGCT 2 cut(s) 137, 446
AlwI GGATC 1 cut(s) 296
Aor51HI AGCGCT 1 cut(s) 453
AoxI GGCC 3 cut(s) 163, 653, 717
ApeKI GCWGC 3 cut(s) 344, 818, 844
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 286, 474, 901
AsuII TTCGAA 1 cut(s) 368
BalI TGGCCA 1 cut(s) 719
BbvI GCAGC 3 cut(s) 331, 805, 831
BccI CCATC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 759
BcnI CCSGG 1 cut(s) 250
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 3 cut(s) 345, 819, 845
BlsI GCNGC 3 cut(s) 346, 820, 846
Bme1390I CCNGG 2 cut(s) 250, 759
BmiI GGNNCC 1 cut(s) 868
BmrFI CCNGG 2 cut(s) 250, 759
BmsI GCATC 4 cut(s) 298, 304, 553, 804
BpmI CTGGAG 1 cut(s) 452
Bpu14I TTCGAA 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 757
BsaXI ACNNNNNCTCC 6 cut(s) 208, 238, 288, 318, 345, 375
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 1 cut(s) 469
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 1 cut(s) 757
BseGI GGATG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 3 cut(s) 331, 805, 831
BshFI GGCC 3 cut(s) 165, 655, 719
BsiSI CCGG 2 cut(s) 250, 792
BsmI GAATGC 2 cut(s) 413, 703
BsnI GGCC 3 cut(s) 165, 655, 719
Bsp119I TTCGAA 1 cut(s) 368
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 2 cut(s) 347, 401
BspANI GGCC 3 cut(s) 165, 655, 719
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 868
BspMAI CTGCAG 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 1 cut(s) 296
BspT104I TTCGAA 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 839
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 1 cut(s) 757
BssMI GATC 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 2 cut(s) 97, 361
Bst6I CTCTTC 2 cut(s) 116, 576
BstAPI GCANNNNNTGC 2 cut(s) 221, 698
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 3 cut(s) 163, 413, 793
BstDEI CTNAG 2 cut(s) 606, 684
BstF5I GGATG 1 cut(s) 313
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 5 cut(s) 167, 221, 230, 323, 698
BstNI CCWGG 1 cut(s) 759
BstSCI CCNGG 2 cut(s) 248, 757
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 331, 805, 831
BsuRI GGCC 3 cut(s) 165, 655, 719
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 93, 565
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 163, 413, 793
CfoI GCGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 791
Csp6I GTAC 2 cut(s) 22, 727
CviJI RGCY 9 cut(s) 137, 165, 326, 446, 633, 655, 712, 719, 762
CviKI_1 RGCY 9 cut(s) 137, 165, 326, 446, 633, 655, 712, 719, 762
CviQI GTAC 2 cut(s) 22, 727
DdeI CTNAG 2 cut(s) 606, 684
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 2 cut(s) 116, 576
EarI CTCTTC 2 cut(s) 116, 576
Eco147I AGGCCT 1 cut(s) 165
Eco32I GATATC 1 cut(s) 268
Eco47III AGCGCT 1 cut(s) 453
Eco57I CTGAAG 1 cut(s) 468
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 757
EcoRV GATATC 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 703
FaiI YATR 8 cut(s) 53, 393, 429, 530, 665, 675, 703, 705
FalI AAGNNNNNCTT 2 cut(s) 621, 653
Fnu4HI GCNGC 3 cut(s) 345, 819, 845
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 3 cut(s) 345, 819, 845
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 453
GluI GCNGC 3 cut(s) 345, 819, 845
GsuI CTGGAG 1 cut(s) 452
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 3 cut(s) 165, 655, 719
