RchiOBHm_Chr7g0224751

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000170
Physical Location & Seq
Forward (+)
47032801 .. 47034921
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20124

Sequence Viewer

Length: 888 bp
ATGGCAGAAGCCAAAAAGAGGTATGCAGTTGTCACAGGGGCTAATAAAGGAGTTGGGTTCGGAGTAGTAAGACAATTGGCTTCAAATGGGATCATGACAGTGTTAACAGCTAGAGATGAAAAGAGGGGTCTTGAAGCTGTTGAAAAATTGAAAGAGTCCGGCCTCTCTGAGCTTGTGGTATTTCATCAGCTTGATGTGACAAACCCAGATAGCATTGCTTCCCTTGCACATTTTGTCAAAACCCAATTTGGGAAACTAGATATCTTGGTAAACAATGCAGGAGTGTTTGGATGCATACTAAACCCTGAAGCTTTTAGAGAAGTATCCAGTAAGAAGCTTGAAGAAGTCAATTGGAATGAACTTGCAGCACCAAACTACGAGTTATCAGAAGAATGCCTGAAAACAAACTATTATGGCACGAAAGGAATCACAGAGGCACTTTTGCCCCTCCTCAAGCTGTCCGATTCACCCAGACTAGTTATTGTTTCTGCGGCTGTTGCTAAGTTATCGGATTTTCCAGATGGATGGCCTAAAGATGTATTAAGTAATGCTGAGACCCTAACAGAACAGAGAATAGATGCAGTACTGAGTCAGTCACTAGAAGATCTCAAACAAGGTTTGGTGGAAACCAAGGGCTGGCCTCGATACTTTTCAGCCTATTCAGTCTCAAAGGCTGCCTTGAATGCATACACTAGAATTCTTGCAAAGAAATATCCAAGTTTCTACATCAATTGTGTCTGCCCTGGTTACACCAAAACAGATTTCAACTGCAATTCTGGCTTCTTAACCATTGACGAAGGTGCTGAAAGCATTGTCAGGCTGGCGCTGCTCCCCAATGACAGTCCTACTGGCCAGTTCTTCATACGGAAGGAACCGTCACCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

295

Amino Acids

32.41

Weight (kDa)

