MD01G1052600.v1.1

( )-neomenthol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000170
Physical Location & Seq
Forward (+)
15764716 .. 15766688
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1052600.v1.1.491

Sequence Viewer

Length: 894 bp
ATGGCAGAAGCAACAAAGAGGTATGCAGTTGTTACAGGCGCAAACAAAGGATTAGGATTAGGGATTGTCAAGCAGTTGGCATCAGATGGAATCACTGTGGTCTTAACTGCCAGAGATGAGAAGAGGGGTCTTGAAGCTGTTGAGAAACTCAAACAGTCTGGCTTGGCAGGTCAAGTGGTATTTCATCAACTTGATGTGGCTAACCCTGCTACCATTCTACCTTTGGCAGAATATATCAAAACCCAGTTCGGGAAACTCGATATCTTGGTGAACAATGCAGGAATTATGGGAGCCGCCATTGTAGATACCGATGCTTTTAAAGCTGCAGCAGCTTCTGGTATTCCGGAAGGAACTGATTGGAAGAAAATGATGACTCAAAATTATGAGTTAGCAGAAGAATGCGTGCAAATAAACTATTATGGTGCTAAACGAACAACTGAAGCGCTTATTCCACTCCTCCAATTATCTGATTCACCGAGAATAGTTAACATTTCATCTTCCTGGGGCAAGTTAAACAATATACCTAGTGACTGGGCTAAAGGAGTTTTCAGTGATGCTGAAAATGGAACAGAAGAGCGAATAGATGAGGTGTTGACTCAGTTTCTAAAAGACTTCAAGGAGGGTTCAATTGAAAGCAAAGGCTGGCCTTCTTTTATGGCTGGCTATATACTCTCAAAGGCTGCAATGAATGCACATACACGTGTCCTAGCCAAGAAGTACCCCGATTTTCGCATCAATTGTCTCTGCCCCGGAATTGTCAAAACAGATATAAACTTCAATGCTGGTAACGTGCCTGTCGAAGAAAGTGCTGCAAGGGTTCTGAAGTTAGCATTTCTTCCCGATGATGGCCCTTCTGGCTTCTTCTTTGTTGAGTCTGAAGTAACAGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

298

Amino Acids

32.16

Weight (kDa)

