Rh1AG248500

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
46294000 .. 46295193
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG248500.1

Sequence Viewer

Length: 885 bp
ATGGCAGAAGCAACAAAGAGGTATGCAGTTGTTACAGGATCAAACAAAGGAATTGGATTCGAAACTGTAAGGCAGTTGGTCTTAAATGGAATCACTGTGGTCTTAACTGCTAGAGATGAGAAGAGGGGACTTGAAGCTGTTGAGAAACTGAAAAAGTCTGGCCTCTCAGGTCAAGTGATTTTCCACCAACTTGATGTGGCTGACCCTGCTAGTATTGCTTCTTTGGCACAATTCATCAAAACCCAGTTCGGGAAGCTCGATATCTTGGTGAACAATGCAGGGATTGGTGGATCCATAATTGATGCTGATGGTGCTAAAGCTGCAGTTGCTGCTGGAGGACAAATTGATTGGCAAAAACTGGTAACAGAAACTTATGAATTAACAGAAGAATGCTTGCAAATCAATTATTATGGAGCTAAAAGAACATCCGAAGCACTTATTCCACTCCTTGAGCTATCTGATTCACCAAGAATTGTCAATGTTTCATCCTCTATGGGAAAGTTAAAGTACATGCCAAGTGATAGGGTTAAAGAAATTTTTACTGATGTAGAGAACCTGAGGGAAGAGAGTGTAGATGAAGTATTGACAGAGTTTCTTAAGGACTACAAGGAGGGTTCACTTGAAAGCAAGGGCTGGCCTTCTTCTATGTCAGGCTATACAGTTGCCAAAACAGCACTAAATGCATATACAAGGATTCTAGCCAAGAAGTACCCTGGTTTTCGTGTTAACTGTGTCTGCCCCGGCTATGTCAAAACAGATTTGAACTTCAATGCCGGTGTCGTGCCTGTTGAAGAAGGTGCTGCAAATTCTGTGAGGTTAGCACTGCTGCCCAGTGATGGCCCTTCTGGCAAATTCTTTGTTCGGTCTGAAGTTAGCATATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

294

Amino Acids

31.88

Weight (kDa)