5.89

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 167 3.4e-22 short chain dehydrogenase
KR PF08659 10 - 115 4.9e-06 KR domain
adh_short_C2 PF13561 13 - 111 3.3e-15 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 210 - 256 1.9e-06 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 217 - 256 4.3e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 636
AciI CCGC 1 cut(s) 491
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 850
AcsI RAATTY 1 cut(s) 696
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 585
AfiI CCNNNNNNNGG 3 cut(s) 18, 249, 636
AgsI TTSAA 7 cut(s) 84, 134, 143, 151, 341, 682, 766
AhlI ACTAGT 1 cut(s) 475
AjnI CCWGG 1 cut(s) 742
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
AluBI AGCT 7 cut(s) 110, 137, 172, 190, 311, 337, 457
AluI AGCT 7 cut(s) 110, 137, 172, 190, 311, 337, 457
Alw26I GTCTC 2 cut(s) 548, 670
AlwI GGATC 1 cut(s) 98
AoxI GGCC 4 cut(s) 160, 527, 638, 850
ApeKI GCWGC 3 cut(s) 365, 674, 826
ApoI RAATTY 1 cut(s) 696
AspLEI GCGC 1 cut(s) 826
AsuHPI GGTGA 2 cut(s) 459, 870
BalI TGGCCA 1 cut(s) 852
BbvI GCAGC 3 cut(s) 377, 661, 813
BccI CCATC 2 cut(s) 515, 519
BciT130I CCWGG 1 cut(s) 744
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 548, 670
BcuI ACTAGT 1 cut(s) 475
BfaI CTAG 5 cut(s) 111, 257, 476, 599, 693
BfoI RGCGCY 1 cut(s) 827
BfuI GTATCC 1 cut(s) 334
BglII AGATCT 1 cut(s) 604
BisI GCNGC 4 cut(s) 366, 492, 675, 827
BlsI GCNGC 4 cut(s) 367, 493, 676, 828
BmcAI AGTACT 1 cut(s) 585
Bme1390I CCNGG 1 cut(s) 744
BmiI GGNNCC 1 cut(s) 873
BmrFI CCNGG 1 cut(s) 744
BmsI GCATC 2 cut(s) 281, 568
BpuEI CTTGAG 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 630, 742
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 249, 636
Bse1I ACTGG 3 cut(s) 327, 853, 853
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 2 cut(s) 630, 742
BseGI GGATG 2 cut(s) 296, 530
BseLI CCNNNNNNNGG 3 cut(s) 18, 249, 636
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 3 cut(s) 159, 543, 578
BseNI ACTGG 3 cut(s) 327, 853, 853
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 3 cut(s) 377, 661, 813
BshFI GGCC 4 cut(s) 162, 529, 640, 852
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 18, 249, 636
BsmAI GTCTC 2 cut(s) 548, 670
BsmI GAATGC 2 cut(s) 398, 688
BsnI GGCC 4 cut(s) 162, 529, 640, 852
Bso31I GGTCTC 1 cut(s) 548
Bsp143I GATC 2 cut(s) 90, 604
BspACI CCGC 1 cut(s) 491
BspANI GGCC 4 cut(s) 162, 529, 640, 852
BspCNI CTCAG 3 cut(s) 160, 544, 579
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 873
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 3 cut(s) 327, 853, 853
BssECI CCNNGG 2 cut(s) 630, 742
BssMI GATC 2 cut(s) 90, 604
BssT1I CCWWGG 1 cut(s) 630
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 3 cut(s) 100, 842, 876
BstC8I GCNNGC 2 cut(s) 638, 822
BstDEI CTNAG 4 cut(s) 168, 501, 552, 587
BstF5I GGATG 2 cut(s) 296, 530
BstH2I RGCGCY 1 cut(s) 827
BstHHI GCGC 1 cut(s) 826
BstKTI GATC 2 cut(s) 93, 607
BstMAI GTCTC 2 cut(s) 548, 670
BstMBI GATC 2 cut(s) 90, 604
BstMWI GCNNNNNNNGC 5 cut(s) 224, 497, 683, 777, 826
BstNI CCWGG 1 cut(s) 744
BstSCI CCNGG 1 cut(s) 742
BstV1I GCAGC 3 cut(s) 377, 661, 813
BstX2I RGATCY 1 cut(s) 604
BstXI CCANNNNNNTGG 1 cut(s) 525
BstYI RGATCY 1 cut(s) 604
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 4 cut(s) 162, 529, 640, 852
BtsCI GGATG 2 cut(s) 296, 530
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 638, 822
CciI TCATGA 1 cut(s) 93
CfoI GCGC 1 cut(s) 826
Csp6I GTAC 1 cut(s) 584
CviAII CATG 1 cut(s) 94
CviQI GTAC 1 cut(s) 584
DdeI CTNAG 4 cut(s) 168, 501, 552, 587
DpnI GATC 2 cut(s) 92, 606
DpnII GATC 2 cut(s) 90, 604
EaeI YGGCCR 1 cut(s) 850
Eco130I CCWWGG 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 548
Eco32I GATATC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 742
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 630
EcoT22I ATGCAT 2 cut(s) 296, 688
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 1 cut(s) 97
