Prupe.2G161500_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
21279406 .. 21281772
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G161500.1

Sequence Viewer

Length: 894 bp
ATGGCAGAAGCACCAAAGAGGTATGCAGTTGTTACTGGGGCAAACAAAGGCATAGGATTGGAAACTGTGAGGCAATTGGCCTCAAATGGATTCACTGTAGTCTTAACTGCCAGAGATGAGAAAAGGGGTCTTGAAGCTGCTGAGAAACTCAAAGAGTCTGGCCTCTCAGGTCAAGTGGTTTTTCATCAACTTGATGTGGCTAACCCTGCTACTGTTGCTTCCTTGGCAGAGTTCATCAAAACCCAGTTTGGGAAACTCGATATCTTGGTGAACAATGCAGGGATTGGTGGAGCCATAGGAGATGCTGATGGCTATATAGCTTTAGTAAAGTCTTTGGAAATGGGGAGAGGAGAAGTTGGTAGTAAACTATGGACTGAAACTTATGAGTTAACAGAAGAATGCTTGCAAATAAACTATTATGGTGCTAAAAGAACAGCTGAAGCACTTATCCCACTTCTCCAGTTATCTGACTCACCGAGAATTGTTAATGTTTCGTCTTTCCTGGGGAAGTTAATGCATATACCAAGCCATTGTGCTAAAGGAGTTTTTACAGATGCCGAAAACCTAACAGAAGAAAGAATAGATGATGTACTGAGTGAGCTTCTAAAAGACTTCAAGGAGGGTTCACTTGAAAGTAAGGGCTGGCCTTCTTCTTTGTCTGCCTATGTAGTCTCAAAAGCTGCACTGAACGCATATACAAGGATTCTAGCAAAGAAGTACCCCACTTTTCGTATCAATTCGTTATGCCCTGGCTCTGTCAAAACAGATATAACCTACAATGCCGGTTTCCTACCTGTCGAAGAAGGGGCTGCAAGGGTTATGAAGTTAGCATTGCTGCCCAATGATGGCCCTTCTGGCTCCTTCTTTGTTCAGTATGAAGTGTCAGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

298

Amino Acids

32.06

Weight (kDa)