HapII CCGG 2 cut(s) 250, 792
HhaI GCGC 1 cut(s) 454
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HinfI GANTC 5 cut(s) 90, 155, 365, 382, 479
HpaII CCGG 2 cut(s) 250, 792
HphI GGTGA 3 cut(s) 286, 474, 901
Hpy166II GTNNAC 2 cut(s) 277, 603
Hpy188I TCNGA 2 cut(s) 257, 478
Hpy188III TCNNGA 2 cut(s) 131, 142
Hpy8I GTNNAC 2 cut(s) 277, 603
HpyAV CCTTC 7 cut(s) 167, 344, 623, 666, 806, 870, 880
HpyCH4III ACNGT 2 cut(s) 97, 361
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 8 cut(s) 41, 161, 215, 284, 415, 528, 701, 821
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 221, 230, 323, 698
HpyF3I CTNAG 2 cut(s) 606, 684
HpySE526I ACGT 1 cut(s) 498
HspAI GCGC 1 cut(s) 452
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 3 cut(s) 70, 229, 296
Lsp1109I GCAGC 3 cut(s) 331, 805, 831
LweI GCATC 4 cut(s) 298, 304, 553, 804
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 3 cut(s) 31, 202, 889
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 5 cut(s) 133, 416, 498, 593, 821
MfeI CAATTG 1 cut(s) 219
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 3 cut(s) 219, 236, 745
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 2 cut(s) 164, 376
MnlI CCTC 5 cut(s) 117, 347, 476, 584, 589
Mox20I TGGCCA 1 cut(s) 719
Mph1103I ATGCAT 1 cut(s) 703
MroNI GCCGGC 1 cut(s) 791
MscI TGGCCA 1 cut(s) 719
MseI TTAA 6 cut(s) 495, 521, 546, 780, 885, 901
Msp20I TGGCCA 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 2 cut(s) 250, 792
MspR9I CCNGG 2 cut(s) 250, 759
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 2 cut(s) 413, 703
MvaI CCWGG 1 cut(s) 759
MwoI GCNNNNNNNGC 5 cut(s) 167, 221, 230, 323, 698
NaeI GCCGGC 1 cut(s) 793
NciI CCSGG 1 cut(s) 250
NdeII GATC 1 cut(s) 288
NgoMIV GCCGGC 1 cut(s) 791
NlaIV GGNNCC 1 cut(s) 868
NmuCI GTSAC 3 cut(s) 31, 202, 889
NsiI ATGCAT 1 cut(s) 703
NspV TTCGAA 1 cut(s) 368
PceI AGGCCT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 2 cut(s) 413, 703
PdiI GCCGGC 1 cut(s) 793
PfeI GAWTC 3 cut(s) 90, 365, 479
PkrI GCNGC 3 cut(s) 346, 820, 846
PleI GAGTC 2 cut(s) 163, 376
PpsI GAGTC 2 cut(s) 163, 376
Psp1406I AACGTT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 1 cut(s) 868
PstI CTGCAG 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 23, 728
RsaNI GTAC 2 cut(s) 22, 727
SaqAI TTAA 6 cut(s) 495, 521, 546, 780, 885, 901
SatI GCNGC 3 cut(s) 345, 819, 845
Sau3AI GATC 1 cut(s) 288
SchI GAGTC 2 cut(s) 164, 376
ScrFI CCNGG 2 cut(s) 250, 759
SfaNI GCATC 4 cut(s) 298, 304, 553, 804
SfcI CTRYAG 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 3 cut(s) 219, 236, 745
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 2 cut(s) 347, 401
SspMI CTAG 1 cut(s) 167
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 248, 757
TaaI ACNGT 2 cut(s) 97, 361
TaiI ACGT 1 cut(s) 501
TaqI TCGA 3 cut(s) 141, 264, 368
TaqII GACCGA 1 cut(s) 739
TasI AATT 3 cut(s) 219, 236, 745
TfiI GAWTC 3 cut(s) 90, 365, 479
Tru1I TTAA 6 cut(s) 495, 521, 546, 780, 885, 901
Tru9I TTAA 6 cut(s) 495, 521, 546, 780, 885, 901
TscAI CASTG 2 cut(s) 100, 565
TseFI GTSAC 3 cut(s) 31, 202, 889
TseI GCWGC 3 cut(s) 344, 818, 844
Tsp45I GTSAC 3 cut(s) 31, 202, 889
TspDTI ATGAA 3 cut(s) 179, 229, 492
TspRI CASTG 2 cut(s) 100, 565
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.