RchiOBHm_Chr1g0353411

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000170
Physical Location & Seq
Forward (+)
46658686 .. 46660202
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57905

Sequence Viewer

Length: 915 bp
ATGCCTATTACCGAAAAAAGAAAAAGAAAAGTATTATATAACTTGAAGAATATATCTGTTGGTATTATAAAGGGAGAGGAGGCTACTACTACACATCTGTATGCAGTTGTGACAGGATCAAACAAAGGAATCGGATTTGAAACTGTAAGGCAGTTGGCCTCGAATGGAATCACTGTGGTGTTAACTGCTAGAGATGAGAAAAGAGGCCTTGAAGCTGTTGAGAAGCTGCATGAGTCTGGCCTCTCGGGCCAAGTAGTATTTCACCAACTTGATGTGGCTGACCCTGCTAGTATTGCTTCTCTGGCACAATTCATCAAAACTCAGTTTGGGAAGCTCGATATTTTGGTGAACAATGCTGGGATTTTTGGAGCTATAGCTGATGCTGATGGTTTCAAAGCTGCAATTGCCTCTAGTGCTGAAGCAGGACAGATTGATTTCAAAAAGTTGTTGACTGAAACTTATGAGTTAACAGAAGAATGCTTGCAAATCAATTATTATGGTGCTCAAAGAACATCTGAAGCCCTTATTCTACTCCTTCAGCTATCTGATTCACCAAGAATCGTTAATGTTTCATCCTCTATGGGAAAGTTAGAGAACATACTAGGTGATCGGGTGAAAGGACTTCTTAGTACTGATGTCGAGAACCTAAGCGAAGGGAGTGTAGATGAAGTATTGACAGAGTTTCTAAATGACCTCAAGGAGAGTTTACTTGAAAGCAAAGGTTGGCCTTCTGTGATGTCAGGCTATATACTCTCAAAGGCAGCAATGAATGCATATACGAGGATTCTAGCCAAGAAGTACCCCAGTTTTCGTGTCAACTCTGTCTGCCCTGGCTATGTCAAAACAGATATAAACTTCAATACTGGTGTCTTGCCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

304

Amino Acids

32.84

Weight (kDa)

