FvH4_7g13603

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000170
Physical Location & Seq
Forward (+)
12183258 .. 12187778
4521 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13603.t3

Sequence Viewer

Length: 897 bp
ATGGCACAATCAACTACGAGGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGGTTCGAAACTGTAAGGCAGTTGGCCTCAAAGGGAATCAATGTGGTCTTAACTGCTAGAGATGAGAAGAGAGGTCTTGAAGCTGTTGAGAAACTTAAAGAGTCTGGCCTCTCAGCCCAAGTGGTTTTTCACCAACTCGATGTGGCTGACCCTGCTAGTATTGCTTCTCTGGCACAATTCGTCAAGACCCAGTTCGGGAAACTCGATATTTTGGTGAACAATGCAGGGATTGGTGGAGTGATAATTGATGCTCATGGTTTTAGAGCTGCATATGAATCTGGTGTTGAAGGAGGACAGATTAATTGGACAAAGTTCTTGACTGAAACTTATGCGTTAACAGAAGAATGCTTGCAAATCAATTATTACGGTGCTAAAAAAACAGCTGAAGCACTTATTCCACTTCTCCAGCTCTCTGATTCACCAAGAATTGTTAATGTTTCATCCTCTATGGGGAAGTTAAAGAAAATACCAAGTGATCGGGTGAAAGGAATTCTTAGTGCTGACATAGAGAACCTAAGCGAAGAGACTGTAGATCAAGTACTGACAGAGTTTCTAAACGACCTCAAAGAGGGTTCACTTGAACTCAAGGGTTGGCCTACTCTGATGTCAGGCTATACAGTCTCAAAAGCAGCAATGAATGCATACACAAGGATTCTAGCCAAGAAATACCCTGGATTTTGTGTCAACTCTGTCTGCCCTGGTTATGTCAAAACAGATATAAATTTCAATACCGGCTTCATGACTGTTGAAGAAGGCACTGCAAGTGTAGTGAAGTTAGCATTGCTGCCCAATGATGGCCCTACTGGCCAGTTCTTTTTCCGTTCTGAAGTATCCTGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

299

Amino Acids

32.23

Weight (kDa)

