Rmu_sc0000144.1_g000019

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
OG0000170
Physical Location & Seq
Reverse (-)
69599 .. 71377
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000144.1_g000019.1.cds

Sequence Viewer

Length: 822 bp
atggcagaagccaaaaagaggtatgcagttgtcacaggggctaataaaggagttgggttcggagtagtaagacaattggcttcaaatgggatcatgacagtgttaacagctagagatgaaaagaggggtcttgaagctgttgaaaaattgaaagagtccggcctctctgagcttgtgttatttcatcagcttgatgtgacaaacccagatagcattgcttcccttgcacattttgtcgaaacccaatttgggaaactagatatcttgaagcttgaagaagtcaattggaatgaacttgcagcaccaaaccacgagttatcggaagaatgcctgaaaacaaactattatggcacgaaaggaatcacagaggcacttttgcccctcctcaagctgtccgattcaccaagactagttattgtttctgcggctgttgctaagttatcggattttccagatggatggcctaaagatgtattaagtaatgctgagaccctaacagaacagagaatagatgcagtactgagtcagtcactagaagatctcaaacaaggtttggtggaaaccaaaggctggcctcgatacttttcagcctattcagtctcaaaagctgccttgaatgcatacactagaattcttgcaaagaaatatccaagtttctacatcaattgtgtctgccctggttacaccaaaacagatttcaactgcaattctggcttcttaaccatcgacgaaggtgctgaaagcattgtcaggctggcgctgctccccaatgacagtcctactggccagttcttcatacggaaggaaccgtcaccattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

273

Amino Acids

30.07

Weight (kDa)