FaiI YATR 6 cut(s) 24, 95, 296, 414, 688, 863
FalI AAGNNNNNCTT 2 cut(s) 662, 694
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 366, 492, 675, 827
FokI GGATG 2 cut(s) 303, 537
Fsp4HI GCNGC 4 cut(s) 366, 492, 675, 827
FspBI CTAG 5 cut(s) 111, 257, 476, 599, 693
GlaI GCGC 1 cut(s) 825
GluI GCNGC 4 cut(s) 366, 492, 675, 827
HaeII RGCGCY 1 cut(s) 827
HaeIII GGCC 4 cut(s) 162, 529, 640, 852
HapII CCGG 1 cut(s) 159
HhaI GCGC 1 cut(s) 826
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 824
HinP1I GCGC 1 cut(s) 824
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 2 cut(s) 309, 335
HinfI GANTC 4 cut(s) 155, 426, 464, 589
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 459, 870
Hpy166II GTNNAC 2 cut(s) 105, 271
Hpy188I TCNGA 5 cut(s) 62, 169, 388, 463, 511
Hpy188III TCNNGA 3 cut(s) 94, 131, 518
Hpy8I GTNNAC 2 cut(s) 105, 271
HpyAV CCTTC 2 cut(s) 791, 862
HpyCH4III ACNGT 3 cut(s) 100, 842, 876
HpyCH4V TGCA 9 cut(s) 26, 227, 278, 294, 365, 581, 686, 704, 771
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 497, 683, 777, 826
HpyF3I CTNAG 4 cut(s) 168, 501, 552, 587
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 824
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 90, 604
LmnI GCTCC 1 cut(s) 834
Lsp1109I GCAGC 3 cut(s) 377, 661, 813
LweI GCATC 2 cut(s) 281, 568
MaeI CTAG 5 cut(s) 111, 257, 476, 599, 693
MaeIII GTNAC 5 cut(s) 31, 196, 594, 746, 876
MalI GATC 2 cut(s) 92, 606
MboI GATC 2 cut(s) 90, 604
MboII GAAGA 4 cut(s) 353, 401, 614, 850
MfeI CAATTG 3 cut(s) 74, 349, 730
MflI RGATCY 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 7 cut(s) 74, 146, 245, 349, 696, 730, 772
MluNI TGGCCA 1 cut(s) 852
MlyI GAGTC 2 cut(s) 164, 598
MnlI CCTC 7 cut(s) 12, 117, 173, 427, 458, 461, 651
Mox20I TGGCCA 1 cut(s) 852
Mph1103I ATGCAT 2 cut(s) 296, 688
MscI TGGCCA 1 cut(s) 852
MseI TTAA 4 cut(s) 104, 542, 785, 886
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 852
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 744
MunI CAATTG 3 cut(s) 74, 349, 730
Mva1269I GAATGC 2 cut(s) 398, 688
MvaI CCWGG 1 cut(s) 744
MwoI GCNNNNNNNGC 5 cut(s) 224, 497, 683, 777, 826
NdeII GATC 2 cut(s) 90, 604
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 873
NmuCI GTSAC 4 cut(s) 31, 196, 594, 876
NsiI ATGCAT 2 cut(s) 296, 688
PagI TCATGA 1 cut(s) 93
PctI GAATGC 2 cut(s) 398, 688
PfeI GAWTC 2 cut(s) 426, 464
PflMI CCANNNNNTGG 1 cut(s) 636
PkrI GCNGC 4 cut(s) 367, 493, 676, 828
PleI GAGTC 2 cut(s) 163, 597
PpsI GAGTC 2 cut(s) 163, 597
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 1 cut(s) 873
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 1 cut(s) 585
RsaNI GTAC 1 cut(s) 584
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 4 cut(s) 104, 542, 785, 886
SatI GCNGC 4 cut(s) 366, 492, 675, 827
Sau3AI GATC 2 cut(s) 90, 604
ScaI AGTACT 1 cut(s) 585
SchI GAGTC 2 cut(s) 164, 598
ScrFI CCNGG 1 cut(s) 744
SfaNI GCATC 2 cut(s) 281, 568
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SpeI ACTAGT 1 cut(s) 475
Sse9I AATT 7 cut(s) 74, 146, 245, 349, 696, 730, 772
SsiI CCGC 1 cut(s) 491
SspMI CTAG 5 cut(s) 111, 257, 476, 599, 693
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 3 cut(s) 100, 842, 876
TaqI TCGA 1 cut(s) 643
TasI AATT 7 cut(s) 74, 146, 245, 349, 696, 730, 772
TatI WGTACW 1 cut(s) 583
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 2 cut(s) 426, 464
Tru1I TTAA 4 cut(s) 104, 542, 785, 886
Tru9I TTAA 4 cut(s) 104, 542, 785, 886
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 4 cut(s) 31, 196, 594, 876
TseI GCWGC 3 cut(s) 365, 674, 826
Tsp45I GTSAC 4 cut(s) 31, 196, 594, 876
TspDTI ATGAA 4 cut(s) 132, 173, 372, 850
TspGWI ACGGA 1 cut(s) 880
TspRI CASTG 1 cut(s) 105
Van91I CCANNNNNTGG 1 cut(s) 636
XapI RAATTY 1 cut(s) 696
XspI CTAG 5 cut(s) 111, 257, 476, 599, 693
ZrmI AGTACT 1 cut(s) 585
Zsp2I ATGCAT 2 cut(s) 296, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.