Rw1G021610

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000170
Physical Location & Seq
Forward (+)
45947376 .. 45950955
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021610.1

Sequence Viewer

Length: 636 bp
ATGCAAAGTACACATATGAGAGTTCAACAGAGAAGAGGCCATAAAAAATTAAGGTCTTTTTATTACTGGTTAATGCAGGAAGCAGGACAGATTGATTTCAAAAAGTTGTTGACTGAAACTTATGAGTTAACAGAAGAATGCTTGCAAATCAATTATTATGGTGCTAAAAGAACAACTGAAGCCCTGATTCCACTCCTTCAGCTATCTGATTCACCAAGAATCGTTAATGTTTCATCCTCTATGGGGAAATTAGAGAACATACCAAGTGATCGGGTGAAAGGACTTCTTAGTACTGATGTGGAGAACCTAAGCGAAGAGAGTGTAGATGAAGTATTGACAGAGTTTCTAAACGACCTCAAGGAGAGTTTACTTGAAAGCAAGGGTTGGCCTTCTGCGATGTCAGGCTATATACTCTCAAAAGCAGCAATGAATGCATATACGAGGATTCTAGCCAAGAAGTACCCCTGTTTTCGGGTCAACTCTGTTTGCCCTGGCTATGTCAAAACAGATATAAACTTCAATACTGGTGTCTTGCCTGTTGAAGAAGGTGCTGCAAGTGTCGTGAATTTAGCATTGCTGCCTAATGATGGCCTCACAGGCCAATTCTTTGTTCGGTCTGAAGTACAAAGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

211

Amino Acids

23.76

Weight (kDa)

