pycom01g07850

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000170
Physical Location & Seq
Forward (+)
8835883 .. 8837247
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07850.2

Sequence Viewer

Length: 594 bp
ATGGTAACCCCTGAAGATTTCAAATCAGCTTCAAGTGGTAAGAGGCCTGAAGAAATCAATTGGAGTGAAATACCTACCATACCAAATGACGAGGTAGCGGAACAATGCCTGAAGACAAACTACTATGGTACCAAAATTGTGACTGAAGCGCTTTTGCCCCTCCTCCAGCTGTCTGATTCTCCAAGAATCGTTAATGTTTCTTCCGGTGTTGGTAAACTAATGAATTTTCCAAATGGATGGGCTAAAGAGGTACTAAGTGATGCCGAGAGACTTACAGAAGAGAAGATAGATTCTGTGTTGATTAGATTTTTGGAAGACTTCAAAAAAGGAGACACCAAAATCTGGTCTCCTATTTTTCCACCCTATACAGTCTCAAAAGCAGCCTTGAACGCATACACTAGGATTCTGGCCAAGAAGTATCCGAATTTCTGCATCAATTGTGTGAGCCCTGGATTTGTCAAAACAGATATAACCTTCAATGTTGGCAACTTAACCATCGACGAAGGTGCTGAAAGCCTCGTCAGGTTGGCGCTACTTCCCAACGGTGGTCCTACTGGTCTCTACTTTGGTCAGAAAGAAGTCGCTTCGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

198

Amino Acids

21.77

Weight (kDa)

