MD04G1099400.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
18430891 .. 18432087
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1099400.v1.1.491

Sequence Viewer

Length: 360 bp
ATGGCCCAAAACTCTTCTTTTGGTTTCACAGAATCACTCTCTCTCCCTCCCTCCAAGCTCACTCTCTCTTTCTCTCGCTCCATTGCTGTTGTGACAGGAGCTAACAGAGGGATTGGATTTGGCACAGTTAAGCAGTTGGCTTCAAATGGGATCACAGTGGTTTTAACTGCTAAAGATGAGAATAGGGGTCTTGAAGTTCTTGAAAAATTGAAAGAGTTGGGATTCTTCGACCGGGTGGTTTTTCATCAGCTTGATGTAACAGATTCTGTTAGTGTTGCTAGATTGGCGGATTTTGTCAAAACCCAATTCGGGAAACTCGATATCTTGGTAAGTAAACATCGCAATAGAGAGCAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.08

Weight (kDa)

9.77

Isoelectric Point (pI)

19.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 28 - 110 4.3e-18 short chain dehydrogenase
adh_short_C2 PF13561 33 - 111 1.2e-12 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 4 cut(s) 144, 194, 203, 211
AluBI AGCT 3 cut(s) 58, 101, 250
AluI AGCT 3 cut(s) 58, 101, 250
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 233
BcnI CCSGG 1 cut(s) 233
BfaI CTAG 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMI GCAATG 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 309
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 81
BssMI GATC 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 127, 157
Bst6I CTCTTC 1 cut(s) 19
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 231
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 5 cut(s) 5, 58, 101, 140, 250
CviKI_1 RGCY 5 cut(s) 5, 58, 101, 140, 250
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
EciI GGCGGA 1 cut(s) 302
Eco32I GATATC 1 cut(s) 322
EcoRV GATATC 1 cut(s) 322
FspBI CTAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 232
HinfI GANTC 3 cut(s) 32, 222, 263
HpaII CCGG 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 335
Hpy188III TCNNGA 3 cut(s) 191, 200, 310
Hpy8I GTNNAC 1 cut(s) 335
HpyCH4III ACNGT 2 cut(s) 127, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 83, 98
LpnPI CCDG 2 cut(s) 81, 245
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 91, 256
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 2 cut(s) 6, 217
MluCI AATT 2 cut(s) 206, 305
MnlI CCTC 3 cut(s) 57, 61, 101
MseI TTAA 2 cut(s) 129, 164
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 284
NciI CCSGG 1 cut(s) 233
NdeII GATC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 3 cut(s) 32, 222, 263
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 129, 164
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 233
SetI ASST 3 cut(s) 60, 103, 252
Sse9I AATT 2 cut(s) 206, 305
SsiI CCGC 1 cut(s) 287
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 127, 157
TaqI TCGA 2 cut(s) 228, 318
TasI AATT 2 cut(s) 206, 305
TfiI GAWTC 3 cut(s) 32, 222, 263
Tru1I TTAA 2 cut(s) 129, 164
Tru9I TTAA 2 cut(s) 129, 164
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 162
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.