5.86

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 147 1.5e-24 short chain dehydrogenase
KR PF08659 10 - 86 8.2e-07 KR domain
adh_short_C2 PF13561 15 - 158 1.7e-18 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 2 cut(s) 543, 775
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 594
AfiI CCNNNNNNNGG 4 cut(s) 249, 504, 622, 848
AgsI TTSAA 5 cut(s) 134, 341, 635, 781, 803
AjnI CCWGG 2 cut(s) 724, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 4 cut(s) 137, 320, 437, 463
AluI AGCT 4 cut(s) 137, 320, 437, 463
Alw26I GTCTC 2 cut(s) 572, 679
AlwI GGATC 1 cut(s) 46
AoxI GGCC 5 cut(s) 78, 160, 647, 850, 859
ApeKI GCWGC 3 cut(s) 320, 683, 838
ApoI RAATTY 2 cut(s) 543, 775
AseI ATTAAT 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 851
AsuHPI GGTGA 4 cut(s) 176, 280, 465, 547
AsuII TTCGAA 1 cut(s) 60
BalI TGGCCA 1 cut(s) 861
BbvI GCAGC 3 cut(s) 307, 695, 825
BccI CCATC 1 cut(s) 842
BciT130I CCWGG 2 cut(s) 726, 753
BciVI GTATCC 1 cut(s) 895
BcoDI GTCTC 2 cut(s) 572, 679
BfaI CTAG 3 cut(s) 111, 210, 710
BfmI CTRYAG 1 cut(s) 582
BfuI GTATCC 1 cut(s) 895
BglI GCCNNNNNGGC 1 cut(s) 858
BisI GCNGC 3 cut(s) 321, 684, 839
BlsI GCNGC 3 cut(s) 322, 685, 840
BmcAI AGTACT 1 cut(s) 594
Bme1390I CCNGG 2 cut(s) 726, 753
BmgT120I GGNCC 1 cut(s) 851
BmrFI CCNGG 2 cut(s) 726, 753
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 724, 751
Bsc4I CCNNNNNNNGG 4 cut(s) 249, 504, 622, 848
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 3 cut(s) 244, 862, 862
Bse3DI GCAATG 2 cut(s) 693, 833
BseBI CCWGG 2 cut(s) 726, 753
BseDI CCNNGG 2 cut(s) 724, 751
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 4 cut(s) 249, 504, 622, 848
BseMI GCAATG 2 cut(s) 693, 833
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 3 cut(s) 244, 862, 862
BseXI GCAGC 3 cut(s) 307, 695, 825
BshFI GGCC 5 cut(s) 80, 162, 649, 852, 861
BsiSI CCGG 1 cut(s) 786
BslI CCNNNNNNNGG 4 cut(s) 249, 504, 622, 848
BsmAI GTCTC 2 cut(s) 572, 679
BsmI GAATGC 2 cut(s) 404, 697
BsnI GGCC 5 cut(s) 80, 162, 649, 852, 861
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 38, 529, 586
BspANI GGCC 5 cut(s) 80, 162, 649, 852, 861
BspCNI CTCAG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 792
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 60
BsrDI GCAATG 2 cut(s) 693, 833
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 3 cut(s) 244, 862, 862
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 2 cut(s) 724, 751
BssMI GATC 3 cut(s) 38, 529, 586
Bst2UI CCWGG 2 cut(s) 726, 753
Bst4CI ACNGT 5 cut(s) 67, 422, 583, 673, 799
Bst6I CTCTTC 2 cut(s) 116, 570
BstAPI GCANNNNNTGC 1 cut(s) 692
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 166, 548, 569
BstENI CCTNNNNNAGG 1 cut(s) 620
BstF5I GGATG 1 cut(s) 494
BstKTI GATC 3 cut(s) 41, 532, 589
BstMAI GTCTC 2 cut(s) 572, 679
BstMBI GATC 3 cut(s) 38, 529, 586
BstMWI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 692, 858
BstNI CCWGG 2 cut(s) 726, 753
BstSCI CCNGG 2 cut(s) 724, 751
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 3 cut(s) 307, 695, 825
BsuI GTATCC 1 cut(s) 895
BsuRI GGCC 5 cut(s) 80, 162, 649, 852, 861
BtsCI GGATG 1 cut(s) 494
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 1 cut(s) 810
Cac8I GCNNGC 1 cut(s) 404
CciI TCATGA 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 1 cut(s) 851
Csp6I GTAC 1 cut(s) 593
CviAII CATG 2 cut(s) 308, 793
CviQI GTAC 1 cut(s) 593
DdeI CTNAG 3 cut(s) 166, 548, 569
DpnI GATC 3 cut(s) 40, 531, 588
DpnII GATC 3 cut(s) 38, 529, 586
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 2 cut(s) 116, 570
EarI CTCTTC 2 cut(s) 116, 570
Eco57I CTGAAG 1 cut(s) 459
EcoNI CCTNNNNNAGG 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 724, 751
EcoT22I ATGCAT 1 cut(s) 697
