RchiOBHm_Chr1g0353581

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000170
Physical Location & Seq
Forward (+)
46773041 .. 46774677
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57921

Sequence Viewer

Length: 804 bp
ATGACAGTATTAACTGCTAGAGATGAGAAGAAGGGTATTGAAGCTGTTGAGAAACTGAAAGAGTGTTGCCTCTCTAACGTTGTTGTTTTTCATCAGCTTGATGTCACAGACCCTGATAGCATCGCTTCCCTCGCAGATTTTGTCAAAACCCATTTTGGAAAACTGGATATCTTGGTGAACAATGCAGCAGTCAATGGACTCACTAACGAACCTGAAGCTTTCATAGCTGCAGCTGCAAATAGGGGAAAGGAAGGTATGGACGTCCACTGGAGTGATTTTGCAACTCAGACATACGAGTTAGGCAAAGAATGTCTAAAAACAAACTACTACGGCACCAAGAGAATTACCGAAGCACTTGTTCCTCTCCTTGAGCTATCGGATTCACCAAGAGTAGTCAATATTAGTTCTGGCGCAGGGAGGTTAAAGCTTATACCGAACGAGTGGGCCAAAGGGGTGTTAGGTGATGCTGAGAAACTTACAGAGGAGAGGGTAGATGAGGTTCTGAATGAGTTTCTAAAAGACTTCAAAGAAGATATGCTAGAAACCAAAGGCTGGCCACTTTCACTTTCTGCTTATATACTCTCCAAAGCTTCCTTGAATGCATACACTAGAATTCTGGCCAAGAAGTACAAAAATTTCTGTGTCAATTGCGTCTGCCCTGGATTCGTCAAAACAGATATGACCTTCAATGCAGGCATCTTAACCACTGATGAAGCTGCTGAAAATGTTACCAGGCTAGCTGTGTTTCCAAATGGCAATCCCTCCGGTATCTTCTTCTTTCAACAAGAAGCATCATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

267

Amino Acids

29.46

Weight (kDa)

5.09

Isoelectric Point (pI)