5.72

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 170 1.3e-27 short chain dehydrogenase
KR PF08659 10 - 95 2.3e-06 KR domain
adh_short_C2 PF13561 15 - 172 3e-18 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 210 - 255 3.1e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 46, 285, 298
AcsI RAATTY 3 cut(s) 534, 805, 851
AfaI GTAC 2 cut(s) 509, 710
AfiI CCNNNNNNNGG 2 cut(s) 249, 836
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 5 cut(s) 134, 623, 763, 769, 791
AjnI CCWGG 1 cut(s) 712
AluBI AGCT 5 cut(s) 137, 256, 320, 416, 454
AluI AGCT 5 cut(s) 137, 256, 320, 416, 454
AlwI GGATC 3 cut(s) 46, 285, 298
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 3 cut(s) 160, 635, 838
ApeKI GCWGC 4 cut(s) 320, 329, 800, 826
ApoI RAATTY 3 cut(s) 534, 805, 851
AspS9I GGNCC 1 cut(s) 839
AsuC2I CCSGG 1 cut(s) 741
AsuHPI GGTGA 2 cut(s) 280, 456
AsuII TTCGAA 1 cut(s) 60
AxyI CCTNAGG 1 cut(s) 557
BamHI GGATCC 1 cut(s) 290
BbvI GCAGC 4 cut(s) 307, 316, 787, 813
BccI CCATC 2 cut(s) 302, 830
BciT130I CCWGG 1 cut(s) 714
BcnI CCSGG 1 cut(s) 741
BfaI CTAG 3 cut(s) 111, 210, 698
BfmI CTRYAG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 596
BglI GCCNNNNNGGC 1 cut(s) 846
BisI GCNGC 4 cut(s) 321, 330, 801, 827
BlsI GCNGC 4 cut(s) 322, 331, 802, 828
Bme1390I CCNGG 2 cut(s) 714, 741
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 714, 741
BmrI ACTGGG 2 cut(s) 238, 825
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 2 cut(s) 238, 825
BpmI CTGGAG 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 741
BsaJI CCNNGG 2 cut(s) 712, 739
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 836
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 3 cut(s) 244, 363, 831
Bse21I CCTNAGG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 2 cut(s) 712, 739
BseGI GGATG 2 cut(s) 425, 485
BseLI CCNNNNNNNGG 2 cut(s) 249, 836
BseMII CTCAG 2 cut(s) 180, 548
BseNI ACTGG 3 cut(s) 244, 363, 831
BseXI GCAGC 4 cut(s) 307, 316, 787, 813
BshFI GGCC 3 cut(s) 162, 637, 840
BsiSI CCGG 2 cut(s) 741, 774
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 249, 836
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 3 cut(s) 162, 637, 840
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 38, 290
BspANI GGCC 3 cut(s) 162, 637, 840
BspCNI CTCAG 2 cut(s) 179, 549
BspLI GGNNCC 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 3 cut(s) 46, 285, 298
BspT104I TTCGAA 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 596
BsrFI RCCGGY 1 cut(s) 773
BsrI ACTGG 3 cut(s) 244, 363, 831
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 2 cut(s) 712, 739
BssMI GATC 2 cut(s) 38, 290
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 4 cut(s) 67, 97, 661, 731
Bst6I CTCTTC 2 cut(s) 116, 558
BstAFI CTTAAG 1 cut(s) 596
BstAPI GCANNNNNTGC 2 cut(s) 329, 680
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 395, 635
BstDEI CTNAG 2 cut(s) 166, 557
BstF5I GGATG 2 cut(s) 425, 485
BstKTI GATC 2 cut(s) 41, 293
BstMBI GATC 2 cut(s) 38, 290
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 2 cut(s) 712, 739
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 4 cut(s) 307, 316, 787, 813
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
Bsu36I CCTNAGG 1 cut(s) 557
BsuRI GGCC 3 cut(s) 162, 637, 840
BtsCI GGATG 2 cut(s) 425, 485
BtsI GCAGTG 1 cut(s) 821
BtsIMutI CAGTG 3 cut(s) 93, 821, 838
Cac8I GCNNGC 2 cut(s) 395, 635
CaiI CAGNNNCTG 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 773
Cfr13I GGNCC 1 cut(s) 839
Csp6I GTAC 2 cut(s) 508, 709
CviAII CATG 1 cut(s) 511
CviQI GTAC 2 cut(s) 508, 709
DdeI CTNAG 2 cut(s) 166, 557
DpnI GATC 2 cut(s) 40, 292
DpnII GATC 2 cut(s) 38, 290
Eam1104I CTCTTC 2 cut(s) 116, 558
EarI CTCTTC 2 cut(s) 116, 558
Eco32I GATATC 1 cut(s) 262
Eco81I CCTNAGG 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 712
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 685
FaeI CATG 1 cut(s) 514
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 510
Fnu4HI GCNGC 4 cut(s) 321, 330, 801, 827
FokI GGATG 2 cut(s) 412, 472
Fsp4HI GCNGC 4 cut(s) 321, 330, 801, 827
FspBI CTAG 3 cut(s) 111, 210, 698
GluI GCNGC 4 cut(s) 321, 330, 801, 827
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 3 cut(s) 162, 637, 840
HapII CCGG 2 cut(s) 741, 774
Hin1II CATG 1 cut(s) 514
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 4 cut(s) 57, 90, 461, 694
HpaI GTTAAC 1 cut(s) 727
HpaII CCGG 2 cut(s) 741, 774
HphI GGTGA 2 cut(s) 280, 456
Hpy166II GTNNAC 3 cut(s) 271, 617, 727
Hpy188I TCNGA 3 cut(s) 430, 460, 868
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 3 cut(s) 271, 617, 727
HpyAV CCTTC 3 cut(s) 648, 788, 852
HpyCH4III ACNGT 4 cut(s) 67, 97, 661, 731
HpyCH4V TGCA 6 cut(s) 26, 278, 323, 397, 683, 803
HpyF3I CTNAG 2 cut(s) 166, 557
Hsp92II CATG 1 cut(s) 514
KspAI GTTAAC 1 cut(s) 727
Kzo9I GATC 2 cut(s) 38, 290
LmnI GCTCC 1 cut(s) 413
Lsp1109I GCAGC 4 cut(s) 307, 316, 787, 813
LweI GCATC 1 cut(s) 292
MaeI CTAG 3 cut(s) 111, 210, 698
MaeIII GTNAC 2 cut(s) 31, 361
MalI GATC 2 cut(s) 40, 292
MboI GATC 2 cut(s) 38, 290
MboII GAAGA 5 cut(s) 133, 398, 575, 633, 803
MflI RGATCY 1 cut(s) 290
MnlI CCTC 8 cut(s) 12, 117, 173, 329, 499, 552, 604, 807
Mph1103I ATGCAT 1 cut(s) 685
MseI TTAA 7 cut(s) 83, 104, 380, 503, 528, 597, 726
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 2 cut(s) 741, 774
MspR9I CCNGG 2 cut(s) 714, 741
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 1 cut(s) 714
NciI CCSGG 1 cut(s) 741
NdeII GATC 2 cut(s) 38, 290
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 685
NspI RCATGY 1 cut(s) 514
NspV TTCGAA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 395
PfeI GAWTC 4 cut(s) 57, 90, 461, 694
PkrI GCNGC 4 cut(s) 322, 331, 802, 828
Psp6I CCWGG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 839
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 290
RsaI GTAC 2 cut(s) 509, 710
RsaNI GTAC 2 cut(s) 508, 709
SaqAI TTAA 7 cut(s) 83, 104, 380, 503, 528, 597, 726
SatI GCNGC 4 cut(s) 321, 330, 801, 827
Sau3AI GATC 2 cut(s) 38, 290
Sau96I GGNCC 1 cut(s) 839
ScrFI CCNGG 2 cut(s) 714, 741
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 449, 596
SmoI CTYRAG 2 cut(s) 449, 596
SspMI CTAG 3 cut(s) 111, 210, 698
StyD4I CCNGG 2 cut(s) 712, 739
TaaI ACNGT 4 cut(s) 67, 97, 661, 731
TaqI TCGA 2 cut(s) 60, 258
TaqII GACCGA 1 cut(s) 852
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 4 cut(s) 57, 90, 461, 694
Tru1I TTAA 7 cut(s) 83, 104, 380, 503, 528, 597, 726
Tru9I TTAA 7 cut(s) 83, 104, 380, 503, 528, 597, 726
TscAI CASTG 3 cut(s) 100, 828, 838
TseI GCWGC 4 cut(s) 320, 329, 800, 826
TspDTI ATGAA 4 cut(s) 223, 390, 474, 591
TspRI CASTG 3 cut(s) 100, 828, 838
Vha464I CTTAAG 1 cut(s) 596
XapI RAATTY 3 cut(s) 534, 805, 851
XceI RCATGY 1 cut(s) 514
XspI CTAG 3 cut(s) 111, 210, 698
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.