FaeI CATG 2 cut(s) 311, 796
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FatI CATG 2 cut(s) 307, 792
FauNDI CATATG 1 cut(s) 325
Fnu4HI GCNGC 3 cut(s) 321, 684, 839
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 3 cut(s) 321, 684, 839
FspBI CTAG 3 cut(s) 111, 210, 710
GluI GCNGC 3 cut(s) 321, 684, 839
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 5 cut(s) 80, 162, 649, 852, 861
HapII CCGG 1 cut(s) 786
Hin1II CATG 2 cut(s) 311, 796
HincII GTYRAC 2 cut(s) 390, 739
HindII GTYRAC 2 cut(s) 390, 739
HinfI GANTC 6 cut(s) 51, 90, 155, 329, 470, 706
HpaI GTTAAC 1 cut(s) 390
HpaII CCGG 1 cut(s) 786
HphI GGTGA 4 cut(s) 176, 280, 465, 547
Hpy166II GTNNAC 4 cut(s) 271, 390, 629, 739
Hpy188I TCNGA 3 cut(s) 469, 657, 880
Hpy188III TCNNGA 5 cut(s) 131, 238, 250, 370, 793
Hpy8I GTNNAC 4 cut(s) 271, 390, 629, 739
HpyAV CCTTC 2 cut(s) 335, 800
HpyCH4III ACNGT 5 cut(s) 67, 422, 583, 673, 799
HpyCH4V TGCA 6 cut(s) 26, 278, 323, 406, 695, 815
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 692, 858
HpyF3I CTNAG 3 cut(s) 166, 548, 569
Hsp92II CATG 2 cut(s) 311, 796
KspAI GTTAAC 1 cut(s) 390
Kzo9I GATC 3 cut(s) 38, 529, 586
Lsp1109I GCAGC 3 cut(s) 307, 695, 825
LweI GCATC 1 cut(s) 292
MaeI CTAG 3 cut(s) 111, 210, 710
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 40, 531, 588
MboI GATC 3 cut(s) 38, 529, 586
MboII GAAGA 4 cut(s) 133, 407, 587, 815
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 7 cut(s) 230, 297, 355, 412, 480, 543, 775
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 8 cut(s) 12, 91, 119, 173, 338, 508, 616, 626
Mox20I TGGCCA 1 cut(s) 861
Mph1103I ATGCAT 1 cut(s) 697
MscI TGGCCA 1 cut(s) 861
MseI TTAA 6 cut(s) 104, 150, 354, 389, 486, 512
Msp20I TGGCCA 1 cut(s) 861
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 2 cut(s) 726, 753
Mva1269I GAATGC 2 cut(s) 404, 697
MvaI CCWGG 2 cut(s) 726, 753
MwoI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 692, 858
NdeI CATATG 1 cut(s) 325
NdeII GATC 3 cut(s) 38, 529, 586
NlaIII CATG 2 cut(s) 311, 796
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 697
NspV TTCGAA 1 cut(s) 60
PagI TCATGA 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 2 cut(s) 404, 697
PfeI GAWTC 5 cut(s) 51, 90, 329, 470, 706
PkrI GCNGC 3 cut(s) 322, 685, 840
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 724, 751
PspGI CCWGG 2 cut(s) 724, 751
PspPI GGNCC 1 cut(s) 851
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
SaqAI TTAA 6 cut(s) 104, 150, 354, 389, 486, 512
SatI GCNGC 3 cut(s) 321, 684, 839
Sau3AI GATC 3 cut(s) 38, 529, 586
Sau96I GGNCC 1 cut(s) 851
ScaI AGTACT 1 cut(s) 594
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 726, 753
SetI ASST 8 cut(s) 23, 130, 139, 322, 439, 465, 570, 618
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 582
SfiI GGCCNNNNNGGCC 1 cut(s) 858
SfuI TTCGAA 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 7 cut(s) 230, 297, 355, 412, 480, 543, 775
SspMI CTAG 3 cut(s) 111, 210, 710
StyD4I CCNGG 2 cut(s) 724, 751
TaaI ACNGT 5 cut(s) 67, 422, 583, 673, 799
TaqI TCGA 3 cut(s) 60, 192, 258
TasI AATT 7 cut(s) 230, 297, 355, 412, 480, 543, 775
TatI WGTACW 1 cut(s) 592
TfiI GAWTC 5 cut(s) 51, 90, 329, 470, 706
Tru1I TTAA 6 cut(s) 104, 150, 354, 389, 486, 512
Tru9I TTAA 6 cut(s) 104, 150, 354, 389, 486, 512
TscAI CASTG 1 cut(s) 817
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 320, 683, 838
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 342, 483, 704, 781
TspGWI ACGGA 1 cut(s) 863
TspRI CASTG 1 cut(s) 817
VspI ATTAAT 1 cut(s) 354
XagI CCTNNNNNAGG 1 cut(s) 620
XapI RAATTY 2 cut(s) 543, 775
XspI CTAG 3 cut(s) 111, 210, 710
ZrmI AGTACT 1 cut(s) 594
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.