5.57

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 570
AciI CCGC 1 cut(s) 425
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 1 cut(s) 630
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 3 cut(s) 18, 249, 570
AgsI TTSAA 8 cut(s) 84, 134, 143, 151, 268, 275, 616, 700
AhlI ACTAGT 1 cut(s) 409
AjnI CCWGG 1 cut(s) 676
AjuI GAANNNNNNNTTGG 4 cut(s) 231, 263, 680, 712
AluBI AGCT 7 cut(s) 110, 137, 172, 190, 271, 391, 608
AluI AGCT 7 cut(s) 110, 137, 172, 190, 271, 391, 608
Alw26I GTCTC 2 cut(s) 482, 604
AlwI GGATC 1 cut(s) 98
AoxI GGCC 4 cut(s) 160, 461, 572, 784
ApeKI GCWGC 3 cut(s) 299, 608, 760
ApoI RAATTY 1 cut(s) 630
AspLEI GCGC 1 cut(s) 760
AsuHPI GGTGA 2 cut(s) 393, 804
BalI TGGCCA 1 cut(s) 786
BauI CACGAG 1 cut(s) 311
BbvI GCAGC 3 cut(s) 311, 595, 747
BccI CCATC 3 cut(s) 449, 453, 731
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 1 cut(s) 678
BcoDI GTCTC 2 cut(s) 482, 604
BcuI ACTAGT 1 cut(s) 409
BfaI CTAG 5 cut(s) 111, 257, 410, 533, 627
BfoI RGCGCY 1 cut(s) 761
BglII AGATCT 1 cut(s) 538
BisI GCNGC 4 cut(s) 300, 426, 609, 761
BlsI GCNGC 4 cut(s) 301, 427, 610, 762
BmcAI AGTACT 1 cut(s) 519
Bme1390I CCNGG 1 cut(s) 678
BmiI GGNNCC 1 cut(s) 807
BmrFI CCNGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 502
BpuEI CTTGAG 1 cut(s) 371
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 676
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 249, 570
Bse1I ACTGG 2 cut(s) 787, 787
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 678
BseDI CCNNGG 1 cut(s) 676
BseGI GGATG 1 cut(s) 464
BseLI CCNNNNNNNGG 3 cut(s) 18, 249, 570
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 3 cut(s) 159, 477, 512
BseNI ACTGG 2 cut(s) 787, 787
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 3 cut(s) 311, 595, 747
BshFI GGCC 4 cut(s) 162, 463, 574, 786
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 18, 249, 570
BsmAI GTCTC 2 cut(s) 482, 604
BsmI GAATGC 2 cut(s) 332, 622
BsnI GGCC 4 cut(s) 162, 463, 574, 786
Bso31I GGTCTC 1 cut(s) 482
Bsp143I GATC 2 cut(s) 90, 538
BspACI CCGC 1 cut(s) 425
BspANI GGCC 4 cut(s) 162, 463, 574, 786
BspCNI CTCAG 3 cut(s) 160, 478, 513
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 807
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 2 cut(s) 787, 787
BssECI CCNNGG 1 cut(s) 676
BssMI GATC 2 cut(s) 90, 538
BssSI CACGAG 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 3 cut(s) 100, 776, 810
BstC8I GCNNGC 2 cut(s) 572, 756
BstDEI CTNAG 4 cut(s) 168, 435, 486, 521
BstF5I GGATG 1 cut(s) 464
BstH2I RGCGCY 1 cut(s) 761
BstHHI GCGC 1 cut(s) 760
BstKTI GATC 2 cut(s) 93, 541
BstMAI GTCTC 2 cut(s) 482, 604
BstMBI GATC 2 cut(s) 90, 538
BstMWI GCNNNNNNNGC 5 cut(s) 224, 431, 617, 711, 760
BstNI CCWGG 1 cut(s) 678
BstSCI CCNGG 1 cut(s) 676
BstV1I GCAGC 3 cut(s) 311, 595, 747
BstX2I RGATCY 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 459
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 4 cut(s) 162, 463, 574, 786
BtsCI GGATG 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 572, 756
CciI TCATGA 1 cut(s) 93
CfoI GCGC 1 cut(s) 760
Csp6I GTAC 1 cut(s) 518
CviAII CATG 1 cut(s) 94
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 4 cut(s) 168, 435, 486, 521
DpnI GATC 2 cut(s) 92, 540
DpnII GATC 2 cut(s) 90, 538
EaeI YGGCCR 1 cut(s) 784
Eco31I GGTCTC 1 cut(s) 482
Eco32I GATATC 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 630
EcoRII CCWGG 1 cut(s) 676
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 622
FaeI CATG 1 cut(s) 97
FaiI YATR 5 cut(s) 24, 95, 348, 622, 797
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 300, 426, 609, 761
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 4 cut(s) 300, 426, 609, 761
FspBI CTAG 5 cut(s) 111, 257, 410, 533, 627
GlaI GCGC 1 cut(s) 759
GluI GCNGC 4 cut(s) 300, 426, 609, 761
HaeII RGCGCY 1 cut(s) 761
HaeIII GGCC 4 cut(s) 162, 463, 574, 786
HapII CCGG 1 cut(s) 159
HhaI GCGC 1 cut(s) 760
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 758
HinP1I GCGC 1 cut(s) 758
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 4 cut(s) 155, 360, 398, 523
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 393, 804
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 5 cut(s) 62, 169, 322, 397, 445
Hpy188III TCNNGA 4 cut(s) 94, 131, 265, 452
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 2 cut(s) 725, 796
HpyCH4III ACNGT 3 cut(s) 100, 776, 810
HpyCH4V TGCA 7 cut(s) 26, 227, 299, 515, 620, 638, 705
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 431, 617, 711, 760
HpyF3I CTNAG 4 cut(s) 168, 435, 486, 521
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 758
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 90, 538
LmnI GCTCC 1 cut(s) 768
Lsp1109I GCAGC 3 cut(s) 311, 595, 747
LweI GCATC 1 cut(s) 502
MaeI CTAG 5 cut(s) 111, 257, 410, 533, 627
MaeIII GTNAC 5 cut(s) 31, 196, 528, 680, 810
MalI GATC 2 cut(s) 92, 540
MboI GATC 2 cut(s) 90, 538
MboII GAAGA 4 cut(s) 287, 335, 548, 784
MfeI CAATTG 3 cut(s) 74, 283, 664
MflI RGATCY 1 cut(s) 538
MlsI TGGCCA 1 cut(s) 786
MluCI AATT 7 cut(s) 74, 146, 245, 283, 630, 664, 706
MluNI TGGCCA 1 cut(s) 786
MlyI GAGTC 2 cut(s) 164, 532
MnlI CCTC 7 cut(s) 12, 117, 173, 361, 392, 395, 585
Mox20I TGGCCA 1 cut(s) 786
Mph1103I ATGCAT 1 cut(s) 622
MscI TGGCCA 1 cut(s) 786
MseI TTAA 4 cut(s) 104, 476, 719, 820
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 786
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 678
MunI CAATTG 3 cut(s) 74, 283, 664
Mva1269I GAATGC 2 cut(s) 332, 622
MvaI CCWGG 1 cut(s) 678
MwoI GCNNNNNNNGC 5 cut(s) 224, 431, 617, 711, 760
NdeII GATC 2 cut(s) 90, 538
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 807
NmuCI GTSAC 4 cut(s) 31, 196, 528, 810
NsiI ATGCAT 1 cut(s) 622
PagI TCATGA 1 cut(s) 93
PctI GAATGC 2 cut(s) 332, 622
PfeI GAWTC 2 cut(s) 360, 398
PflMI CCANNNNNTGG 1 cut(s) 570
PkrI GCNGC 4 cut(s) 301, 427, 610, 762
PleI GAGTC 2 cut(s) 163, 531
PpsI GAGTC 2 cut(s) 163, 531
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 1 cut(s) 807
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 4 cut(s) 104, 476, 719, 820
SatI GCNGC 4 cut(s) 300, 426, 609, 761
Sau3AI GATC 2 cut(s) 90, 538
ScaI AGTACT 1 cut(s) 519
SchI GAGTC 2 cut(s) 164, 532
ScrFI CCNGG 1 cut(s) 678
SfaNI GCATC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SpeI ACTAGT 1 cut(s) 409
Sse9I AATT 7 cut(s) 74, 146, 245, 283, 630, 664, 706
SsiI CCGC 1 cut(s) 425
SspMI CTAG 5 cut(s) 111, 257, 410, 533, 627
StyD4I CCNGG 1 cut(s) 676
TaaI ACNGT 3 cut(s) 100, 776, 810
TaqI TCGA 3 cut(s) 237, 577, 726
TasI AATT 7 cut(s) 74, 146, 245, 283, 630, 664, 706
TatI WGTACW 1 cut(s) 517
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 2 cut(s) 360, 398
Tru1I TTAA 4 cut(s) 104, 476, 719, 820
Tru9I TTAA 4 cut(s) 104, 476, 719, 820
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 4 cut(s) 31, 196, 528, 810
TseI GCWGC 3 cut(s) 299, 608, 760
Tsp45I GTSAC 4 cut(s) 31, 196, 528, 810
TspDTI ATGAA 4 cut(s) 132, 173, 306, 784
TspGWI ACGGA 1 cut(s) 814
TspRI CASTG 1 cut(s) 105
Van91I CCANNNNNTGG 1 cut(s) 570
XapI RAATTY 1 cut(s) 630
XspI CTAG 5 cut(s) 111, 257, 410, 533, 627
ZrmI AGTACT 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.