19.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 3 - 142 1.1e-14 short chain dehydrogenase
adh_short_C2 PF13561 3 - 138 5.7e-10 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 188 - 247 1.1e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 552
AclI AACGTT 1 cut(s) 78
AcoI YGGCCR 2 cut(s) 554, 618
AcsI RAATTY 2 cut(s) 612, 634
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 1 cut(s) 552
AgsI TTSAA 5 cut(s) 41, 526, 598, 688, 782
AjnI CCWGG 2 cut(s) 658, 731
AleI CACNNNNGTG 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 3 cut(s) 444, 554, 618
ApeKI GCWGC 5 cut(s) 185, 227, 230, 233, 716
ApoI RAATTY 2 cut(s) 612, 634
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 444
AsuHPI GGTGA 3 cut(s) 187, 375, 473
AsuNHI GCTAGC 1 cut(s) 736
BalI TGGCCA 2 cut(s) 556, 620
BanI GGYRCC 1 cut(s) 332
BbvI GCAGC 5 cut(s) 197, 214, 220, 242, 703
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 2 cut(s) 660, 733
BfaI CTAG 4 cut(s) 18, 539, 609, 737
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 5 cut(s) 186, 228, 231, 234, 717
BlsI GCNGC 5 cut(s) 187, 229, 232, 235, 718
Bme1390I CCNGG 2 cut(s) 660, 733
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 660, 733
BmsI GCATC 4 cut(s) 129, 454, 705, 800
BmtI GCTAGC 1 cut(s) 740
BpmI CTGGAG 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 389
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 658
BsaWI WCCGGW 1 cut(s) 764
Bsc4I CCNNNNNNNGG 1 cut(s) 552
Bse1I ACTGG 2 cut(s) 168, 272
BseBI CCWGG 2 cut(s) 660, 733
BseDI CCNNGG 1 cut(s) 658
BseGI GGATG 1 cut(s) 794
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 299, 459
BseNI ACTGG 2 cut(s) 168, 272
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 5 cut(s) 197, 214, 220, 242, 703
BshFI GGCC 3 cut(s) 446, 556, 620
BshNI GGYRCC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 765
BslI CCNNNNNNNGG 1 cut(s) 552
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 3 cut(s) 446, 556, 620
BspANI GGCC 3 cut(s) 446, 556, 620
BspCNI CTCAG 2 cut(s) 298, 460
BspLI GGNNCC 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 740
BspT107I GGYRCC 1 cut(s) 332
BsrI ACTGG 2 cut(s) 168, 272
BssECI CCNNGG 1 cut(s) 658
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 660, 733
Bst4CI ACNGT 1 cut(s) 7
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 554, 694, 738
BstDEI CTNAG 2 cut(s) 285, 468
BstF5I GGATG 1 cut(s) 794
BstHHI GCGC 1 cut(s) 413
BstMWI GCNNNNNNNGC 3 cut(s) 131, 224, 233
BstNI CCWGG 2 cut(s) 660, 733
BstSCI CCNGG 2 cut(s) 658, 731
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 5 cut(s) 197, 214, 220, 242, 703
BsuRI GGCC 3 cut(s) 446, 556, 620
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 794
BtsIMutI CAGTG 2 cut(s) 265, 705
Cac8I GCNNGC 3 cut(s) 554, 694, 738
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 444
CseI GACGC 1 cut(s) 640
Csp6I GTAC 1 cut(s) 628
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 2 cut(s) 285, 468
EaeI YGGCCR 2 cut(s) 554, 618
Eco32I GATATC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 2 cut(s) 658, 731
EcoRV GATATC 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 604
FaiI YATR 9 cut(s) 224, 257, 292, 431, 536, 576, 578, 604, 680
Fnu4HI GCNGC 5 cut(s) 186, 228, 231, 234, 717
FokI GGATG 1 cut(s) 781
Fsp4HI GCNGC 5 cut(s) 186, 228, 231, 234, 717
FspBI CTAG 4 cut(s) 18, 539, 609, 737
GlaI GCGC 1 cut(s) 412
GluI GCNGC 5 cut(s) 186, 228, 231, 234, 717
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 3 cut(s) 446, 556, 620
HapII CCGG 1 cut(s) 765
HgaI GACGC 1 cut(s) 640
HhaI GCGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 261
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HindIII AAGCTT 3 cut(s) 216, 425, 588
HinfI GANTC 3 cut(s) 198, 380, 663
HpaII CCGG 1 cut(s) 765
HphI GGTGA 3 cut(s) 187, 375, 473
Hpy166II GTNNAC 2 cut(s) 178, 265
Hpy188I TCNGA 3 cut(s) 288, 379, 504
Hpy8I GTNNAC 2 cut(s) 178, 265
HpyAV CCTTC 3 cut(s) 25, 245, 694
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 2 cut(s) 78, 261
HpyCH4V TGCA 6 cut(s) 185, 230, 236, 281, 602, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 224, 233
HpyF3I CTNAG 2 cut(s) 285, 468
HpySE526I ACGT 2 cut(s) 78, 261
Hsp92I GRCGYC 1 cut(s) 261
HspAI GCGC 1 cut(s) 411
Lsp1109I GCAGC 5 cut(s) 197, 214, 220, 242, 703
LweI GCATC 4 cut(s) 129, 454, 705, 800
MaeI CTAG 4 cut(s) 18, 539, 609, 737
MaeII ACGT 2 cut(s) 78, 261
MaeIII GTNAC 2 cut(s) 103, 727
MboII GAAGA 4 cut(s) 40, 542, 763, 766
MfeI CAATTG 1 cut(s) 646
MlsI TGGCCA 2 cut(s) 556, 620
MluCI AATT 4 cut(s) 342, 612, 634, 646
MluNI TGGCCA 2 cut(s) 556, 620
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 8 cut(s) 80, 140, 372, 411, 475, 480, 490, 772
Mox20I TGGCCA 2 cut(s) 556, 620
Mph1103I ATGCAT 1 cut(s) 604
MscI TGGCCA 2 cut(s) 556, 620
MseI TTAA 3 cut(s) 11, 422, 701
MslI CAYNNNNRTG 1 cut(s) 270
Msp20I TGGCCA 2 cut(s) 556, 620
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 765
MspR9I CCNGG 2 cut(s) 660, 733
MunI CAATTG 1 cut(s) 646
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 660, 733
MwoI GCNNNNNNNGC 3 cut(s) 131, 224, 233
NheI GCTAGC 1 cut(s) 736
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 604
OliI CACNNNNGTG 1 cut(s) 270
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 380, 663
PflMI CCANNNNNTGG 1 cut(s) 552
PkrI GCNGC 5 cut(s) 187, 229, 232, 235, 718
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 658, 731
PspGI CCWGG 2 cut(s) 658, 731
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 444
PsrI GAACNNNNNNTAC 2 cut(s) 483, 515
PstI CTGCAG 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 3 cut(s) 11, 422, 701
SatI GCNGC 5 cut(s) 186, 228, 231, 234, 717
Sau96I GGNCC 1 cut(s) 444
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 2 cut(s) 660, 733
SfaNI GCATC 4 cut(s) 129, 454, 705, 800
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 4 cut(s) 342, 612, 634, 646
SspI AATATT 1 cut(s) 400
SspMI CTAG 4 cut(s) 18, 539, 609, 737
StyD4I CCNGG 2 cut(s) 658, 731
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 2 cut(s) 81, 264
TasI AATT 4 cut(s) 342, 612, 634, 646
TatI WGTACW 1 cut(s) 627
TfiI GAWTC 2 cut(s) 380, 663
Tru1I TTAA 3 cut(s) 11, 422, 701
Tru9I TTAA 3 cut(s) 11, 422, 701
TscAI CASTG 2 cut(s) 272, 712
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 5 cut(s) 185, 227, 230, 233, 716
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 80, 211, 726
TspRI CASTG 2 cut(s) 272, 712
Van91I CCANNNNNTGG 1 cut(s) 552
XapI RAATTY 2 cut(s) 612, 634
XspI CTAG 4 cut(s) 18, 539, 609, 737
ZraI GACGTC 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.