5.43

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 35 - 199 5.8e-27 short chain dehydrogenase
KR PF08659 36 - 122 3.1e-07 KR domain
adh_short_C2 PF13561 41 - 124 4.3e-17 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 238 - 285 3.8e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 904
AcuI CTGAAG 3 cut(s) 438, 521, 537
AfaI GTAC 2 cut(s) 631, 800
AgsI TTSAA 8 cut(s) 46, 140, 212, 394, 439, 713, 859, 881
AjnI CCWGG 1 cut(s) 829
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 7 cut(s) 215, 226, 334, 371, 377, 398, 541
AluI AGCT 7 cut(s) 215, 226, 334, 371, 377, 398, 541
Alw21I GWGCWC 1 cut(s) 505
AlwI GGATC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 5 cut(s) 156, 205, 238, 247, 725
ApeKI GCWGC 4 cut(s) 226, 398, 761, 890
ApoI RAATTY 1 cut(s) 904
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 5 cut(s) 254, 358, 543, 617, 625
AvaI CYCGRG 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 4 cut(s) 213, 385, 773, 877
BccI CCATC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 831
BfaI CTAG 5 cut(s) 189, 288, 411, 602, 788
BfmI CTRYAG 1 cut(s) 372
BglI GCCNNNNNGGC 1 cut(s) 246
BisI GCNGC 4 cut(s) 227, 399, 762, 891
BlsI GCNGC 4 cut(s) 228, 400, 763, 892
BmcAI AGTACT 1 cut(s) 631
Bme1390I CCNGG 1 cut(s) 831
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 831
BmrI ACTGGG 1 cut(s) 798
BmsI GCATC 1 cut(s) 370
BmuI ACTGGG 1 cut(s) 798
Bpu10I CCTNAGC 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 680
BsaJI CCNNGG 1 cut(s) 829
Bse1I ACTGG 2 cut(s) 804, 868
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 1 cut(s) 829
BseGI GGATG 1 cut(s) 572
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 2 cut(s) 804, 868
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 4 cut(s) 213, 385, 773, 877
BseYI CCCAGC 1 cut(s) 356
BshFI GGCC 5 cut(s) 158, 207, 240, 249, 727
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 244
BsmI GAATGC 2 cut(s) 482, 775
BsnI GGCC 5 cut(s) 158, 207, 240, 249, 727
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 2 cut(s) 116, 607
BspANI GGCC 5 cut(s) 158, 207, 240, 249, 727
BspCNI CTCAG 1 cut(s) 334
BspPI GGATC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 2 cut(s) 804, 868
BssECI CCNNGG 1 cut(s) 829
BssMI GATC 2 cut(s) 116, 607
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 2 cut(s) 145, 175
BstAPI GCANNNNNTGC 1 cut(s) 770
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 3 cut(s) 321, 626, 647
BstF5I GGATG 1 cut(s) 572
BstKTI GATC 2 cut(s) 119, 610
BstMBI GATC 2 cut(s) 116, 607
BstMWI GCNNNNNNNGC 7 cut(s) 246, 284, 293, 302, 404, 413, 770
BstNI CCWGG 1 cut(s) 831
BstSCI CCNGG 1 cut(s) 829
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 4 cut(s) 213, 385, 773, 877
BsuRI GGCC 5 cut(s) 158, 207, 240, 249, 727
BtsCI GGATG 1 cut(s) 572
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 630, 799
CviAII CATG 1 cut(s) 230
CviQI GTAC 2 cut(s) 630, 799
DdeI CTNAG 3 cut(s) 321, 626, 647
DpnI GATC 2 cut(s) 118, 609
DpnII GATC 2 cut(s) 116, 607
Eco147I AGGCCT 1 cut(s) 207
Eco57I CTGAAG 3 cut(s) 438, 521, 537
Eco88I CYCGRG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 829
EcoT22I ATGCAT 1 cut(s) 775
FaeI CATG 1 cut(s) 233
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FatI CATG 1 cut(s) 229
Fnu4HI GCNGC 4 cut(s) 227, 399, 762, 891
FokI GGATG 1 cut(s) 559
Fsp4HI GCNGC 4 cut(s) 227, 399, 762, 891
FspBI CTAG 5 cut(s) 189, 288, 411, 602, 788
GluI GCNGC 4 cut(s) 227, 399, 762, 891
GsaI CCCAGC 1 cut(s) 360
HaeIII GGCC 5 cut(s) 158, 207, 240, 249, 727
Hin1II CATG 1 cut(s) 233
HincII GTYRAC 4 cut(s) 183, 450, 468, 817
HindII GTYRAC 4 cut(s) 183, 450, 468, 817
HinfI GANTC 6 cut(s) 129, 168, 233, 548, 558, 784
HpaI GTTAAC 2 cut(s) 183, 468
HphI GGTGA 5 cut(s) 254, 358, 543, 617, 625
Hpy166II GTNNAC 6 cut(s) 183, 349, 450, 468, 707, 817
Hpy188I TCNGA 3 cut(s) 134, 517, 547
Hpy188III TCNNGA 2 cut(s) 640, 901
Hpy8I GTNNAC 6 cut(s) 183, 349, 450, 468, 707, 817
HpyAV CCTTC 4 cut(s) 545, 647, 738, 878
HpyCH4III ACNGT 2 cut(s) 145, 175
HpyCH4V TGCA 6 cut(s) 104, 229, 401, 484, 773, 893
HpyF10VI GCNNNNNNNGC 7 cut(s) 246, 284, 293, 302, 404, 413, 770
HpyF3I CTNAG 3 cut(s) 321, 626, 647
Hsp92II CATG 1 cut(s) 233
KspAI GTTAAC 2 cut(s) 183, 468
Kzo9I GATC 2 cut(s) 116, 607
LmnI GCTCC 1 cut(s) 368
Lsp1109I GCAGC 4 cut(s) 213, 385, 773, 877
LweI GCATC 1 cut(s) 370
MaeI CTAG 5 cut(s) 189, 288, 411, 602, 788
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 118, 609
MboI GATC 2 cut(s) 116, 607
MboII GAAGA 3 cut(s) 58, 485, 893
MfeI CAATTG 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 4 cut(s) 308, 402, 490, 904
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 9 cut(s) 70, 73, 169, 197, 251, 418, 586, 704, 774
Mph1103I ATGCAT 1 cut(s) 775
MseI TTAA 3 cut(s) 182, 467, 564
MslI CAYNNNNRTG 2 cut(s) 99, 176
MspR9I CCNGG 1 cut(s) 831
MunI CAATTG 1 cut(s) 402
Mva1269I GAATGC 2 cut(s) 482, 775
MvaI CCWGG 1 cut(s) 831
MwoI GCNNNNNNNGC 7 cut(s) 246, 284, 293, 302, 404, 413, 770
NdeII GATC 2 cut(s) 116, 607
NlaIII CATG 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 775
OliI CACNNNNGTG 1 cut(s) 176
PceI AGGCCT 1 cut(s) 207
PctI GAATGC 2 cut(s) 482, 775
PfeI GAWTC 5 cut(s) 129, 168, 548, 558, 784
PkrI GCNGC 4 cut(s) 228, 400, 763, 892
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PsiI TTATAA 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 829
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 1 cut(s) 829
PspPI GGNCC 1 cut(s) 247
RsaI GTAC 2 cut(s) 631, 800
RsaNI GTAC 2 cut(s) 630, 799
RseI CAYNNNNRTG 2 cut(s) 99, 176
SaqAI TTAA 3 cut(s) 182, 467, 564
SatI GCNGC 4 cut(s) 227, 399, 762, 891
Sau3AI GATC 2 cut(s) 116, 607
Sau96I GGNCC 1 cut(s) 247
ScaI AGTACT 1 cut(s) 631
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 831
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 372
SfiI GGCCNNNNNGGCC 1 cut(s) 246
SmiMI CAYNNNNRTG 2 cut(s) 99, 176
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 4 cut(s) 308, 402, 490, 904
SseBI AGGCCT 1 cut(s) 207
SspMI CTAG 5 cut(s) 189, 288, 411, 602, 788
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 829
TaaI ACNGT 2 cut(s) 145, 175
TaqI TCGA 3 cut(s) 161, 336, 639
TasI AATT 4 cut(s) 308, 402, 490, 904
TatI WGTACW 1 cut(s) 629
TfiI GAWTC 5 cut(s) 129, 168, 548, 558, 784
Tru1I TTAA 3 cut(s) 182, 467, 564
Tru9I TTAA 3 cut(s) 182, 467, 564
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 4 cut(s) 226, 398, 761, 890
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 4 cut(s) 301, 561, 681, 782
TspRI CASTG 1 cut(s) 178
XapI RAATTY 1 cut(s) 904
XspI CTAG 5 cut(s) 189, 288, 411, 602, 788
ZrmI AGTACT 1 cut(s) 631
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.