5.3

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 172 2.4e-26 short chain dehydrogenase
KR PF08659 10 - 102 4.1e-07 KR domain
adh_short_C2 PF13561 13 - 104 3.8e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 459, 842
AcvI CACGTG 1 cut(s) 701
AfaI GTAC 1 cut(s) 719
AfeI AGCGCT 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 249, 845
AflIII ACRYGT 2 cut(s) 698, 700
AgsI TTSAA 5 cut(s) 134, 616, 627, 632, 778
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 3 cut(s) 137, 323, 332
AluI AGCT 3 cut(s) 137, 323, 332
Alw26I GTCTC 1 cut(s) 746
AlwNI CAGNNNCTG 1 cut(s) 335
Aor13HI TCCGGA 1 cut(s) 343
Aor51HI AGCGCT 1 cut(s) 444
AoxI GGCC 2 cut(s) 644, 847
ApeKI GCWGC 5 cut(s) 323, 326, 329, 680, 809
AspLEI GCGC 2 cut(s) 41, 445
AspS9I GGNCC 1 cut(s) 848
AsuC2I CCSGG 1 cut(s) 750
AsuHPI GGTGA 2 cut(s) 280, 465
BbrPI CACGTG 1 cut(s) 701
BbvI GCAGC 5 cut(s) 310, 338, 341, 667, 796
BccI CCATC 2 cut(s) 80, 839
BcgI CGANNNNNNTGC 2 cut(s) 788, 822
BciT130I CCWGG 1 cut(s) 502
BcnI CCSGG 1 cut(s) 750
BcoDI GTCTC 1 cut(s) 746
BfaI CTAG 2 cut(s) 525, 707
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 446
BfuAI ACCTGC 1 cut(s) 158
BglI GCCNNNNNGGC 1 cut(s) 855
BisI GCNGC 6 cut(s) 294, 324, 327, 330, 681, 810
BlsI GCNGC 6 cut(s) 295, 325, 328, 331, 682, 811
Bme1390I CCNGG 2 cut(s) 502, 750
BmgT120I GGNCC 1 cut(s) 848
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 502, 750
BmrI ACTGGG 2 cut(s) 238, 541
BmsI GCATC 4 cut(s) 89, 301, 544, 741
BmuI ACTGGG 2 cut(s) 238, 541
BpuMI CCSGG 1 cut(s) 750
BsaAI YACGTR 1 cut(s) 701
BsaJI CCNNGG 2 cut(s) 501, 748
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 845
Bse1I ACTGG 2 cut(s) 244, 536
Bse3DI GCAATG 1 cut(s) 690
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 2 cut(s) 501, 748
BseLI CCNNNNNNNGG 2 cut(s) 249, 845
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 2 cut(s) 244, 536
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 5 cut(s) 310, 338, 341, 667, 796
BshFI GGCC 2 cut(s) 646, 849
BsiSI CCGG 2 cut(s) 344, 750
BslI CCNNNNNNNGG 2 cut(s) 249, 845
BsmAI GTCTC 1 cut(s) 746
BsmI GAATGC 2 cut(s) 404, 694
BsnI GGCC 2 cut(s) 646, 849
Bsp13I TCCGGA 1 cut(s) 343
BspACI CCGC 1 cut(s) 294
BspANI GGCC 2 cut(s) 646, 849
BspCNI CTCAG 1 cut(s) 610
BspEI TCCGGA 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 2 cut(s) 244, 536
BssECI CCNNGG 2 cut(s) 501, 748
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 2 cut(s) 97, 156
Bst6I CTCTTC 2 cut(s) 116, 567
BstAPI GCANNNNNTGC 1 cut(s) 689
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 3 cut(s) 404, 644, 661
BstDEI CTNAG 1 cut(s) 597
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 2 cut(s) 41, 445
BstMAI GTCTC 1 cut(s) 746
BstMWI GCNNNNNNNGC 5 cut(s) 206, 320, 329, 689, 855
BstNI CCWGG 1 cut(s) 502
BstSCI CCNGG 2 cut(s) 500, 748
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 5 cut(s) 310, 338, 341, 667, 796
BsuRI GGCC 2 cut(s) 646, 849
BtsIMutI CAGTG 2 cut(s) 93, 556
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 3 cut(s) 404, 644, 661
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 2 cut(s) 41, 445
Cfr13I GGNCC 1 cut(s) 848
Csp6I GTAC 1 cut(s) 718
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 1 cut(s) 597
DraI TTTAAA 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 116, 567
EarI CTCTTC 2 cut(s) 116, 567
Eco32I GATATC 1 cut(s) 262
Eco47III AGCGCT 1 cut(s) 444
Eco57I CTGAAG 2 cut(s) 459, 842
Eco72I CACGTG 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 500
EcoRV GATATC 1 cut(s) 262