5.43

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 591, 719
AfiI CCNNNNNNNGG 2 cut(s) 249, 845
AgsI TTSAA 3 cut(s) 134, 616, 632
AjnI CCWGG 2 cut(s) 501, 748
AluBI AGCT 5 cut(s) 137, 320, 437, 601, 680
AluI AGCT 5 cut(s) 137, 320, 437, 601, 680
Alw26I GTCTC 1 cut(s) 676
AoxI GGCC 4 cut(s) 78, 160, 644, 847
ApeKI GCWGC 4 cut(s) 137, 680, 809, 835
AspS9I GGNCC 1 cut(s) 848
AsuHPI GGTGA 2 cut(s) 280, 465
BbvI GCAGC 4 cut(s) 124, 667, 796, 822
BccI CCATC 2 cut(s) 302, 839
BciT130I CCWGG 2 cut(s) 503, 750
BcoDI GTCTC 1 cut(s) 676
BfaI CTAG 1 cut(s) 707
BfmI CTRYAG 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 855
BisI GCNGC 4 cut(s) 138, 681, 810, 836
BlsI GCNGC 4 cut(s) 139, 682, 811, 837
Bme1390I CCNGG 2 cut(s) 503, 750
BmgT120I GGNCC 1 cut(s) 848
BmiI GGNNCC 2 cut(s) 292, 859
BmrFI CCNGG 2 cut(s) 503, 750
BmrI ACTGGG 2 cut(s) 45, 238
BmsI GCATC 2 cut(s) 292, 544
BmuI ACTGGG 2 cut(s) 45, 238
BpmI CTGGAG 1 cut(s) 443
BsaJI CCNNGG 3 cut(s) 222, 502, 748
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 845
Bse118I RCCGGY 1 cut(s) 782
Bse1I ACTGG 3 cut(s) 40, 244, 460
Bse3DI GCAATG 1 cut(s) 830
BseBI CCWGG 2 cut(s) 503, 750
BseDI CCNNGG 3 cut(s) 222, 502, 748
BseLI CCNNNNNNNGG 2 cut(s) 249, 845
BseMI GCAATG 1 cut(s) 830
BseMII CTCAG 3 cut(s) 132, 180, 584
BseNI ACTGG 3 cut(s) 40, 244, 460
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 4 cut(s) 124, 667, 796, 822
BsgI GTGCAG 1 cut(s) 666
BshFI GGCC 4 cut(s) 80, 162, 646, 849
BsiSI CCGG 1 cut(s) 783
BslI CCNNNNNNNGG 2 cut(s) 249, 845
BsmAI GTCTC 1 cut(s) 676
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 4 cut(s) 80, 162, 646, 849
BspANI GGCC 4 cut(s) 80, 162, 646, 849
BspCNI CTCAG 3 cut(s) 133, 179, 585
BspLI GGNNCC 2 cut(s) 292, 859
BsrDI GCAATG 1 cut(s) 830
BsrFI RCCGGY 1 cut(s) 782
BsrI ACTGG 3 cut(s) 40, 244, 460
BssAI RCCGGY 1 cut(s) 782
BssECI CCNNGG 3 cut(s) 222, 502, 748
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 503, 750
Bst4CI ACNGT 3 cut(s) 67, 97, 214
BstC8I GCNNGC 2 cut(s) 404, 644
BstDEI CTNAG 3 cut(s) 141, 166, 593
BstMAI GTCTC 1 cut(s) 676
BstMWI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 689, 855
BstNI CCWGG 2 cut(s) 503, 750
BstSCI CCNGG 2 cut(s) 501, 748
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 124, 667, 796, 822
BsuRI GGCC 4 cut(s) 80, 162, 646, 849
BtsIMutI CAGTG 2 cut(s) 93, 683
Cac8I GCNNGC 2 cut(s) 404, 644
Cfr10I RCCGGY 1 cut(s) 782
Cfr13I GGNCC 1 cut(s) 848
Csp6I GTAC 2 cut(s) 590, 718
CviQI GTAC 2 cut(s) 590, 718
DdeI CTNAG 3 cut(s) 141, 166, 593
Eco130I CCWWGG 1 cut(s) 222
Eco32I GATATC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 459
EcoRII CCWGG 2 cut(s) 501, 748
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 138, 681, 810, 836
Fsp4HI GCNGC 4 cut(s) 138, 681, 810, 836
FspBI CTAG 1 cut(s) 707
GluI GCNGC 4 cut(s) 138, 681, 810, 836
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 4 cut(s) 80, 162, 646, 849
HapII CCGG 1 cut(s) 783
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 4 cut(s) 90, 155, 470, 703
HpaI GTTAAC 1 cut(s) 390
HpaII CCGG 1 cut(s) 783
HphI GGTGA 2 cut(s) 280, 465
Hpy166II GTNNAC 4 cut(s) 271, 365, 390, 626
Hpy188I TCNGA 2 cut(s) 469, 886
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 4 cut(s) 271, 365, 390, 626
HpyAV CCTTC 4 cut(s) 657, 797, 861, 871
HpyCH4III ACNGT 3 cut(s) 67, 97, 214
HpyCH4V TGCA 6 cut(s) 26, 278, 406, 517, 683, 812
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 689, 855
HpyF3I CTNAG 3 cut(s) 141, 166, 593
KspAI GTTAAC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 290, 863
Lsp1109I GCAGC 4 cut(s) 124, 667, 796, 822
LweI GCATC 2 cut(s) 292, 544
MaeI CTAG 1 cut(s) 707
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 4 cut(s) 407, 584, 642, 812
MfeI CAATTG 1 cut(s) 74
MluCI AATT 3 cut(s) 74, 480, 736
MlyI GAGTC 2 cut(s) 164, 464
MnlI CCTC 6 cut(s) 12, 63, 91, 173, 341, 613
Mph1103I ATGCAT 1 cut(s) 519
MseI TTAA 5 cut(s) 104, 389, 486, 512, 892
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 783
MspR9I CCNGG 2 cut(s) 503, 750
MunI CAATTG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 2 cut(s) 503, 750
MwoI GCNNNNNNNGC 5 cut(s) 206, 215, 224, 689, 855
NlaIV GGNNCC 2 cut(s) 292, 859
NsiI ATGCAT 1 cut(s) 519
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 90, 703
PkrI GCNGC 4 cut(s) 139, 682, 811, 837
PleI GAGTC 2 cut(s) 163, 464
PpsI GAGTC 2 cut(s) 163, 464
Psp6I CCWGG 2 cut(s) 501, 748
PspGI CCWGG 2 cut(s) 501, 748
PspN4I GGNNCC 2 cut(s) 292, 859
PspPI GGNCC 1 cut(s) 848
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 2 cut(s) 591, 719
RsaNI GTAC 2 cut(s) 590, 718
SaqAI TTAA 5 cut(s) 104, 389, 486, 512, 892
SatI GCNGC 4 cut(s) 138, 681, 810, 836
Sau96I GGNCC 1 cut(s) 848
SchI GAGTC 2 cut(s) 164, 464
ScrFI CCNGG 2 cut(s) 503, 750
SfaNI GCATC 2 cut(s) 292, 544
SfcI CTRYAG 1 cut(s) 96
Sse9I AATT 3 cut(s) 74, 480, 736
SspMI CTAG 1 cut(s) 707
StyD4I CCNGG 2 cut(s) 501, 748
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 3 cut(s) 67, 97, 214
TaqI TCGA 2 cut(s) 258, 798
TasI AATT 3 cut(s) 74, 480, 736
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 2 cut(s) 90, 703
Tru1I TTAA 5 cut(s) 104, 389, 486, 512, 892
Tru9I TTAA 5 cut(s) 104, 389, 486, 512, 892
TscAI CASTG 2 cut(s) 100, 690
TseI GCWGC 4 cut(s) 137, 680, 809, 835
TspDTI ATGAA 4 cut(s) 173, 223, 836, 891
TspRI CASTG 2 cut(s) 100, 690
XspI CTAG 1 cut(s) 707
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.