5.8

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 125 - 172 4.1e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01800 AT1G01800 AT2G24190 AT2G24190 AT3G61220 AT3G61220 AT3G61220
fragaria_vesca FvH4_7g13591 FvH4_7g13601 FvH4_7g13602 FvH4_7g13603 FvH4_7g13603 FvH4_7g13603 FvH4_7g13620
malus_domestica MD01G1052500.v1.1 MD01G1052600.v1.1 MD01G1052700.v1.1 MD01G1052800.v1.1 MD01G1053000.v1.1 MD01G1053100.v1.1 MD01G1053200.v1.1 MD01G1053300.v1.1 MD04G1099300.v1.1 MD04G1099400.v1.1 MD04G1099500.v1.1 MD07G1064800.v1.1 MD07G1142200.v1.1 MD07G1142300.v1.1
prunus_persica Prupe.1G171500_v2.0.a1 Prupe.1G171600_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160100_v2.0.a1 Prupe.2G160400_v2.0.a1 Prupe.2G160500_v2.0.a1 Prupe.2G160600_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160700_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160800_v2.0.a1 Prupe.2G160900_v2.0.a1 Prupe.2G161000_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161100_v2.0.a1 Prupe.2G161200_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161300_v2.0.a1 Prupe.2G161400_v2.0.a1 Prupe.2G161500_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161600_v2.0.a1 Prupe.2G161800_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G161900_v2.0.a1 Prupe.2G162200_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.2G162300_v2.0.a1 Prupe.4G240700_v2.0.a1 Prupe.4G240800_v2.0.a1
pyrus_communis pycom01g07820 pycom01g07840 pycom01g07850 pycom01g07860 pycom01g07880 pycom01g07900 pycom04g09450 pycom04g09460 pycom07g01290 pycom07g12490 pycom07g12510 pycom07g12570 pycom07g14080
rosa_chinensis RchiOBHm_Chr1g0353391 RchiOBHm_Chr1g0353401 RchiOBHm_Chr1g0353411 RchiOBHm_Chr1g0353421 RchiOBHm_Chr1g0353431 RchiOBHm_Chr1g0353481 RchiOBHm_Chr1g0353511 RchiOBHm_Chr1g0353531 RchiOBHm_Chr1g0353541 RchiOBHm_Chr1g0353571 RchiOBHm_Chr1g0353581 RchiOBHm_Chr1g0353621 RchiOBHm_Chr1g0353661 RchiOBHm_Chr7g0224711 RchiOBHm_Chr7g0224731 RchiOBHm_Chr7g0224751
rosa_laevigata RLG00000001859 RLG00000001863 RLG00000028244 RLG00000028267 RLG00000028269 RLG00000028270 RLG00000028272
rosa_multiflora Rmu_co8260681.1_g000001 Rmu_co8305447.1_g000001 Rmu_co8330951.1_g000001 Rmu_co8341853.1_g000001 Rmu_sc0000144.1_g000019 Rmu_sc0000144.1_g000020 Rmu_sc0000144.1_g000026 Rmu_sc0000687.1_g000012 Rmu_sc0000687.1_g000018 Rmu_sc0000687.1_g000019 Rmu_sc0000687.1_g000020 Rmu_sc0000687.1_g000026 Rmu_sc0001207.1_g000001 Rmu_sc0001207.1_g000012 Rmu_sc0005914.1_g000002 Rmu_sc0005914.1_g000005 Rmu_sc0005914.1_g000007 Rmu_sc0005947.1_g000025 Rmu_sc0007658.1_g000005 Rmu_sc0011028.1_g000012 Rmu_sc0011028.1_g000013 Rmu_sc0026118.1_g000001 Rmu_sc0026975.1_g000001 Rmu_sc0027167.1_g000001 Rmu_sc0042792.1_g000001
rosa_roxburghii Rroxscaffold_3G00234470 Rroxscaffold_4G00301760 Rroxscaffold_4G00301810 Rroxscaffold_4G00301820 Rroxscaffold_4G00301830 Rroxscaffold_4G00301840 Rroxscaffold_4G00301860 Rroxscaffold_4G00301870
rosa_rugosa Rorug01G0235700 Rorug01G0236300 Rorug01G0236600 Rorug01G0236800 Rorug07G0225000.1 Rorug07G0225100
rosa_samantha Rh1AG247900 Rh1AG248000 Rh1AG248400 Rh1AG248500 Rh1AG248600 Rh1AG248800 Rh1AG249000 Rh1AG249100 Rh1BG217700 Rh1BG218000 Rh1BG218400 Rh1BG218600 Rh1BG218800 Rh1BG218900 Rh1BG219200 Rh1DG244000 Rh1DG244300 Rh1DG244800 Rh1DG245000 Rh1DG245200 Rh1DG245300 Rh1DG245600 Rh1DG246200 Rh7BG361100 Rh7CG396500 Rh7CG396700 Rh7DG371200
rosa_wichuraiana Rw1G021600 Rw1G021610 Rw1G021620 Rw1G021640 Rw1G021650 Rw1G021660 Rw1G021680 Rw1G021710 Rw1G021900 Rw7G031330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 565
AcuI CTGAAG 2 cut(s) 182, 198
AfaI GTAC 4 cut(s) 10, 292, 461, 624
AfiI CCNNNNNNNGG 3 cut(s) 243, 471, 587
AgsI TTSAA 5 cut(s) 26, 100, 374, 520, 542
AjnI CCWGG 1 cut(s) 490
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
AoxI GGCC 4 cut(s) 37, 386, 589, 598
ApeKI GCWGC 3 cut(s) 422, 551, 577
ApoI RAATTY 1 cut(s) 565
AsuHPI GGTGA 2 cut(s) 204, 286
BbvI GCAGC 3 cut(s) 434, 538, 564
BccI CCATC 1 cut(s) 581
BciT130I CCWGG 1 cut(s) 492