5.18

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 342
AciI CCGC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 2 cut(s) 223, 424
AcuI CTGAAG 4 cut(s) 33, 69, 131, 165
AfaI GTAC 2 cut(s) 130, 252
AfeI AGCGCT 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 342, 545
AgsI TTSAA 5 cut(s) 22, 33, 322, 388, 478
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 2 cut(s) 29, 169
AluI AGCT 2 cut(s) 29, 169
Alw26I GTCTC 5 cut(s) 262, 324, 351, 376, 563
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 2 cut(s) 44, 408
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 2 cut(s) 223, 424
Asp718I GGTACC 1 cut(s) 128
AspLEI GCGC 2 cut(s) 151, 532
AspS9I GGNCC 1 cut(s) 548
AvaII GGWCC 1 cut(s) 548
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BalI TGGCCA 1 cut(s) 410
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 449
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbsI GAAGAC 2 cut(s) 119, 321
BbvI GCAGC 1 cut(s) 392
BccI CCATC 2 cut(s) 231, 503
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 1 cut(s) 450
BciVI GTATCC 1 cut(s) 429
BcoDI GTCTC 5 cut(s) 262, 324, 351, 376, 563
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 2 cut(s) 152, 533
BfuI GTATCC 1 cut(s) 429
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 2 cut(s) 250, 441
BpiI GAAGAC 2 cut(s) 119, 321
BpmI CTGGAG 1 cut(s) 149
BsaI GGTCTC 2 cut(s) 351, 563
BsaJI CCNNGG 1 cut(s) 448
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 2 cut(s) 342, 545
Bse1I ACTGG 1 cut(s) 559
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 342, 545
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 392
BshFI GGCC 2 cut(s) 46, 410
BshNI GGYRCC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 342, 545
BsmAI GTCTC 5 cut(s) 262, 324, 351, 376, 563
BsnI GGCC 2 cut(s) 46, 410
Bso31I GGTCTC 2 cut(s) 351, 563
Bsp1286I GDGCHC 1 cut(s) 449
BspACI CCGC 1 cut(s) 98
BspANI GGCC 2 cut(s) 46, 410
BspLI GGNNCC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 2 cut(s) 351, 563
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 370, 545
Bst6I CTCTTC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 254
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 242
BstH2I RGCGCY 2 cut(s) 152, 533
BstHHI GCGC 2 cut(s) 151, 532
BstMAI GTCTC 5 cut(s) 262, 324, 351, 376, 563
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 450
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 392
BstV2I GAAGAC 2 cut(s) 119, 321
BstXI CCANNNNNNTGG 1 cut(s) 237
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 2 cut(s) 46, 410
BtsCI GGATG 1 cut(s) 242
CfoI GCGC 2 cut(s) 151, 532
Cfr13I GGNCC 1 cut(s) 548
Csp6I GTAC 2 cut(s) 129, 251
CviJI RGCY 8 cut(s) 29, 46, 169, 242, 383, 410, 447, 516
CviKI_1 RGCY 8 cut(s) 29, 46, 169, 242, 383, 410, 447, 516
CviQI GTAC 2 cut(s) 129, 251
DdeI CTNAG 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 449
Eco31I GGTCTC 2 cut(s) 351, 563
Eco47I GGWCC 1 cut(s) 548
Eco47III AGCGCT 1 cut(s) 150
Eco57I CTGAAG 4 cut(s) 33, 69, 131, 165
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 449
FaiI YATR 5 cut(s) 80, 126, 366, 394, 470
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 399
GlaI GCGC 2 cut(s) 150, 531
GluI GCNGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 2 cut(s) 152, 533
HaeIII GGCC 2 cut(s) 46, 410
HapII CCGG 1 cut(s) 204
HhaI GCGC 2 cut(s) 151, 532
Hin6I GCGC 2 cut(s) 149, 530
HinP1I GCGC 2 cut(s) 149, 530
HinfI GANTC 4 cut(s) 176, 186, 290, 403
HpaII CCGG 1 cut(s) 204
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 4 cut(s) 175, 423, 573, 593
Hpy8I GTNNAC 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 2 cut(s) 484, 497
HpyCH4III ACNGT 2 cut(s) 370, 545
HpyCH4V TGCA 1 cut(s) 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 1 cut(s) 254
HspAI GCGC 2 cut(s) 149, 530
KpnI GGTACC 1 cut(s) 132
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 2 cut(s) 250, 441
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 4, 139
MboII GAAGA 7 cut(s) 26, 62, 124, 192, 290, 295, 326
MfeI CAATTG 2 cut(s) 58, 436
MhlI GDGCHC 1 cut(s) 449
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 5 cut(s) 58, 135, 223, 424, 436
MluNI TGGCCA 1 cut(s) 410
MnlI CCTC 6 cut(s) 36, 85, 170, 173, 241, 527
Mox20I TGGCCA 1 cut(s) 410
MscI TGGCCA 1 cut(s) 410
MseI TTAA 2 cut(s) 192, 491
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 450
MunI CAATTG 2 cut(s) 58, 436
MvaI CCWGG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 389
NlaIV GGNNCC 1 cut(s) 130
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 139
PceI AGGCCT 1 cut(s) 46
PfeI GAWTC 4 cut(s) 176, 186, 290, 403
PflMI CCANNNNNTGG 1 cut(s) 342
PkrI GCNGC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 448
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 548
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 2 cut(s) 130, 252
RsaNI GTAC 2 cut(s) 129, 251
SaqAI TTAA 2 cut(s) 192, 491
SatI GCNGC 1 cut(s) 381
Sau96I GGNCC 1 cut(s) 548
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 449
SetI ASST 8 cut(s) 31, 76, 96, 171, 252, 476, 508, 527
SfaNI GCATC 2 cut(s) 250, 441
SinI GGWCC 1 cut(s) 548
Sse9I AATT 5 cut(s) 58, 135, 223, 424, 436
SseBI AGGCCT 1 cut(s) 46
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 399
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 448
TaaI ACNGT 2 cut(s) 370, 545
TaqI TCGA 1 cut(s) 498
TasI AATT 5 cut(s) 58, 135, 223, 424, 436
TfiI GAWTC 4 cut(s) 176, 186, 290, 403
Tru1I TTAA 2 cut(s) 192, 491
Tru9I TTAA 2 cut(s) 192, 491
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 2 cut(s) 223, 424
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.