Fnu4HI GCNGC 6 cut(s) 294, 324, 327, 330, 681, 810
Fsp4HI GCNGC 6 cut(s) 294, 324, 327, 330, 681, 810
FspBI CTAG 2 cut(s) 525, 707
GlaI GCGC 2 cut(s) 40, 444
GluI GCNGC 6 cut(s) 294, 324, 327, 330, 681, 810
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 2 cut(s) 646, 849
HapII CCGG 2 cut(s) 344, 750
HhaI GCGC 2 cut(s) 41, 445
Hin6I GCGC 2 cut(s) 39, 443
HinP1I GCGC 2 cut(s) 39, 443
HincII GTYRAC 2 cut(s) 487, 594
HindII GTYRAC 2 cut(s) 487, 594
HinfI GANTC 5 cut(s) 90, 373, 470, 595, 872
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 2 cut(s) 344, 750
HphI GGTGA 2 cut(s) 280, 465
Hpy166II GTNNAC 3 cut(s) 271, 487, 594
Hpy188I TCNGA 4 cut(s) 85, 469, 822, 877
Hpy188III TCNNGA 4 cut(s) 131, 250, 344, 839
Hpy8I GTNNAC 3 cut(s) 271, 487, 594
HpyAV CCTTC 3 cut(s) 341, 657, 861
HpyCH4III ACNGT 2 cut(s) 97, 156
HpyCH4IV ACGT 2 cut(s) 700, 789
HpyCH4V TGCA 7 cut(s) 26, 278, 326, 406, 683, 692, 812
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 320, 329, 689, 855
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 2 cut(s) 700, 789
HspAI GCGC 2 cut(s) 39, 443
Kpn2I TCCGGA 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 487
LguI GCTCTTC 1 cut(s) 567
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 5 cut(s) 310, 338, 341, 667, 796
LweI GCATC 4 cut(s) 89, 301, 544, 741
MaeI CTAG 2 cut(s) 525, 707
MaeII ACGT 2 cut(s) 700, 789
MaeIII GTNAC 4 cut(s) 31, 527, 785, 880
MboII GAAGA 8 cut(s) 133, 373, 407, 489, 584, 812, 827, 853
MfeI CAATTG 2 cut(s) 627, 736
MluCI AATT 6 cut(s) 282, 379, 461, 627, 736, 753
MlyI GAGTC 3 cut(s) 367, 589, 881
MnlI CCTC 5 cut(s) 12, 117, 467, 580, 613
MroI TCCGGA 1 cut(s) 343
MseI TTAA 4 cut(s) 104, 318, 486, 512
MslI CAYNNNNRTG 1 cut(s) 699
MspI CCGG 2 cut(s) 344, 750
MspR9I CCNGG 2 cut(s) 502, 750
MunI CAATTG 2 cut(s) 627, 736
Mva1269I GAATGC 2 cut(s) 404, 694
MvaI CCWGG 1 cut(s) 502
MwoI GCNNNNNNNGC 5 cut(s) 206, 320, 329, 689, 855
NciI CCSGG 1 cut(s) 750
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 567
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 795
PctI GAATGC 2 cut(s) 404, 694
PfeI GAWTC 2 cut(s) 90, 470
PkrI GCNGC 6 cut(s) 295, 325, 328, 331, 682, 811
PleI GAGTC 3 cut(s) 367, 589, 880
PmaCI CACGTG 1 cut(s) 701
PmlI CACGTG 1 cut(s) 701
PpsI GAGTC 3 cut(s) 367, 589, 880
Ppu21I YACGTR 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 500
PspCI CACGTG 1 cut(s) 701
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 848
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 1 cut(s) 699
SapI GCTCTTC 1 cut(s) 567
SaqAI TTAA 4 cut(s) 104, 318, 486, 512
SatI GCNGC 6 cut(s) 294, 324, 327, 330, 681, 810
Sau96I GGNCC 1 cut(s) 848
SchI GAGTC 3 cut(s) 367, 589, 881
ScrFI CCNGG 2 cut(s) 502, 750
SfaNI GCATC 4 cut(s) 89, 301, 544, 741
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 699
Sse9I AATT 6 cut(s) 282, 379, 461, 627, 736, 753
SsiI CCGC 1 cut(s) 294
SspMI CTAG 2 cut(s) 525, 707
StyD4I CCNGG 2 cut(s) 500, 748
TaaI ACNGT 2 cut(s) 97, 156
TaiI ACGT 2 cut(s) 703, 792
TaqI TCGA 2 cut(s) 258, 798
TasI AATT 6 cut(s) 282, 379, 461, 627, 736, 753
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 90, 470
Tru1I TTAA 4 cut(s) 104, 318, 486, 512
Tru9I TTAA 4 cut(s) 104, 318, 486, 512
TscAI CASTG 2 cut(s) 100, 556
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 5 cut(s) 323, 326, 329, 680, 809
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 3 cut(s) 173, 483, 701
TspRI CASTG 2 cut(s) 100, 556
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 2 cut(s) 525, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.