BfaI CTAG 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 597
BisI GCNGC 3 cut(s) 423, 552, 578
BlsI GCNGC 3 cut(s) 424, 553, 579
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 490
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 471, 587
Bse1I ACTGG 2 cut(s) 71, 529
Bse3DI GCAATG 2 cut(s) 432, 572
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 3 cut(s) 243, 471, 587
BseMI GCAATG 2 cut(s) 432, 572
BseNI ACTGG 2 cut(s) 71, 529
BseXI GCAGC 3 cut(s) 434, 538, 564
BshFI GGCC 4 cut(s) 39, 388, 591, 600
BslI CCNNNNNNNGG 3 cut(s) 243, 471, 587
BsmI GAATGC 2 cut(s) 143, 436
BsnI GGCC 4 cut(s) 39, 388, 591, 600
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 4 cut(s) 39, 388, 591, 600
BsrDI GCAATG 2 cut(s) 432, 572
BsrI ACTGG 2 cut(s) 71, 529
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 492
Bst6I CTCTTC 2 cut(s) 28, 309
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 287, 308
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 431, 597
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstV1I GCAGC 3 cut(s) 434, 538, 564
BsuRI GGCC 4 cut(s) 39, 388, 591, 600
BtgZI GCGATG 1 cut(s) 410
BtsCI GGATG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 143
Csp6I GTAC 4 cut(s) 9, 291, 460, 623
CviJI RGCY 9 cut(s) 39, 182, 202, 388, 405, 452, 495, 591, 600
CviKI_1 RGCY 9 cut(s) 39, 182, 202, 388, 405, 452, 495, 591, 600
CviQI GTAC 4 cut(s) 9, 291, 460, 623
DdeI CTNAG 2 cut(s) 287, 308
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 28, 309
EarI CTCTTC 2 cut(s) 28, 309
Eco57I CTGAAG 2 cut(s) 182, 198
EcoRII CCWGG 1 cut(s) 490
EcoT22I ATGCAT 1 cut(s) 436
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FauNDI CATATG 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 423, 552, 578
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 423, 552, 578
FspBI CTAG 1 cut(s) 449
GluI GCNGC 3 cut(s) 423, 552, 578
HaeIII GGCC 4 cut(s) 39, 388, 591, 600
HincII GTYRAC 3 cut(s) 111, 129, 478
HindII GTYRAC 3 cut(s) 111, 129, 478
HinfI GANTC 4 cut(s) 187, 209, 219, 445
HpaI GTTAAC 1 cut(s) 129
HphI GGTGA 2 cut(s) 204, 286
Hpy166II GTNNAC 5 cut(s) 11, 111, 129, 368, 478
Hpy188I TCNGA 2 cut(s) 208, 619
Hpy188III TCNNGA 1 cut(s) 562
Hpy8I GTNNAC 5 cut(s) 11, 111, 129, 368, 478
HpyAV CCTTC 3 cut(s) 206, 399, 539
HpyCH4V TGCA 5 cut(s) 4, 76, 145, 434, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 597
HpyF3I CTNAG 2 cut(s) 287, 308
KspAI GTTAAC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 268
Lsp1109I GCAGC 3 cut(s) 434, 538, 564
MaeI CTAG 1 cut(s) 449
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 4 cut(s) 45, 146, 326, 554
MluCI AATT 5 cut(s) 47, 151, 248, 565, 602
MnlI CCTC 5 cut(s) 29, 247, 365, 435, 602
Mph1103I ATGCAT 1 cut(s) 436
MseI TTAA 5 cut(s) 50, 71, 128, 225, 634
MspR9I CCNGG 1 cut(s) 492
Mva1269I GAATGC 2 cut(s) 143, 436
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 431, 597
NdeI CATATG 1 cut(s) 15
NdeII GATC 1 cut(s) 268
NsiI ATGCAT 1 cut(s) 436
PctI GAATGC 2 cut(s) 143, 436
PfeI GAWTC 4 cut(s) 187, 209, 219, 445
PkrI GCNGC 3 cut(s) 424, 553, 579
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
RsaI GTAC 4 cut(s) 10, 292, 461, 624
RsaNI GTAC 4 cut(s) 9, 291, 460, 623
SaqAI TTAA 5 cut(s) 50, 71, 128, 225, 634
SatI GCNGC 3 cut(s) 423, 552, 578
Sau3AI GATC 1 cut(s) 268
ScaI AGTACT 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 492
SetI ASST 5 cut(s) 56, 204, 309, 357, 550
SfiI GGCCNNNNNGGCC 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 5 cut(s) 47, 151, 248, 565, 602
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 490
TaqII GACCGA 1 cut(s) 603
TasI AATT 5 cut(s) 47, 151, 248, 565, 602
TatI WGTACW 3 cut(s) 8, 290, 622
TfiI GAWTC 4 cut(s) 187, 209, 219, 445
Tru1I TTAA 5 cut(s) 50, 71, 128, 225, 634
Tru9I TTAA 5 cut(s) 50, 71, 128, 225, 634
TseI GCWGC 3 cut(s) 422, 551, 577
TspDTI ATGAA 3 cut(s) 222, 342, 443
XapI RAATTY 1 cut(s) 565
XspI CTAG 1 cut(s) 449
ZrmI AGTACT 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.